Wall clock time and date at job start Sat Apr 11 2020 07:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86803 * 120.00060 * 2 1 4 4 H 1.48494 * 109.47423 * 270.00015 * 3 2 1 5 5 H 1.48498 * 109.46953 * 30.00518 * 3 2 1 6 6 H 1.48508 * 109.47254 * 150.00106 * 3 2 1 7 7 C 1.38815 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99981 * 189.10153 * 7 2 1 9 9 N 1.36937 * 119.99651 * 9.09767 * 7 2 1 10 10 C 1.48156 * 127.83719 * 15.59146 * 9 7 2 11 11 C 1.54386 * 104.57214 * 140.35435 * 10 9 7 12 12 H 1.09003 * 110.80460 * 263.80468 * 11 10 9 13 13 C 1.54159 * 105.00180 * 24.01647 * 11 10 9 14 14 H 1.09000 * 110.99027 * 239.79138 * 13 11 10 15 15 C 1.48151 * 127.83535 * 195.54695 * 9 7 2 16 16 C 1.53262 * 109.36468 * 116.42421 * 13 11 10 17 17 H 1.09010 * 110.51441 * 182.53382 * 16 13 11 18 18 C 1.53333 * 108.66565 * 60.54220 * 16 13 11 19 19 C 1.54215 * 109.79524 * 299.66540 * 18 16 13 20 20 C 1.52976 * 109.08418 * 141.63824 * 11 10 9 21 21 H 1.09000 * 109.64491 * 65.51837 * 20 11 10 22 22 C 1.53607 * 109.11420 * 305.42099 * 20 11 10 23 23 N 1.47581 * 106.72011 * 300.24382 * 22 20 11 24 24 C 1.34777 * 122.01744 * 180.02562 * 23 22 20 25 25 O 1.21281 * 119.99576 * 180.02562 * 24 23 22 26 26 C 1.50698 * 120.00227 * 0.02693 * 24 23 22 27 27 C 1.53006 * 109.46904 * 179.97438 * 26 24 23 28 28 N 1.46503 * 109.46798 * 180.02562 * 27 26 24 29 29 C 1.34433 * 126.82071 * 124.71538 * 28 27 26 30 30 N 1.30832 * 108.07582 * 179.88923 * 29 28 27 31 31 C 1.33239 * 109.82638 * 0.38019 * 30 29 28 32 32 N 1.30710 * 108.94777 * 359.76346 * 31 30 29 33 33 H 0.97002 * 120.00315 * 359.97438 * 1 2 3 34 34 H 1.08999 * 110.41889 * 21.57944 * 10 9 7 35 35 H 1.09001 * 110.41860 * 259.12712 * 10 9 7 36 36 H 1.08996 * 110.40287 * 338.31475 * 15 9 7 37 37 H 1.08999 * 110.40123 * 100.74016 * 15 9 7 38 38 H 1.09002 * 109.45032 * 59.39187 * 18 16 13 39 39 H 1.09006 * 109.44390 * 179.29727 * 18 16 13 40 40 H 1.09007 * 109.72528 * 240.16211 * 19 18 16 41 41 H 1.08996 * 109.73779 * 120.07027 * 19 18 16 42 42 H 1.08994 * 110.00217 * 58.91254 * 22 20 11 43 43 H 1.09006 * 109.99969 * 180.30925 * 22 20 11 44 44 H 1.09000 * 109.47373 * 299.99642 * 26 24 23 45 45 H 1.09000 * 109.46980 * 59.99950 * 26 24 23 46 46 H 1.09000 * 109.47147 * 300.00188 * 27 26 24 47 47 H 1.09000 * 109.47010 * 60.00376 * 27 26 24 48 48 H 1.08002 * 125.95979 * 0.03556 * 29 28 27 49 49 H 1.08004 * 125.52568 * 179.79200 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0800 -1.2080 0.1474 9 7 1.3385 -2.3805 -0.1886 10 6 -0.0342 -2.5704 -0.7127 11 6 0.0655 -3.8152 -1.6206 12 1 0.2030 -3.5248 -2.6621 13 6 1.2847 -4.5973 -1.0930 14 1 2.0420 -4.7096 -1.8688 15 6 1.8198 -3.7546 0.0851 16 6 0.8234 -5.9578 -0.5588 17 1 1.6653 -6.5090 -0.1397 18 6 0.1715 -6.7397 -1.7054 19 6 -1.0454 -5.9602 -2.2436 20 6 -1.2010 -4.6573 -1.4556 21 1 -2.0612 -4.1027 -1.8305 22 6 -1.4019 -4.9772 0.0333 23 7 -0.2054 -5.7210 0.4729 24 6 -0.0607 -6.1571 1.7400 25 8 0.9384 -6.7648 2.0617 26 6 -1.1403 -5.8897 2.7569 27 6 -0.7303 -6.4866 4.1048 28 7 -1.7801 -6.2272 5.0932 29 6 -2.4213 -7.1383 5.8455 30 7 -3.2824 -6.5070 6.6015 31 6 -3.2261 -5.1987 6.3553 32 7 -2.3207 -4.9780 5.4387 33 1 -0.4851 0.8400 0.0004 34 1 -0.3436 -1.7008 -1.2925 35 1 -0.7319 -2.7511 0.1050 36 1 2.9093 -3.7786 0.1055 37 1 1.4130 -4.1189 1.0285 38 1 0.8940 -6.8731 -2.5106 39 1 -0.1504 -7.7157 -1.3420 40 1 -1.9473 -6.5617 -2.1296 41 1 -0.8976 -5.7295 -3.2985 42 1 -1.4857 -4.0531 0.6052 43 1 -2.2987 -5.5823 0.1669 44 1 -1.2810 -4.8141 2.8632 45 1 -2.0726 -6.3472 2.4258 46 1 -0.5899 -7.5622 3.9982 47 1 0.2021 -6.0294 4.4360 48 1 -2.2530 -8.2050 5.8303 49 1 -3.8302 -4.4431 6.8356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089774826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:10 Heat of formation + Delta-G solvation = 93.527246 kcal Electronic energy + Delta-G solvation = -31808.416483 eV Core-core repulsion = 27773.229578 eV Total energy + Delta-G solvation = -4035.186905 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.16016 -41.17166 -38.69370 -35.61007 -34.94008 -33.15137 -32.24433 -31.91760 -31.32070 -30.41168 -29.10434 -26.65500 -25.83417 -24.87996 -24.54487 -22.25681 -22.10137 -21.47642 -20.63745 -20.53586 -19.62559 -17.93350 -17.02706 -16.79163 -16.46086 -16.16580 -15.93728 -15.59206 -15.18679 -14.81313 -14.65975 -14.24964 -14.20728 -14.14469 -13.54295 -13.36867 -13.12680 -12.96999 -12.70428 -12.52621 -12.18625 -12.16216 -11.86916 -11.81966 -11.59043 -11.38088 -11.17834 -11.08697 -10.84300 -10.68708 -10.59404 -10.17741 -10.03635 -9.99114 -9.90137 -9.87044 -9.78279 -9.66399 -9.56801 -9.45414 -8.63174 -8.33636 -6.82631 -5.79045 -3.12207 1.51442 2.12769 2.69685 2.85161 3.08769 3.37803 3.43644 3.45156 4.17485 4.26945 4.45230 4.48644 4.62085 4.73554 4.80065 4.84751 4.94115 5.01704 5.13397 5.16933 5.27383 5.36957 5.41100 5.48557 5.52114 5.58741 5.62902 5.69687 5.76907 5.79666 5.92050 5.94479 6.01643 6.07532 6.10289 6.24916 6.28519 6.31251 6.36726 6.46592 6.56991 6.64330 6.65901 6.82859 6.99177 7.35048 7.53486 7.58712 7.72119 7.95294 8.22173 8.22948 9.12608 9.75347 10.53385 11.34977 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.003805 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.569478 B = 7357.791332 C = 9391.840953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.074 0.926 9 N -0.595 5.595 10 C 0.160 3.840 11 C -0.104 4.104 12 H 0.070 0.930 13 C -0.108 4.108 14 H 0.078 0.922 15 C 0.134 3.866 16 C 0.151 3.849 17 H 0.100 0.900 18 C -0.125 4.125 19 C -0.110 4.110 20 C -0.089 4.089 21 H 0.085 0.915 22 C 0.109 3.891 23 N -0.592 5.592 24 C 0.528 3.472 25 O -0.553 6.553 26 C -0.151 4.151 27 C 0.147 3.853 28 N -0.377 5.377 29 C 0.251 3.749 30 N -0.551 5.551 31 C 0.194 3.806 32 N -0.311 5.311 33 H 0.253 0.747 34 H 0.082 0.918 35 H 0.026 0.974 36 H 0.040 0.960 37 H 0.024 0.976 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.100 0.900 48 H 0.218 0.782 49 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.506 -16.702 1.262 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.092 0.908 9 N -0.318 5.318 10 C 0.034 3.966 11 C -0.124 4.124 12 H 0.089 0.911 13 C -0.129 4.129 14 H 0.097 0.903 15 C 0.007 3.993 16 C 0.048 3.952 17 H 0.118 0.882 18 C -0.163 4.163 19 C -0.148 4.148 20 C -0.108 4.108 21 H 0.103 0.897 22 C -0.013 4.013 23 N -0.325 5.325 24 C 0.316 3.684 25 O -0.432 6.432 26 C -0.191 4.191 27 C 0.025 3.975 28 N -0.168 5.168 29 C -0.046 4.046 30 N -0.279 5.279 31 C -0.109 4.109 32 N -0.138 5.138 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.130 0.870 45 H 0.113 0.887 46 H 0.127 0.873 47 H 0.118 0.882 48 H 0.234 0.766 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.965 -16.192 1.392 17.311 hybrid contribution 0.400 0.805 -0.138 0.909 sum -5.564 -15.387 1.254 16.410 Atomic orbital electron populations 1.69880 1.04992 1.25241 1.56148 1.24843 0.95605 0.97793 1.01938 0.86154 0.78771 0.83483 0.77583 1.21579 1.21683 1.20619 1.19003 0.90754 0.82496 1.43007 0.90807 1.44906 1.13483 0.99873 1.73526 1.21731 0.87143 0.93740 0.93979 1.22292 0.92188 0.97224 1.00718 0.91135 1.22542 0.97747 0.93535 0.99083 0.90330 1.21682 0.96778 0.86599 0.94217 1.21347 0.90444 0.96329 0.87041 0.88231 1.22100 0.98026 0.98342 0.97822 1.21728 0.97575 0.95946 0.99555 1.21376 0.99779 0.96201 0.93477 0.89686 1.22187 0.86387 0.96349 0.96360 1.48362 1.20450 1.54748 1.08892 1.20016 0.87372 0.78647 0.82379 1.90685 1.31048 1.42447 1.79065 1.21857 0.98881 1.05289 0.93102 1.21564 0.88158 1.02610 0.85200 1.50655 1.30206 1.04761 1.31159 1.26067 0.90428 0.98293 0.89778 1.70536 1.24212 1.05848 1.27274 1.26039 0.96571 0.93334 0.94956 1.78159 1.14608 1.02186 1.18864 0.93699 0.89925 0.95669 0.94136 0.95790 0.91016 0.92115 0.92344 0.91622 0.89493 0.91879 0.87035 0.88664 0.87282 0.88169 0.76604 0.76739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 10.86 55.49 0.60 -25.75 16 2 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 3 Si 0.91 22.00 29.56 -169.99 -5.03 16.97 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.22 -6.23 10.35 -15.06 -0.16 -6.39 16 8 H 0.07 2.02 7.84 -52.49 -0.41 1.61 16 9 N -0.59 -14.88 3.38 -168.84 -0.57 -15.45 16 10 C 0.16 3.57 5.20 -2.40 -0.01 3.56 16 11 C -0.10 -1.77 3.11 -89.30 -0.28 -2.04 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.11 -1.81 3.17 -89.14 -0.28 -2.09 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 15 C 0.13 2.82 6.61 -2.39 -0.02 2.80 16 16 C 0.15 2.15 2.94 -67.01 -0.20 1.95 16 17 H 0.10 1.51 7.19 -51.92 -0.37 1.14 16 18 C -0.12 -1.41 5.87 -25.92 -0.15 -1.57 16 19 C -0.11 -1.20 5.77 -26.06 -0.15 -1.35 16 20 C -0.09 -1.18 2.84 -90.28 -0.26 -1.44 16 21 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 22 C 0.11 1.44 4.96 -3.14 -0.02 1.43 16 23 N -0.59 -8.36 1.91 -163.68 -0.31 -8.68 16 24 C 0.53 7.56 6.97 -10.99 -0.08 7.49 16 25 O -0.55 -9.22 15.56 5.56 0.09 -9.13 16 26 C -0.15 -1.76 4.85 -27.88 -0.14 -1.90 16 27 C 0.15 1.54 5.84 -4.04 -0.02 1.52 16 28 N -0.38 -4.27 3.69 -62.62 -0.23 -4.50 16 29 C 0.25 2.42 12.63 -90.65 -1.14 1.27 16 30 N -0.55 -6.52 11.19 -15.83 -0.18 -6.70 16 31 C 0.19 2.29 13.03 -91.82 -1.20 1.09 16 32 N -0.31 -4.24 12.57 29.29 0.37 -3.88 16 33 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.08 2.12 6.51 -51.93 -0.34 1.78 16 35 H 0.03 0.59 5.28 -51.93 -0.27 0.31 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.02 0.53 6.29 -51.93 -0.33 0.21 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.36 5.72 -51.93 -0.30 1.06 16 43 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 44 H 0.11 1.54 8.11 -51.93 -0.42 1.11 16 45 H 0.10 0.94 8.13 -51.93 -0.42 0.52 16 46 H 0.11 0.87 8.04 -51.93 -0.42 0.46 16 47 H 0.10 1.20 8.10 -51.93 -0.42 0.78 16 48 H 0.22 1.06 8.06 -52.49 -0.42 0.64 16 49 H 0.22 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -33.91 378.49 -11.23 -45.14 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.49 Total: 2.17 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -4.19 Total: 4.10 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -0.32 Total: -64.95 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.91 -11.23 -45.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089774826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.663 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds