Wall clock time and date at job start Sat Apr 11 2020 07:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86803 * 120.00060 * 2 1 4 4 H 1.48494 * 109.47423 * 270.00015 * 3 2 1 5 5 H 1.48498 * 109.46953 * 30.00518 * 3 2 1 6 6 H 1.48508 * 109.47254 * 150.00106 * 3 2 1 7 7 C 1.38815 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99981 * 189.10153 * 7 2 1 9 9 N 1.36937 * 119.99651 * 9.09767 * 7 2 1 10 10 C 1.48156 * 127.83719 * 15.59146 * 9 7 2 11 11 C 1.54386 * 104.57214 * 140.35435 * 10 9 7 12 12 H 1.09003 * 110.80460 * 263.80468 * 11 10 9 13 13 C 1.54159 * 105.00180 * 24.01647 * 11 10 9 14 14 H 1.09000 * 110.99027 * 239.79138 * 13 11 10 15 15 C 1.48151 * 127.83535 * 195.54695 * 9 7 2 16 16 C 1.53262 * 109.36468 * 116.42421 * 13 11 10 17 17 H 1.09010 * 110.51441 * 182.53382 * 16 13 11 18 18 C 1.53333 * 108.66565 * 60.54220 * 16 13 11 19 19 C 1.54215 * 109.79524 * 299.66540 * 18 16 13 20 20 C 1.52976 * 109.08418 * 141.63824 * 11 10 9 21 21 H 1.09000 * 109.64491 * 65.51837 * 20 11 10 22 22 C 1.53607 * 109.11420 * 305.42099 * 20 11 10 23 23 N 1.47581 * 106.72011 * 300.24382 * 22 20 11 24 24 C 1.34777 * 122.01744 * 180.02562 * 23 22 20 25 25 O 1.21281 * 119.99576 * 180.02562 * 24 23 22 26 26 C 1.50698 * 120.00227 * 0.02693 * 24 23 22 27 27 C 1.53006 * 109.46904 * 179.97438 * 26 24 23 28 28 N 1.46503 * 109.46798 * 180.02562 * 27 26 24 29 29 C 1.34433 * 126.82071 * 124.71538 * 28 27 26 30 30 N 1.30832 * 108.07582 * 179.88923 * 29 28 27 31 31 C 1.33239 * 109.82638 * 0.38019 * 30 29 28 32 32 N 1.30710 * 108.94777 * 359.76346 * 31 30 29 33 33 H 0.97002 * 120.00315 * 359.97438 * 1 2 3 34 34 H 1.08999 * 110.41889 * 21.57944 * 10 9 7 35 35 H 1.09001 * 110.41860 * 259.12712 * 10 9 7 36 36 H 1.08996 * 110.40287 * 338.31475 * 15 9 7 37 37 H 1.08999 * 110.40123 * 100.74016 * 15 9 7 38 38 H 1.09002 * 109.45032 * 59.39187 * 18 16 13 39 39 H 1.09006 * 109.44390 * 179.29727 * 18 16 13 40 40 H 1.09007 * 109.72528 * 240.16211 * 19 18 16 41 41 H 1.08996 * 109.73779 * 120.07027 * 19 18 16 42 42 H 1.08994 * 110.00217 * 58.91254 * 22 20 11 43 43 H 1.09006 * 109.99969 * 180.30925 * 22 20 11 44 44 H 1.09000 * 109.47373 * 299.99642 * 26 24 23 45 45 H 1.09000 * 109.46980 * 59.99950 * 26 24 23 46 46 H 1.09000 * 109.47147 * 300.00188 * 27 26 24 47 47 H 1.09000 * 109.47010 * 60.00376 * 27 26 24 48 48 H 1.08002 * 125.95979 * 0.03556 * 29 28 27 49 49 H 1.08004 * 125.52568 * 179.79200 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0800 -1.2080 0.1474 9 7 1.3385 -2.3805 -0.1886 10 6 -0.0342 -2.5704 -0.7127 11 6 0.0655 -3.8152 -1.6206 12 1 0.2030 -3.5248 -2.6621 13 6 1.2847 -4.5973 -1.0930 14 1 2.0420 -4.7096 -1.8688 15 6 1.8198 -3.7546 0.0851 16 6 0.8234 -5.9578 -0.5588 17 1 1.6653 -6.5090 -0.1397 18 6 0.1715 -6.7397 -1.7054 19 6 -1.0454 -5.9602 -2.2436 20 6 -1.2010 -4.6573 -1.4556 21 1 -2.0612 -4.1027 -1.8305 22 6 -1.4019 -4.9772 0.0333 23 7 -0.2054 -5.7210 0.4729 24 6 -0.0607 -6.1571 1.7400 25 8 0.9384 -6.7648 2.0617 26 6 -1.1403 -5.8897 2.7569 27 6 -0.7303 -6.4866 4.1048 28 7 -1.7801 -6.2272 5.0932 29 6 -2.4213 -7.1383 5.8455 30 7 -3.2824 -6.5070 6.6015 31 6 -3.2261 -5.1987 6.3553 32 7 -2.3207 -4.9780 5.4387 33 1 -0.4851 0.8400 0.0004 34 1 -0.3436 -1.7008 -1.2925 35 1 -0.7319 -2.7511 0.1050 36 1 2.9093 -3.7786 0.1055 37 1 1.4130 -4.1189 1.0285 38 1 0.8940 -6.8731 -2.5106 39 1 -0.1504 -7.7157 -1.3420 40 1 -1.9473 -6.5617 -2.1296 41 1 -0.8976 -5.7295 -3.2985 42 1 -1.4857 -4.0531 0.6052 43 1 -2.2987 -5.5823 0.1669 44 1 -1.2810 -4.8141 2.8632 45 1 -2.0726 -6.3472 2.4258 46 1 -0.5899 -7.5622 3.9982 47 1 0.2021 -6.0294 4.4360 48 1 -2.2530 -8.2050 5.8303 49 1 -3.8302 -4.4431 6.8356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089774826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:09 Heat of formation + Delta-G solvation = 74.910386 kcal Electronic energy + Delta-G solvation = -31809.223770 eV Core-core repulsion = 27773.229578 eV Total energy + Delta-G solvation = -4035.994192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.00289 -42.38387 -39.90444 -37.24180 -35.85345 -34.43411 -33.90172 -33.20026 -32.19011 -31.34904 -30.79490 -28.18160 -27.10663 -26.53227 -25.52522 -23.43248 -22.90219 -22.50532 -22.26110 -21.84533 -20.80204 -19.05413 -18.73370 -17.84717 -17.62858 -17.39465 -17.03579 -16.78190 -16.59263 -16.17721 -15.74758 -15.56373 -15.26554 -15.06055 -14.94609 -14.85255 -14.29658 -14.19280 -14.00520 -13.67978 -13.46966 -13.39636 -13.10176 -13.00482 -12.90442 -12.79033 -12.66791 -12.55047 -12.28839 -12.20868 -11.89666 -11.81729 -11.80068 -11.28548 -11.07976 -11.03136 -10.95160 -10.84787 -10.77872 -10.65829 -10.57272 -9.49095 -8.86578 -7.92715 -5.27512 0.70231 1.30201 1.42324 1.43431 1.52179 1.56372 2.00093 2.04653 2.45393 3.25610 3.37698 3.49308 3.53043 3.55301 3.69661 3.75897 3.81246 3.85569 4.07442 4.12001 4.14565 4.19798 4.27550 4.30240 4.34008 4.45082 4.49363 4.58628 4.63509 4.66721 4.74555 4.78413 4.81387 4.91973 5.03223 5.09717 5.18047 5.19865 5.26523 5.29605 5.37982 5.41221 5.47343 5.47903 5.60211 5.65526 5.76487 5.90297 6.19372 6.46640 7.02501 7.09760 7.12061 7.68570 8.48064 9.19821 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.003805 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.569478 B = 7357.791332 C = 9391.840953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.056 4.056 3 Si 0.974 3.026 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.620 5.620 10 C 0.166 3.834 11 C -0.092 4.092 12 H 0.072 0.928 13 C -0.097 4.097 14 H 0.089 0.911 15 C 0.133 3.867 16 C 0.153 3.847 17 H 0.090 0.910 18 C -0.116 4.116 19 C -0.101 4.101 20 C -0.085 4.085 21 H 0.095 0.905 22 C 0.112 3.888 23 N -0.595 5.595 24 C 0.524 3.476 25 O -0.579 6.579 26 C -0.138 4.138 27 C 0.152 3.848 28 N -0.384 5.384 29 C 0.265 3.735 30 N -0.576 5.576 31 C 0.193 3.807 32 N -0.360 5.360 33 H 0.249 0.751 34 H 0.043 0.957 35 H 0.012 0.988 36 H 0.030 0.970 37 H 0.010 0.990 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.120 0.880 46 H 0.142 0.858 47 H 0.078 0.922 48 H 0.264 0.736 49 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.415 -19.437 0.202 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.250 4.250 3 Si 0.802 3.198 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.344 5.344 10 C 0.041 3.959 11 C -0.112 4.112 12 H 0.090 0.910 13 C -0.118 4.118 14 H 0.107 0.893 15 C 0.007 3.993 16 C 0.050 3.950 17 H 0.108 0.892 18 C -0.154 4.154 19 C -0.139 4.139 20 C -0.104 4.104 21 H 0.113 0.887 22 C -0.010 4.010 23 N -0.326 5.326 24 C 0.313 3.687 25 O -0.460 6.460 26 C -0.179 4.179 27 C 0.030 3.970 28 N -0.174 5.174 29 C -0.031 4.031 30 N -0.304 5.304 31 C -0.110 4.110 32 N -0.188 5.188 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.049 0.951 37 H 0.028 0.972 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.138 0.862 46 H 0.160 0.840 47 H 0.096 0.904 48 H 0.280 0.720 49 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -6.873 -18.949 0.316 20.160 hybrid contribution 0.726 1.673 0.278 1.845 sum -6.148 -17.276 0.594 18.347 Atomic orbital electron populations 1.70067 1.06211 1.25534 1.57077 1.25611 0.96481 1.00793 1.02130 0.85158 0.77675 0.79339 0.77639 1.20915 1.21902 1.19855 1.19305 0.91006 0.84081 1.42834 0.91262 1.45215 1.14545 1.00577 1.74073 1.21612 0.85663 0.94753 0.93907 1.22131 0.94565 0.95322 0.99185 0.90962 1.22451 0.97719 0.94271 0.97329 0.89265 1.21767 0.96205 0.85647 0.95658 1.21328 0.90760 0.94733 0.88194 0.89224 1.22064 0.98346 0.98327 0.96702 1.21703 0.98459 0.94228 0.99491 1.21377 0.97766 0.97253 0.93997 0.88726 1.22197 0.87389 0.95584 0.95840 1.48472 1.20675 1.54463 1.09031 1.20411 0.87488 0.78126 0.82683 1.90666 1.32119 1.43793 1.79457 1.21738 0.99093 1.03804 0.93240 1.21555 0.87046 1.04131 0.84237 1.50645 1.30585 1.04497 1.31715 1.26995 0.88562 0.99744 0.87784 1.70579 1.25478 1.05919 1.28382 1.26539 0.96049 0.94098 0.94267 1.78110 1.16083 1.04154 1.20425 0.94183 0.93825 0.97018 0.95127 0.97245 0.89541 0.90589 0.89757 0.90418 0.92813 0.88193 0.89730 0.86173 0.84032 0.90401 0.72046 0.74681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.38 10.86 21.65 0.24 -56.15 16 2 C -0.06 -3.22 5.40 84.86 0.46 -2.76 16 3 Si 0.97 46.40 29.56 68.60 2.03 48.43 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.24 -14.06 10.35 84.03 0.87 -13.19 16 8 H 0.07 3.94 7.84 -2.91 -0.02 3.91 16 9 N -0.62 -32.43 3.38 -688.07 -2.33 -34.76 16 10 C 0.17 7.73 5.20 86.53 0.45 8.18 16 11 C -0.09 -3.08 3.11 -9.94 -0.03 -3.11 16 12 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 13 C -0.10 -3.20 3.17 -9.83 -0.03 -3.23 16 14 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 15 C 0.13 5.81 6.61 86.54 0.57 6.38 16 16 C 0.15 4.08 2.94 44.98 0.13 4.22 16 17 H 0.09 2.62 7.19 -2.38 -0.02 2.60 16 18 C -0.12 -2.17 5.87 31.12 0.18 -1.98 16 19 C -0.10 -1.75 5.77 31.03 0.18 -1.57 16 20 C -0.09 -2.06 2.84 -10.58 -0.03 -2.09 16 21 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 22 C 0.11 2.79 4.96 86.38 0.43 3.22 16 23 N -0.59 -16.10 1.91 -790.14 -1.51 -17.61 16 24 C 0.52 14.69 6.97 87.66 0.61 15.30 16 25 O -0.58 -19.06 15.56 -3.03 -0.05 -19.10 16 26 C -0.14 -3.16 4.85 29.85 0.14 -3.02 16 27 C 0.15 3.07 5.84 86.38 0.50 3.57 16 28 N -0.38 -8.32 3.69 -352.04 -1.30 -9.62 16 29 C 0.26 4.50 12.63 180.36 2.28 6.77 16 30 N -0.58 -12.81 11.19 -204.00 -2.28 -15.09 16 31 C 0.19 4.49 13.03 180.77 2.36 6.85 16 32 N -0.36 -9.93 12.57 -61.25 -0.77 -10.70 16 33 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 34 H 0.04 2.35 6.51 -2.39 -0.02 2.33 16 35 H 0.01 0.59 5.28 -2.39 -0.01 0.58 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.01 0.45 6.29 -2.39 -0.02 0.44 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.05 1.73 5.72 -2.39 -0.01 1.72 16 43 H 0.10 1.80 8.13 -2.38 -0.02 1.78 16 44 H 0.08 2.44 8.11 -2.39 -0.02 2.42 16 45 H 0.12 2.11 8.13 -2.39 -0.02 2.09 16 46 H 0.14 1.91 8.04 -2.39 -0.02 1.89 16 47 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 48 H 0.26 1.50 8.06 -2.91 -0.02 1.48 16 49 H 0.24 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -78.34 378.49 4.05 -74.29 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.95 Total: 16.78 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 9.07 Total: 23.54 kcal Atomic # 7 Polarization: -135.97 SS G_CDS: -7.96 Total: -143.93 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -78.34 4.05 -74.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089774826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.201 kcal (2) G-P(sol) polarization free energy of solvation -78.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds