Wall clock time and date at job start Sat Apr 11 2020 07:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00428 * 3 2 1 5 5 H 1.48501 * 109.46798 * 30.00539 * 3 2 1 6 6 H 1.48493 * 109.47261 * 150.00169 * 3 2 1 7 7 C 1.38807 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99985 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00359 * 359.97438 * 7 2 1 10 10 C 1.49344 * 125.95075 * 180.02562 * 9 7 2 11 11 C 1.49595 * 104.65078 * 185.40587 * 10 9 7 12 12 H 1.08991 * 107.01298 * 78.39696 * 11 10 9 13 13 C 1.56047 * 101.95695 * 327.51426 * 11 10 9 14 14 H 1.09000 * 109.70721 * 292.45938 * 13 11 10 15 15 C 1.49654 * 125.94540 * 0.02562 * 9 7 2 16 16 C 1.51504 * 104.47077 * 174.90363 * 13 11 10 17 17 H 1.09002 * 114.22435 * 209.56921 * 16 13 11 18 18 C 1.56608 * 102.39032 * 85.05384 * 16 13 11 19 19 C 1.55465 * 106.68646 * 324.62860 * 18 16 13 20 20 C 1.50347 * 126.91590 * 206.30918 * 11 10 9 21 21 H 1.09005 * 113.63932 * 327.82027 * 20 11 10 22 22 C 1.56808 * 102.25023 * 204.61744 * 20 11 10 23 23 N 1.49454 * 107.85474 * 337.77189 * 16 13 11 24 24 C 1.34779 * 122.37056 * 252.21574 * 23 16 13 25 25 O 1.21284 * 119.99955 * 359.97438 * 24 23 16 26 26 C 1.50694 * 120.00035 * 180.02562 * 24 23 16 27 27 C 1.53001 * 109.47384 * 180.02562 * 26 24 23 28 28 N 1.46499 * 109.47162 * 180.02562 * 27 26 24 29 29 C 1.34428 * 126.82050 * 125.00151 * 28 27 26 30 30 N 1.30831 * 108.07686 * 179.97438 * 29 28 27 31 31 C 1.33248 * 109.82954 * 359.97438 * 30 29 28 32 32 N 1.30714 * 108.94519 * 359.75214 * 31 30 29 33 33 H 0.97004 * 120.00182 * 359.97438 * 1 2 3 34 34 H 1.09002 * 110.40110 * 66.61181 * 10 9 7 35 35 H 1.08997 * 110.50153 * 304.24898 * 10 9 7 36 36 H 1.08998 * 110.77900 * 86.50777 * 15 9 7 37 37 H 1.09004 * 110.78480 * 323.06802 * 15 9 7 38 38 H 1.09005 * 110.01136 * 82.59335 * 18 16 13 39 39 H 1.08992 * 110.01676 * 204.02202 * 18 16 13 40 40 H 1.09003 * 109.61350 * 203.90984 * 19 18 16 41 41 H 1.08993 * 110.01001 * 83.43492 * 19 18 16 42 42 H 1.08994 * 110.50805 * 81.92226 * 22 20 11 43 43 H 1.08992 * 110.51033 * 204.67221 * 22 20 11 44 44 H 1.09000 * 109.47174 * 300.00592 * 26 24 23 45 45 H 1.09006 * 109.47262 * 60.00281 * 26 24 23 46 46 H 1.09000 * 109.46678 * 299.99796 * 27 26 24 47 47 H 1.08997 * 109.46976 * 59.99909 * 27 26 24 48 48 H 1.07999 * 125.96756 * 359.92306 * 29 28 27 49 49 H 1.08003 * 125.52485 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.9342 -3.7519 -0.0005 11 6 0.7726 -4.6847 -0.1369 12 1 0.4820 -4.6806 -1.1873 13 6 -0.3528 -3.9122 0.6192 14 1 -0.1175 -3.8677 1.6826 15 6 -0.1630 -2.5432 -0.0005 16 6 -1.5967 -4.7503 0.4055 17 1 -2.5251 -4.1792 0.3985 18 6 -1.4903 -5.8087 1.5549 19 6 0.0214 -6.1262 1.7308 20 6 0.6982 -6.1096 0.3369 21 1 1.6541 -6.6322 0.3020 22 6 -0.3936 -6.7184 -0.6098 23 7 -1.3812 -5.5874 -0.8137 24 6 -2.0172 -5.3451 -1.9770 25 8 -2.7972 -4.4201 -2.0605 26 6 -1.7601 -6.2242 -3.1737 27 6 -2.6006 -5.7360 -4.3552 28 7 -2.3511 -6.5911 -5.5183 29 6 -3.2690 -7.2558 -6.2413 30 7 -2.6458 -7.9024 -7.1927 31 6 -1.3354 -7.6756 -7.1102 32 7 -1.1061 -6.8737 -6.1037 33 1 -0.4850 0.8401 0.0004 34 1 2.4594 -3.9336 0.9372 35 1 2.6144 -3.8663 -0.8444 36 1 -0.5540 -2.5215 -1.0177 37 1 -0.6321 -1.7730 0.6118 38 1 -1.8734 -5.3890 2.4851 39 1 -2.0512 -6.7049 1.2899 40 1 0.1382 -7.1124 2.1801 41 1 0.4878 -5.3771 2.3705 42 1 0.0445 -6.9974 -1.5680 43 1 -0.8691 -7.5794 -0.1403 44 1 -0.7033 -6.1796 -3.4369 45 1 -2.0317 -7.2524 -2.9343 46 1 -3.6575 -5.7805 -4.0921 47 1 -2.3286 -4.7080 -4.5944 48 1 -4.3348 -7.2567 -6.0668 49 1 -0.5849 -8.0842 -7.7707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089774823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:06 Heat of formation + Delta-G solvation = 135.186351 kcal Electronic energy + Delta-G solvation = -31572.109394 eV Core-core repulsion = 27538.728964 eV Total energy + Delta-G solvation = -4033.380430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.23945 -41.47879 -38.77662 -35.88142 -34.98694 -32.87157 -32.01869 -31.58545 -31.40045 -30.41425 -28.94258 -26.87583 -25.95547 -24.75809 -24.47294 -22.18243 -22.10313 -21.52299 -20.96148 -19.95539 -19.60696 -17.93418 -17.24943 -16.89789 -16.57092 -16.31319 -15.88897 -15.62901 -15.09530 -15.04842 -14.58862 -14.34729 -14.24553 -14.01371 -13.38395 -13.35167 -13.05510 -12.93948 -12.64611 -12.58798 -12.30899 -12.10219 -11.95593 -11.56866 -11.53996 -11.45270 -11.11134 -10.94065 -10.88005 -10.65306 -10.63203 -10.25449 -10.21357 -10.04910 -10.02026 -9.95849 -9.77086 -9.65718 -9.43768 -9.16270 -8.64068 -8.41752 -6.81128 -5.60281 -3.01626 1.43190 2.04771 2.70397 2.76840 2.91532 3.42429 3.46903 3.49106 4.10863 4.17532 4.36821 4.47938 4.48829 4.55253 4.70770 4.75745 4.85255 4.93830 5.01631 5.06936 5.13266 5.25153 5.29135 5.43123 5.46307 5.48059 5.49300 5.55742 5.61508 5.79750 5.90652 5.91628 5.99231 6.02107 6.14609 6.22536 6.25392 6.32625 6.39483 6.44530 6.56033 6.56685 6.67609 6.84349 7.05039 7.52814 7.58365 7.62770 7.87005 7.88695 8.22805 8.33499 9.21746 9.83570 10.50937 11.44250 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010719 B = 0.003241 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.612263 B = 8636.447141 C =10057.691181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.150 3.850 11 C -0.113 4.113 12 H 0.064 0.936 13 C -0.135 4.135 14 H 0.081 0.919 15 C 0.172 3.828 16 C 0.162 3.838 17 H 0.112 0.888 18 C -0.131 4.131 19 C -0.117 4.117 20 C -0.080 4.080 21 H 0.097 0.903 22 C 0.112 3.888 23 N -0.613 5.613 24 C 0.524 3.476 25 O -0.538 6.538 26 C -0.149 4.149 27 C 0.144 3.856 28 N -0.376 5.376 29 C 0.254 3.746 30 N -0.551 5.551 31 C 0.194 3.806 32 N -0.316 5.316 33 H 0.251 0.749 34 H 0.021 0.979 35 H 0.026 0.974 36 H 0.013 0.987 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.111 0.889 47 H 0.102 0.898 48 H 0.219 0.781 49 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.914 -19.896 -3.024 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.207 4.207 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.336 5.336 10 C 0.025 3.975 11 C -0.133 4.133 12 H 0.082 0.918 13 C -0.155 4.155 14 H 0.099 0.901 15 C 0.048 3.952 16 C 0.060 3.940 17 H 0.130 0.870 18 C -0.169 4.169 19 C -0.154 4.154 20 C -0.100 4.100 21 H 0.115 0.885 22 C -0.009 4.009 23 N -0.348 5.348 24 C 0.311 3.689 25 O -0.416 6.416 26 C -0.190 4.190 27 C 0.022 3.978 28 N -0.167 5.167 29 C -0.043 4.043 30 N -0.279 5.279 31 C -0.109 4.109 32 N -0.144 5.144 33 H 0.062 0.938 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.031 0.969 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.124 0.876 45 H 0.112 0.888 46 H 0.129 0.871 47 H 0.120 0.880 48 H 0.235 0.765 49 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.841 -19.047 -3.078 20.159 hybrid contribution 0.435 0.877 -0.056 0.981 sum -5.406 -18.170 -3.135 19.215 Atomic orbital electron populations 1.69826 1.04796 1.24676 1.57533 1.24769 0.95707 0.97553 1.02708 0.86104 0.78486 0.83568 0.77525 1.21730 1.21688 1.20786 1.19067 0.90384 0.82494 1.43001 0.90618 1.45651 1.01343 0.99231 1.87361 1.20428 0.93323 0.86064 0.97652 1.21281 0.98074 0.92935 1.01001 0.91803 1.22813 0.93448 0.98427 1.00849 0.90061 1.21317 0.84253 0.91654 0.97981 1.22122 0.99335 0.91153 0.81359 0.86967 1.23171 0.96381 0.98775 0.98580 1.22471 0.94871 1.01329 0.96746 1.21925 0.97198 0.96284 0.94545 0.88478 1.23459 0.89198 0.88404 0.99862 1.50152 1.42903 1.30807 1.10920 1.20013 0.80633 0.84824 0.83436 1.90758 1.36284 1.31186 1.83354 1.21854 1.03509 1.00435 0.93181 1.21601 1.01487 0.93896 0.80779 1.50654 1.04788 1.36776 1.24465 1.26092 0.98289 0.90999 0.88941 1.70545 1.05996 1.27015 1.24323 1.26022 0.93268 0.95644 0.95939 1.78090 1.02712 1.20658 1.12904 0.93803 0.96114 0.95638 0.96862 0.87880 0.90851 0.91414 0.92130 0.90767 0.90555 0.90527 0.87587 0.88774 0.87095 0.88005 0.76519 0.76774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.49 10.13 55.49 0.56 -26.93 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.22 -6.28 10.32 -15.06 -0.16 -6.44 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.61 -15.81 3.50 -171.14 -0.60 -16.41 16 10 C 0.15 3.11 7.20 -4.14 -0.03 3.08 16 11 C -0.11 -1.90 2.11 -91.99 -0.19 -2.09 16 12 H 0.06 1.19 6.22 -51.93 -0.32 0.86 16 13 C -0.14 -2.47 2.34 -90.52 -0.21 -2.68 16 14 H 0.08 1.50 5.98 -51.93 -0.31 1.19 16 15 C 0.17 4.24 5.68 -3.06 -0.02 4.23 16 16 C 0.16 2.43 4.28 -65.10 -0.28 2.15 16 17 H 0.11 1.85 7.72 -51.93 -0.40 1.45 16 18 C -0.13 -1.46 5.50 -23.48 -0.13 -1.59 16 19 C -0.12 -1.27 5.38 -24.38 -0.13 -1.40 16 20 C -0.08 -0.94 4.42 -88.85 -0.39 -1.33 16 21 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 22 C 0.11 1.13 5.53 0.86 0.00 1.14 16 23 N -0.61 -8.18 1.82 -156.00 -0.28 -8.46 16 24 C 0.52 7.45 7.65 -10.99 -0.08 7.37 16 25 O -0.54 -9.71 15.87 5.55 0.09 -9.62 16 26 C -0.15 -1.58 4.67 -27.89 -0.13 -1.71 16 27 C 0.14 1.47 5.84 -4.04 -0.02 1.45 16 28 N -0.38 -3.98 3.69 -62.63 -0.23 -4.21 16 29 C 0.25 2.30 12.63 -90.66 -1.14 1.15 16 30 N -0.55 -6.10 11.19 -15.83 -0.18 -6.28 16 31 C 0.19 2.07 13.03 -91.81 -1.20 0.87 16 32 N -0.32 -3.89 12.58 29.29 0.37 -3.52 16 33 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 2.88 5.95 -51.93 -0.31 2.57 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.66 7.20 -51.93 -0.37 0.29 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.93 6.71 -51.93 -0.35 0.58 16 42 H 0.08 0.70 6.90 -51.93 -0.36 0.34 16 43 H 0.08 0.61 7.12 -51.93 -0.37 0.24 16 44 H 0.11 1.22 7.70 -51.93 -0.40 0.82 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.11 0.90 8.04 -51.93 -0.42 0.48 16 47 H 0.10 1.24 8.10 -51.93 -0.42 0.81 16 48 H 0.22 0.99 8.06 -52.49 -0.42 0.57 16 49 H 0.22 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -35.80 378.59 -11.18 -46.98 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.38 Total: 1.44 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -4.21 Total: 3.77 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: -0.36 Total: -65.80 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.80 -11.18 -46.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089774823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.165 kcal (2) G-P(sol) polarization free energy of solvation -35.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds