Wall clock time and date at job start Sat Apr 11 2020 07:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00428 * 3 2 1 5 5 H 1.48501 * 109.46798 * 30.00539 * 3 2 1 6 6 H 1.48493 * 109.47261 * 150.00169 * 3 2 1 7 7 C 1.38807 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99985 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00359 * 359.97438 * 7 2 1 10 10 C 1.49344 * 125.95075 * 180.02562 * 9 7 2 11 11 C 1.49595 * 104.65078 * 185.40587 * 10 9 7 12 12 H 1.08991 * 107.01298 * 78.39696 * 11 10 9 13 13 C 1.56047 * 101.95695 * 327.51426 * 11 10 9 14 14 H 1.09000 * 109.70721 * 292.45938 * 13 11 10 15 15 C 1.49654 * 125.94540 * 0.02562 * 9 7 2 16 16 C 1.51504 * 104.47077 * 174.90363 * 13 11 10 17 17 H 1.09002 * 114.22435 * 209.56921 * 16 13 11 18 18 C 1.56608 * 102.39032 * 85.05384 * 16 13 11 19 19 C 1.55465 * 106.68646 * 324.62860 * 18 16 13 20 20 C 1.50347 * 126.91590 * 206.30918 * 11 10 9 21 21 H 1.09005 * 113.63932 * 327.82027 * 20 11 10 22 22 C 1.56808 * 102.25023 * 204.61744 * 20 11 10 23 23 N 1.49454 * 107.85474 * 337.77189 * 16 13 11 24 24 C 1.34779 * 122.37056 * 252.21574 * 23 16 13 25 25 O 1.21284 * 119.99955 * 359.97438 * 24 23 16 26 26 C 1.50694 * 120.00035 * 180.02562 * 24 23 16 27 27 C 1.53001 * 109.47384 * 180.02562 * 26 24 23 28 28 N 1.46499 * 109.47162 * 180.02562 * 27 26 24 29 29 C 1.34428 * 126.82050 * 125.00151 * 28 27 26 30 30 N 1.30831 * 108.07686 * 179.97438 * 29 28 27 31 31 C 1.33248 * 109.82954 * 359.97438 * 30 29 28 32 32 N 1.30714 * 108.94519 * 359.75214 * 31 30 29 33 33 H 0.97004 * 120.00182 * 359.97438 * 1 2 3 34 34 H 1.09002 * 110.40110 * 66.61181 * 10 9 7 35 35 H 1.08997 * 110.50153 * 304.24898 * 10 9 7 36 36 H 1.08998 * 110.77900 * 86.50777 * 15 9 7 37 37 H 1.09004 * 110.78480 * 323.06802 * 15 9 7 38 38 H 1.09005 * 110.01136 * 82.59335 * 18 16 13 39 39 H 1.08992 * 110.01676 * 204.02202 * 18 16 13 40 40 H 1.09003 * 109.61350 * 203.90984 * 19 18 16 41 41 H 1.08993 * 110.01001 * 83.43492 * 19 18 16 42 42 H 1.08994 * 110.50805 * 81.92226 * 22 20 11 43 43 H 1.08992 * 110.51033 * 204.67221 * 22 20 11 44 44 H 1.09000 * 109.47174 * 300.00592 * 26 24 23 45 45 H 1.09006 * 109.47262 * 60.00281 * 26 24 23 46 46 H 1.09000 * 109.46678 * 299.99796 * 27 26 24 47 47 H 1.08997 * 109.46976 * 59.99909 * 27 26 24 48 48 H 1.07999 * 125.96756 * 359.92306 * 29 28 27 49 49 H 1.08003 * 125.52485 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.9342 -3.7519 -0.0005 11 6 0.7726 -4.6847 -0.1369 12 1 0.4820 -4.6806 -1.1873 13 6 -0.3528 -3.9122 0.6192 14 1 -0.1175 -3.8677 1.6826 15 6 -0.1630 -2.5432 -0.0005 16 6 -1.5967 -4.7503 0.4055 17 1 -2.5251 -4.1792 0.3985 18 6 -1.4903 -5.8087 1.5549 19 6 0.0214 -6.1262 1.7308 20 6 0.6982 -6.1096 0.3369 21 1 1.6541 -6.6322 0.3020 22 6 -0.3936 -6.7184 -0.6098 23 7 -1.3812 -5.5874 -0.8137 24 6 -2.0172 -5.3451 -1.9770 25 8 -2.7972 -4.4201 -2.0605 26 6 -1.7601 -6.2242 -3.1737 27 6 -2.6006 -5.7360 -4.3552 28 7 -2.3511 -6.5911 -5.5183 29 6 -3.2690 -7.2558 -6.2413 30 7 -2.6458 -7.9024 -7.1927 31 6 -1.3354 -7.6756 -7.1102 32 7 -1.1061 -6.8737 -6.1037 33 1 -0.4850 0.8401 0.0004 34 1 2.4594 -3.9336 0.9372 35 1 2.6144 -3.8663 -0.8444 36 1 -0.5540 -2.5215 -1.0177 37 1 -0.6321 -1.7730 0.6118 38 1 -1.8734 -5.3890 2.4851 39 1 -2.0512 -6.7049 1.2899 40 1 0.1382 -7.1124 2.1801 41 1 0.4878 -5.3771 2.3705 42 1 0.0445 -6.9974 -1.5680 43 1 -0.8691 -7.5794 -0.1403 44 1 -0.7033 -6.1796 -3.4369 45 1 -2.0317 -7.2524 -2.9343 46 1 -3.6575 -5.7805 -4.0921 47 1 -2.3286 -4.7080 -4.5944 48 1 -4.3348 -7.2567 -6.0668 49 1 -0.5849 -8.0842 -7.7707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089774823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:05 Heat of formation + Delta-G solvation = 113.989845 kcal Electronic energy + Delta-G solvation = -31573.028544 eV Core-core repulsion = 27538.728964 eV Total energy + Delta-G solvation = -4034.299580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.01086 -42.67386 -39.97562 -37.53687 -35.84874 -34.41979 -33.53593 -32.74869 -32.18783 -31.29046 -30.73390 -28.46884 -27.16342 -26.33559 -25.35371 -23.45934 -22.91173 -22.49150 -22.25224 -21.52538 -20.72429 -18.96373 -18.74482 -18.41241 -17.58429 -17.41629 -17.23514 -16.69521 -16.46434 -16.05687 -15.85402 -15.53603 -15.17225 -15.06851 -14.96827 -14.57316 -14.34946 -14.18199 -14.04702 -13.66975 -13.45619 -13.26613 -13.09195 -12.99357 -12.90047 -12.71970 -12.59808 -12.34390 -12.27438 -12.12236 -12.02450 -11.89762 -11.81465 -11.36834 -11.22795 -11.02270 -10.84546 -10.83022 -10.76615 -10.67882 -10.50022 -9.56098 -8.95401 -7.80548 -5.25566 0.69001 1.26382 1.40378 1.43428 1.52138 1.61158 1.92802 2.02195 2.44350 3.28013 3.33507 3.43661 3.46329 3.46750 3.53127 3.61246 3.73223 3.82022 4.02274 4.08467 4.17827 4.22273 4.22610 4.28635 4.35434 4.41002 4.51783 4.62528 4.64471 4.69314 4.73941 4.81492 4.86327 4.90868 4.98734 5.05023 5.06194 5.20192 5.25457 5.31443 5.39302 5.41877 5.47687 5.48235 5.58689 5.66567 5.75805 5.87137 6.19769 6.48386 7.01055 7.11531 7.14076 7.68825 8.37500 9.21870 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010719 B = 0.003241 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.612263 B = 8636.447141 C =10057.691181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.072 4.072 3 Si 0.981 3.019 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.238 4.238 8 H 0.081 0.919 9 N -0.634 5.634 10 C 0.144 3.856 11 C -0.093 4.093 12 H 0.040 0.960 13 C -0.126 4.126 14 H 0.081 0.919 15 C 0.181 3.819 16 C 0.154 3.846 17 H 0.085 0.915 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.073 4.073 21 H 0.128 0.872 22 C 0.114 3.886 23 N -0.614 5.614 24 C 0.516 3.484 25 O -0.589 6.589 26 C -0.131 4.131 27 C 0.149 3.851 28 N -0.383 5.383 29 C 0.264 3.736 30 N -0.576 5.576 31 C 0.194 3.806 32 N -0.355 5.355 33 H 0.244 0.756 34 H 0.034 0.966 35 H 0.023 0.977 36 H -0.036 1.036 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.098 0.902 45 H 0.127 0.873 46 H 0.134 0.866 47 H 0.071 0.929 48 H 0.259 0.741 49 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.417 -23.853 -2.301 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.265 4.265 3 Si 0.809 3.191 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.361 5.361 10 C 0.021 3.979 11 C -0.112 4.112 12 H 0.059 0.941 13 C -0.146 4.146 14 H 0.100 0.900 15 C 0.057 3.943 16 C 0.051 3.949 17 H 0.103 0.897 18 C -0.154 4.154 19 C -0.150 4.150 20 C -0.092 4.092 21 H 0.145 0.855 22 C -0.005 4.005 23 N -0.348 5.348 24 C 0.304 3.696 25 O -0.470 6.470 26 C -0.172 4.172 27 C 0.027 3.973 28 N -0.173 5.173 29 C -0.032 4.032 30 N -0.304 5.304 31 C -0.108 4.108 32 N -0.184 5.184 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.041 0.959 36 H -0.018 1.018 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.109 0.891 43 H 0.137 0.863 44 H 0.116 0.884 45 H 0.145 0.855 46 H 0.152 0.848 47 H 0.089 0.911 48 H 0.275 0.725 49 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -5.293 -23.066 -2.343 23.781 hybrid contribution 0.303 2.164 -0.340 2.211 sum -4.990 -20.902 -2.683 21.657 Atomic orbital electron populations 1.70133 1.06378 1.24838 1.58704 1.25688 0.96613 1.01141 1.03014 0.85030 0.77740 0.78962 0.77322 1.21721 1.21856 1.18956 1.19494 0.90967 0.83919 1.42318 0.90081 1.46046 1.02081 1.00834 1.87171 1.20629 0.94798 0.84595 0.97915 1.21239 0.94780 0.95652 0.99576 0.94120 1.22603 0.96632 0.95152 1.00203 0.90042 1.20932 0.83744 0.94809 0.94810 1.21999 0.96271 0.92160 0.84504 0.89707 1.23116 0.97503 0.98122 0.96636 1.22473 0.93703 1.03033 0.95780 1.22047 0.99410 0.92213 0.95527 0.85454 1.23779 0.87986 0.87974 1.00781 1.50303 1.43173 1.31211 1.10086 1.20681 0.79929 0.84524 0.84456 1.90735 1.38689 1.33391 1.84214 1.21725 1.02975 1.01101 0.91367 1.21515 1.02726 0.92358 0.80719 1.50617 1.04770 1.37221 1.24714 1.26937 0.99634 0.89139 0.87512 1.70596 1.06305 1.28162 1.25320 1.26586 0.93871 0.94755 0.95603 1.78046 1.04142 1.22007 1.14156 0.94601 0.94828 0.95867 1.01783 0.91973 0.90378 0.88490 0.87951 0.92741 0.89069 0.86309 0.88398 0.85504 0.84790 0.91068 0.72511 0.74350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.57 10.13 21.65 0.22 -60.35 16 2 C -0.07 -4.34 5.49 84.86 0.47 -3.87 16 3 Si 0.98 47.95 29.55 68.60 2.03 49.98 16 4 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.24 -14.07 10.32 84.03 0.87 -13.20 16 8 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 9 N -0.63 -34.61 3.50 -695.36 -2.43 -37.05 16 10 C 0.14 6.05 7.20 84.74 0.61 6.66 16 11 C -0.09 -3.06 2.11 -11.68 -0.02 -3.09 16 12 H 0.04 1.53 6.22 -2.39 -0.01 1.51 16 13 C -0.13 -4.76 2.34 -10.73 -0.03 -4.78 16 14 H 0.08 3.07 5.98 -2.39 -0.01 3.06 16 15 C 0.18 9.70 5.68 85.26 0.48 10.18 16 16 C 0.15 4.62 4.28 45.19 0.19 4.81 16 17 H 0.08 3.00 7.72 -2.39 -0.02 2.98 16 18 C -0.12 -2.20 5.50 32.70 0.18 -2.02 16 19 C -0.11 -1.93 5.38 32.12 0.17 -1.76 16 20 C -0.07 -1.41 4.42 -9.64 -0.04 -1.45 16 21 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16 22 C 0.11 1.80 5.53 86.72 0.48 2.28 16 23 N -0.61 -15.59 1.82 -765.86 -1.39 -16.98 16 24 C 0.52 14.69 7.65 87.65 0.67 15.36 16 25 O -0.59 -22.52 15.87 -3.04 -0.05 -22.57 16 26 C -0.13 -2.61 4.67 29.85 0.14 -2.47 16 27 C 0.15 2.98 5.84 86.38 0.50 3.49 16 28 N -0.38 -7.65 3.69 -352.07 -1.30 -8.95 16 29 C 0.26 4.22 12.63 180.36 2.28 6.49 16 30 N -0.58 -11.75 11.19 -204.00 -2.28 -14.03 16 31 C 0.19 3.90 13.03 180.76 2.36 6.26 16 32 N -0.36 -8.50 12.58 -61.24 -0.77 -9.27 16 33 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 36 H -0.04 -2.21 8.14 -2.39 -0.02 -2.23 16 37 H 0.06 3.81 5.95 -2.38 -0.01 3.80 16 38 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.10 1.35 7.20 -2.39 -0.02 1.34 16 40 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 1.19 6.71 -2.39 -0.02 1.18 16 42 H 0.09 1.24 6.90 -2.39 -0.02 1.22 16 43 H 0.12 1.03 7.12 -2.39 -0.02 1.01 16 44 H 0.10 2.16 7.70 -2.39 -0.02 2.14 16 45 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.13 2.02 8.04 -2.39 -0.02 2.00 16 47 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 48 H 0.26 1.50 8.06 -2.91 -0.02 1.48 16 49 H 0.24 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -87.37 378.59 4.29 -83.09 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.96 Total: 13.24 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 9.31 Total: 22.89 kcal Atomic # 7 Polarization: -138.67 SS G_CDS: -7.96 Total: -146.62 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -87.37 4.29 -83.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089774823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.077 kcal (2) G-P(sol) polarization free energy of solvation -87.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds