Wall clock time and date at job start Sat Apr 11 2020 07:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99951 * 2 1 4 4 H 1.48504 * 109.46827 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47643 * 300.00612 * 3 2 1 6 6 H 1.48497 * 109.46883 * 60.00751 * 3 2 1 7 7 C 1.38804 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00222 * 154.53744 * 7 2 1 9 9 N 1.36935 * 120.00169 * 334.54573 * 7 2 1 10 10 C 1.44344 * 116.42391 * 334.24230 * 9 7 2 11 11 C 1.51879 * 113.48154 * 187.52692 * 10 9 7 12 12 C 1.52910 * 111.49722 * 321.33066 * 11 10 9 13 13 H 1.08997 * 112.47428 * 293.13456 * 12 11 10 14 14 C 1.55406 * 106.56767 * 169.08665 * 12 11 10 15 15 N 1.47379 * 106.74089 * 270.28801 * 14 12 11 16 16 C 1.34776 * 125.74374 * 179.06321 * 15 14 12 17 17 O 1.21281 * 119.99698 * 5.14695 * 16 15 14 18 18 C 1.50706 * 120.00333 * 185.14434 * 16 15 14 19 19 H 1.09006 * 109.43738 * 25.76556 * 18 16 15 20 20 C 1.53120 * 109.49485 * 145.71271 * 18 16 15 21 21 C 1.53419 * 109.61469 * 190.05417 * 20 18 16 22 22 C 1.50601 * 108.33490 * 310.20029 * 21 20 18 23 23 N 1.32905 * 129.16262 * 196.61202 * 22 21 20 24 24 N 1.29022 * 108.63740 * 179.77092 * 23 22 21 25 25 N 1.29102 * 110.25533 * 0.02562 * 24 23 22 26 26 H 0.97008 * 126.00584 * 180.02562 * 25 24 23 27 27 C 1.34398 * 107.99144 * 0.06723 * 25 24 23 28 28 C 1.50531 * 129.25848 * 179.84948 * 27 25 24 29 29 C 1.47932 * 108.51628 * 359.32375 * 15 14 12 30 30 C 1.54104 * 110.26992 * 59.77673 * 12 11 10 31 31 H 1.08994 * 109.18705 * 187.76139 * 30 12 11 32 32 C 1.43979 * 116.42694 * 154.26978 * 9 7 2 33 33 H 0.97002 * 119.99730 * 359.97438 * 1 2 3 34 34 H 1.08997 * 108.77613 * 308.98177 * 10 9 7 35 35 H 1.09004 * 108.77232 * 67.15459 * 10 9 7 36 36 H 1.08996 * 109.75835 * 200.39628 * 11 10 9 37 37 H 1.08995 * 108.49095 * 81.42626 * 11 10 9 38 38 H 1.09003 * 110.00650 * 150.96566 * 14 12 11 39 39 H 1.09010 * 110.00951 * 29.60716 * 14 12 11 40 40 H 1.09005 * 109.43169 * 70.01604 * 20 18 16 41 41 H 1.09001 * 109.44908 * 310.10320 * 20 18 16 42 42 H 1.08999 * 109.69061 * 190.48930 * 21 20 18 43 43 H 1.09000 * 109.72046 * 69.92855 * 21 20 18 44 44 H 1.09001 * 109.69644 * 316.13277 * 28 27 25 45 45 H 1.08994 * 109.69967 * 76.67816 * 28 27 25 46 46 H 1.08995 * 110.56945 * 93.88450 * 29 15 14 47 47 H 1.09004 * 110.56571 * 216.74210 * 29 15 14 48 48 H 1.09001 * 108.11869 * 61.05188 * 32 9 7 49 49 H 1.09001 * 107.95058 * 304.47138 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3966 -1.2123 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0116 -1.2474 -0.4027 9 7 1.4252 -2.3307 0.5086 10 6 0.4006 -2.1293 1.5052 11 6 -0.0741 -3.4179 2.1540 12 6 -0.1659 -4.5564 1.1373 13 1 -0.9454 -4.3895 0.3941 14 6 -0.3818 -5.8619 1.9523 15 7 0.9566 -6.3972 2.2591 16 6 1.2144 -7.5137 2.9686 17 8 0.3017 -8.2225 3.3367 18 6 2.6367 -7.8814 3.3047 19 1 3.2501 -6.9805 3.3213 20 6 2.6797 -8.5524 4.6804 21 6 4.1372 -8.7004 5.1359 22 6 4.9225 -9.3283 4.0147 23 7 6.1171 -9.9097 4.0497 24 7 6.4128 -10.3162 2.8614 25 7 5.4602 -10.0260 2.0398 26 1 5.4447 -10.2268 1.0909 27 6 4.4942 -9.3961 2.7300 28 6 3.1787 -8.8490 2.2444 29 6 1.9697 -5.4993 1.6625 30 6 1.2136 -4.8172 0.5018 31 1 1.1030 -5.5317 -0.3137 32 6 1.9002 -3.5876 -0.0084 33 1 -0.4850 0.8401 0.0004 34 1 0.7884 -1.4657 2.2780 35 1 -0.4580 -1.6510 1.0339 36 1 -1.0544 -3.2640 2.6050 37 1 0.6354 -3.6940 2.9340 38 1 -0.9449 -6.5828 1.3594 39 1 -0.9158 -5.6406 2.8766 40 1 2.2171 -9.5374 4.6180 41 1 2.1349 -7.9408 5.3996 42 1 4.1831 -9.3382 6.0186 43 1 4.5509 -7.7194 5.3697 44 1 3.3263 -8.3182 1.3038 45 1 2.4724 -9.6661 2.0979 46 1 2.3039 -4.7612 2.3915 47 1 2.8147 -6.0740 1.2831 48 1 2.9617 -3.6708 0.2249 49 1 1.7948 -3.5661 -1.0931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088169330.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:56 Heat of formation + Delta-G solvation = 58.940899 kcal Electronic energy + Delta-G solvation = -31086.359319 eV Core-core repulsion = 27049.672638 eV Total energy + Delta-G solvation = -4036.686681 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.48568 -41.67173 -40.02745 -37.66934 -37.15188 -34.93314 -34.22978 -33.14052 -32.07220 -31.35505 -31.27220 -29.24552 -27.16945 -26.04772 -25.01866 -24.16241 -23.82426 -23.57767 -22.83716 -21.05687 -19.94677 -19.34358 -19.09610 -18.87264 -18.14201 -17.31500 -17.08494 -16.84624 -16.32311 -16.10485 -15.66112 -15.58602 -15.18003 -15.02890 -14.86046 -14.72356 -14.60977 -14.38842 -14.20485 -13.69056 -13.58322 -13.43713 -13.17121 -13.06100 -12.90940 -12.84298 -12.60474 -12.48998 -12.27241 -12.17756 -12.08723 -12.01096 -11.74566 -11.59825 -11.44172 -11.32491 -11.25132 -11.18376 -10.82165 -10.48902 -9.92400 -9.66132 -8.64434 -7.66896 -5.34399 0.51215 1.42751 1.46034 1.48507 1.50396 1.59419 1.78732 1.99195 2.53333 3.14153 3.24382 3.33872 3.49775 3.52370 3.69915 3.76303 3.80440 3.86833 3.90015 3.98629 4.15875 4.22943 4.34882 4.38676 4.47517 4.49665 4.51729 4.58113 4.66744 4.68399 4.77396 4.80071 4.83046 4.96264 4.98077 5.03893 5.07839 5.08751 5.11557 5.19866 5.24541 5.30985 5.35240 5.38167 5.47442 5.73069 5.96514 5.98499 6.46609 6.50861 7.10935 7.24871 7.38255 8.09724 8.26471 9.14616 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.002630 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.991386 B =10642.215186 C =11640.574342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.044 4.044 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.279 4.279 8 H 0.065 0.935 9 N -0.597 5.597 10 C 0.165 3.835 11 C -0.110 4.110 12 C -0.079 4.079 13 H 0.091 0.909 14 C 0.117 3.883 15 N -0.612 5.612 16 C 0.539 3.461 17 O -0.575 6.575 18 C -0.093 4.093 19 H 0.112 0.888 20 C -0.095 4.095 21 C -0.029 4.029 22 C -0.030 4.030 23 N -0.293 5.293 24 N -0.116 5.116 25 N -0.363 5.363 26 H 0.465 0.535 27 C 0.003 3.997 28 C -0.028 4.028 29 C 0.113 3.887 30 C -0.094 4.094 31 H 0.098 0.902 32 C 0.173 3.827 33 H 0.248 0.752 34 H -0.012 1.012 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.108 0.892 48 H 0.026 0.974 49 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 -18.999 4.402 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.241 4.241 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.410 4.410 8 H 0.083 0.917 9 N -0.321 5.321 10 C 0.039 3.961 11 C -0.148 4.148 12 C -0.098 4.098 13 H 0.109 0.891 14 C -0.006 4.006 15 N -0.345 5.345 16 C 0.328 3.672 17 O -0.455 6.455 18 C -0.115 4.115 19 H 0.130 0.870 20 C -0.134 4.134 21 C -0.068 4.068 22 C -0.171 4.171 23 N -0.158 5.158 24 N -0.094 5.094 25 N -0.085 5.085 26 H 0.315 0.685 27 C -0.134 4.134 28 C -0.068 4.068 29 C -0.009 4.009 30 C -0.114 4.114 31 H 0.116 0.884 32 C 0.048 3.952 33 H 0.058 0.942 34 H 0.007 0.993 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.132 0.868 45 H 0.118 0.882 46 H 0.087 0.913 47 H 0.126 0.874 48 H 0.044 0.956 49 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 5.621 -20.069 4.945 21.420 hybrid contribution -0.760 1.768 -0.887 2.120 sum 4.861 -18.301 4.057 19.365 Atomic orbital electron populations 1.70183 1.06658 1.25513 1.53814 1.25607 0.95635 1.01246 1.01602 0.85419 0.79033 0.80594 0.76685 1.19199 1.22038 1.21940 1.19459 0.96692 0.88106 1.36711 0.91685 1.42919 1.43904 1.01812 1.43485 1.19984 0.92754 0.94064 0.89281 1.21566 1.00958 0.94719 0.97584 1.21972 0.97813 0.93114 0.96916 0.89071 1.22265 0.84646 0.94353 0.99301 1.48791 1.08509 1.24427 1.52762 1.20443 0.91485 0.78792 0.76474 1.90702 1.48408 1.51512 1.54830 1.21310 0.92010 1.01026 0.97142 0.86990 1.21439 0.95716 1.01878 0.94353 1.20027 0.91728 1.01186 0.93851 1.22160 0.93884 1.04829 0.96201 1.74795 1.14583 1.13261 1.13202 1.78516 1.13423 1.22121 0.95353 1.44700 1.12008 1.38134 1.13652 0.68549 1.21878 0.95611 1.03211 0.92735 1.20071 0.89015 0.98916 0.98781 1.22548 0.91466 0.92422 0.94460 1.21547 0.94946 0.96780 0.98086 0.88418 1.19361 0.96179 0.84435 0.95275 0.94205 0.99348 0.93972 0.91259 0.92520 0.90941 0.91578 0.90927 0.89882 0.88659 0.88557 0.86782 0.88192 0.91284 0.87420 0.95635 0.97238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.11 10.90 21.65 0.24 -51.87 16 2 C -0.04 -2.37 4.92 84.86 0.42 -1.95 16 3 Si 0.95 43.56 29.62 68.60 2.03 45.59 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 7 C -0.28 -14.65 9.27 84.03 0.78 -13.87 16 8 H 0.07 3.36 7.95 -2.91 -0.02 3.33 16 9 N -0.60 -27.55 3.23 -721.85 -2.33 -29.88 16 10 C 0.16 7.42 5.07 86.41 0.44 7.86 16 11 C -0.11 -3.61 4.83 30.20 0.15 -3.47 16 12 C -0.08 -2.17 3.60 -9.62 -0.03 -2.21 16 13 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 14 C 0.12 2.73 6.25 87.04 0.54 3.27 16 15 N -0.61 -12.79 3.34 -808.38 -2.70 -15.49 16 16 C 0.54 11.17 6.82 87.66 0.60 11.77 16 17 O -0.57 -16.12 16.78 -3.03 -0.05 -16.17 16 18 C -0.09 -1.32 1.93 -11.35 -0.02 -1.34 16 19 H 0.11 1.37 7.14 -2.38 -0.02 1.36 16 20 C -0.10 -1.38 4.71 30.78 0.15 -1.24 16 21 C -0.03 -0.41 6.31 29.96 0.19 -0.22 16 22 C -0.03 -0.56 7.11 41.75 0.30 -0.27 16 23 N -0.29 -7.11 12.40 -48.99 -0.61 -7.72 16 24 N -0.12 -2.50 13.40 37.02 0.50 -2.01 16 25 N -0.36 -4.94 6.97 -48.27 -0.34 -5.27 16 26 H 0.47 2.44 8.96 -219.67 -1.97 0.47 16 27 C 0.00 0.04 7.15 41.50 0.30 0.33 16 28 C -0.03 -0.30 5.59 29.94 0.17 -0.14 16 29 C 0.11 2.25 4.96 86.58 0.43 2.68 16 30 C -0.09 -2.42 2.85 -10.97 -0.03 -2.45 16 31 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 32 C 0.17 6.15 5.75 85.82 0.49 6.65 16 33 H 0.25 13.71 8.31 -92.71 -0.77 12.93 16 34 H -0.01 -0.58 8.08 -2.39 -0.02 -0.60 16 35 H 0.04 2.25 5.81 -2.39 -0.01 2.24 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 1.75 6.68 -2.39 -0.02 1.73 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.61 7.78 -2.38 -0.02 1.59 16 40 H 0.07 1.18 8.11 -2.38 -0.02 1.16 16 41 H 0.08 1.21 8.11 -2.39 -0.02 1.19 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.11 0.73 7.77 -2.39 -0.02 0.71 16 45 H 0.10 1.09 8.11 -2.39 -0.02 1.07 16 46 H 0.07 1.57 7.22 -2.39 -0.02 1.55 16 47 H 0.11 1.44 7.34 -2.38 -0.02 1.43 16 48 H 0.03 0.87 7.81 -2.39 -0.02 0.85 16 49 H 0.01 0.37 8.13 -2.39 -0.02 0.35 16 Total: -1.00 -72.13 377.25 0.59 -71.53 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -0.99 Total: 5.89 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 4.85 Total: 5.40 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -5.25 Total: -112.24 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.05 Total: -16.17 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -72.13 0.59 -71.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088169330.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.474 kcal (2) G-P(sol) polarization free energy of solvation -72.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds