Wall clock time and date at job start Sat Apr 11 2020 07:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00288 * 2 1 4 4 H 1.48498 * 109.47499 * 240.00240 * 3 2 1 5 5 H 1.48508 * 109.47007 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47354 * 120.00231 * 3 2 1 7 7 C 1.38811 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00656 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99733 * 359.97438 * 7 2 1 10 10 C 1.49845 * 125.87050 * 179.97438 * 9 7 2 11 11 C 1.49347 * 101.88731 * 203.37322 * 10 9 7 12 12 H 1.08997 * 105.20922 * 63.79893 * 11 10 9 13 13 C 1.56576 * 101.27334 * 315.76576 * 11 10 9 14 14 H 1.08997 * 111.61853 * 290.68987 * 13 11 10 15 15 C 1.49032 * 125.86930 * 0.03619 * 9 7 2 16 16 C 1.52514 * 102.60943 * 171.49082 * 13 11 10 17 17 H 1.08999 * 113.69607 * 209.62318 * 16 13 11 18 18 C 1.56093 * 102.51718 * 85.22720 * 16 13 11 19 19 C 1.53899 * 106.97873 * 322.09348 * 18 16 13 20 20 C 1.49177 * 130.23959 * 191.12909 * 11 10 9 21 21 H 1.09001 * 113.26915 * 330.93695 * 20 11 10 22 22 C 1.56716 * 102.43992 * 208.26294 * 20 11 10 23 23 N 1.49069 * 107.93955 * 337.02739 * 16 13 11 24 24 C 1.34777 * 122.60620 * 254.15653 * 23 16 13 25 25 O 1.21283 * 119.99750 * 359.70794 * 24 23 16 26 26 C 1.50702 * 119.99928 * 179.97438 * 24 23 16 27 27 C 1.52996 * 109.47159 * 179.72352 * 26 24 23 28 28 C 1.50697 * 109.47491 * 179.97438 * 27 26 24 29 29 N 1.33241 * 125.52734 * 89.99307 * 28 27 26 30 30 C 1.30834 * 109.82523 * 180.02562 * 29 28 27 31 31 N 1.34422 * 108.08168 * 359.97438 * 30 29 28 32 32 H 0.97004 * 126.82668 * 179.97438 * 31 30 29 33 33 N 1.30714 * 125.52619 * 269.69632 * 28 27 26 34 34 H 0.97008 * 119.99878 * 359.97438 * 1 2 3 35 35 H 1.09003 * 110.94735 * 85.22711 * 10 9 7 36 36 H 1.09004 * 110.95141 * 321.52223 * 10 9 7 37 37 H 1.08998 * 110.31745 * 68.72199 * 15 9 7 38 38 H 1.09004 * 110.39315 * 306.58496 * 15 9 7 39 39 H 1.08996 * 109.95017 * 81.45794 * 18 16 13 40 40 H 1.09003 * 109.94533 * 202.63176 * 18 16 13 41 41 H 1.08997 * 109.76089 * 205.76634 * 19 18 16 42 42 H 1.09005 * 109.35505 * 85.46470 * 19 18 16 43 43 H 1.08998 * 110.70359 * 205.72857 * 22 20 11 44 44 H 1.08997 * 110.73910 * 82.66515 * 22 20 11 45 45 H 1.09004 * 109.46965 * 299.72211 * 26 24 23 46 46 H 1.08994 * 109.46990 * 59.72065 * 26 24 23 47 47 H 1.09004 * 109.47066 * 299.99797 * 27 26 24 48 48 H 1.09000 * 109.47234 * 59.99288 * 27 26 24 49 49 H 1.08000 * 125.95785 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.9380 -3.7556 -0.0016 11 6 0.8390 -4.5845 -0.5809 12 1 0.7037 -4.2109 -1.5959 13 6 -0.4033 -4.0310 0.1948 14 1 -0.3767 -4.3111 1.2479 15 6 -0.1570 -2.5405 -0.0008 16 6 -1.5701 -4.6991 -0.5251 17 1 -2.4875 -4.1107 -0.5122 18 6 -1.6695 -6.0782 0.1991 19 6 -0.2298 -6.5387 0.4885 20 6 0.6903 -6.0666 -0.6625 21 1 1.6435 -6.5929 -0.7124 22 6 -0.1920 -6.2473 -1.9450 23 7 -1.1117 -5.0737 -1.8932 24 6 -1.4937 -4.4010 -2.9968 25 8 -2.2438 -3.4529 -2.8997 26 6 -0.9937 -4.8306 -4.3519 27 6 -1.5785 -3.9115 -5.4262 28 6 -1.0781 -4.3407 -6.7813 29 7 -1.6722 -5.2248 -7.5818 30 6 -0.9757 -5.3672 -8.6801 31 7 0.0971 -4.5611 -8.6013 32 1 0.7938 -4.4536 -9.2677 33 7 0.0064 -3.9019 -7.3645 34 1 -0.4850 0.8401 0.0004 35 1 2.1754 -4.0771 1.0125 36 1 2.8242 -3.7853 -0.6357 37 1 -0.5713 -2.2102 -0.9533 38 1 -0.5972 -1.9734 0.8195 39 1 -2.2198 -5.9688 1.1336 40 1 -2.1704 -6.8011 -0.4448 41 1 -0.1977 -7.6259 0.5587 42 1 0.1075 -6.1010 1.4281 43 1 -0.7543 -7.1798 -1.8977 44 1 0.4231 -6.2153 -2.8443 45 1 0.0943 -4.7690 -4.3741 46 1 -1.3035 -5.8577 -4.5446 47 1 -2.6666 -3.9731 -5.4041 48 1 -1.2688 -2.8844 -5.2335 49 1 -1.2201 -6.0188 -9.5060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089792038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:19 Heat of formation + Delta-G solvation = 125.809794 kcal Electronic energy + Delta-G solvation = -31733.987455 eV Core-core repulsion = 27700.200427 eV Total energy + Delta-G solvation = -4033.787028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.28546 -41.50899 -38.46674 -35.81572 -34.28245 -32.78274 -32.15129 -31.90691 -31.41586 -30.49731 -28.84560 -26.75420 -26.03047 -24.65660 -24.35830 -22.92203 -21.82125 -20.84752 -20.36108 -19.86949 -19.37671 -18.53991 -17.25043 -16.95297 -16.62176 -15.96796 -15.85031 -15.52804 -15.34607 -14.88044 -14.34426 -14.22011 -13.99231 -13.40409 -13.25251 -13.01441 -12.76741 -12.67650 -12.40365 -12.30356 -12.20561 -12.05804 -11.82419 -11.47936 -11.38033 -11.12452 -11.07960 -10.79952 -10.76275 -10.61545 -10.44828 -10.29859 -10.21993 -10.07876 -9.96171 -9.89322 -9.62127 -9.51248 -9.26795 -9.09981 -8.51894 -8.16910 -6.71356 -5.55593 -2.90034 1.40737 2.45532 2.66726 3.01436 3.18705 3.48680 3.52293 3.54476 3.92628 4.45010 4.56706 4.59415 4.69251 4.80775 4.87116 4.97296 5.12519 5.14778 5.20870 5.22415 5.36816 5.41826 5.53327 5.56857 5.61430 5.64260 5.72622 5.91719 5.92809 5.97793 6.02554 6.04716 6.08468 6.09491 6.25341 6.30556 6.32061 6.44360 6.49858 6.55046 6.73544 6.74819 6.79477 6.89606 7.19496 7.65812 7.75925 7.81839 7.88954 7.97827 8.34375 8.54796 9.31312 9.92363 10.61186 11.55017 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008703 B = 0.003878 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.410516 B = 7218.521725 C = 9324.167893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.228 4.228 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.154 3.846 11 C -0.125 4.125 12 H 0.070 0.930 13 C -0.137 4.137 14 H 0.080 0.920 15 C 0.191 3.809 16 C 0.162 3.838 17 H 0.110 0.890 18 C -0.130 4.130 19 C -0.114 4.114 20 C -0.077 4.077 21 H 0.093 0.907 22 C 0.109 3.891 23 N -0.612 5.612 24 C 0.520 3.480 25 O -0.530 6.530 26 C -0.128 4.128 27 C -0.013 4.013 28 C 0.235 3.765 29 N -0.541 5.541 30 C 0.257 3.743 31 N -0.488 5.488 32 H 0.441 0.559 33 N -0.308 5.308 34 H 0.252 0.748 35 H 0.018 0.982 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 -19.383 -12.083 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.356 4.356 8 H 0.093 0.907 9 N -0.338 5.338 10 C 0.029 3.971 11 C -0.145 4.145 12 H 0.089 0.911 13 C -0.157 4.157 14 H 0.099 0.901 15 C 0.067 3.933 16 C 0.059 3.941 17 H 0.128 0.872 18 C -0.168 4.168 19 C -0.152 4.152 20 C -0.096 4.096 21 H 0.111 0.889 22 C -0.013 4.013 23 N -0.347 5.347 24 C 0.308 3.692 25 O -0.406 6.406 26 C -0.169 4.169 27 C -0.053 4.053 28 C -0.048 4.048 29 N -0.269 5.269 30 C -0.043 4.043 31 N -0.206 5.206 32 H 0.286 0.714 33 N -0.136 5.136 34 H 0.062 0.938 35 H 0.036 0.964 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.309 -18.223 -11.659 21.756 hybrid contribution 1.076 0.776 -0.878 1.591 sum -1.234 -17.446 -12.536 21.519 Atomic orbital electron populations 1.69952 1.04725 1.24934 1.56825 1.24770 0.95663 0.97408 1.02573 0.86253 0.78442 0.83636 0.77724 1.21344 1.21636 1.21328 1.18983 0.90248 0.82532 1.43876 0.90749 1.45586 1.01228 0.99231 1.87733 1.20492 0.93665 0.86294 0.96645 1.21310 0.97769 0.92881 1.02500 0.91132 1.23210 0.94225 0.99937 0.98325 0.90140 1.20907 0.83858 0.87628 1.00903 1.22095 0.97936 0.94796 0.79231 0.87186 1.22765 0.96911 0.96641 1.00531 1.22118 0.94444 0.99655 0.98960 1.21571 0.97569 0.96260 0.94238 0.88857 1.23089 0.91252 0.88168 0.98826 1.49444 1.47847 1.30903 1.06476 1.20278 0.80990 0.82520 0.85436 1.90749 1.36131 1.27222 1.86526 1.21543 1.02455 1.00933 0.91978 1.19691 1.01812 1.00360 0.83434 1.24376 0.89865 0.92746 0.97817 1.70451 1.31804 1.21394 1.03272 1.26106 0.85229 0.94661 0.98272 1.48180 1.22522 1.33189 1.16690 0.71389 1.78150 1.21704 1.20022 0.93774 0.93795 0.96434 0.94469 0.94425 0.92503 0.90856 0.91599 0.92160 0.91185 0.90952 0.90428 0.88914 0.88906 0.88202 0.88298 0.76237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.45 10.38 55.49 0.58 -27.87 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.23 -6.66 10.32 -15.06 -0.16 -6.81 16 8 H 0.07 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -16.25 3.50 -170.86 -0.60 -16.85 16 10 C 0.15 3.25 7.17 -3.98 -0.03 3.23 16 11 C -0.12 -2.18 2.28 -92.37 -0.21 -2.39 16 12 H 0.07 1.42 5.66 -51.93 -0.29 1.13 16 13 C -0.14 -2.59 2.54 -89.28 -0.23 -2.82 16 14 H 0.08 1.47 6.40 -51.93 -0.33 1.14 16 15 C 0.19 4.87 4.96 -2.98 -0.01 4.86 16 16 C 0.16 2.61 4.09 -65.10 -0.27 2.35 16 17 H 0.11 1.97 7.72 -51.93 -0.40 1.57 16 18 C -0.13 -1.55 5.46 -24.61 -0.13 -1.69 16 19 C -0.11 -1.28 5.32 -25.35 -0.13 -1.42 16 20 C -0.08 -0.95 4.33 -89.58 -0.39 -1.34 16 21 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 22 C 0.11 1.24 5.52 -0.54 0.00 1.24 16 23 N -0.61 -9.24 1.74 -158.09 -0.28 -9.52 16 24 C 0.52 8.79 7.48 -10.98 -0.08 8.71 16 25 O -0.53 -11.24 15.89 5.55 0.09 -11.15 16 26 C -0.13 -1.71 4.33 -27.88 -0.12 -1.83 16 27 C -0.01 -0.18 5.13 -27.89 -0.14 -0.32 16 28 C 0.23 3.17 7.39 -156.85 -1.16 2.01 16 29 N -0.54 -6.47 11.19 -11.98 -0.13 -6.60 16 30 C 0.26 1.97 13.13 -90.66 -1.19 0.78 16 31 N -0.49 -4.10 7.45 29.53 0.22 -3.88 16 32 H 0.44 1.98 8.96 -182.33 -1.63 0.34 16 33 N -0.31 -4.12 12.80 32.42 0.41 -3.71 16 34 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 1.11 7.88 -51.93 -0.41 0.70 16 38 H 0.06 1.63 7.05 -51.93 -0.37 1.26 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.71 7.26 -51.93 -0.38 0.33 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.86 6.88 -51.93 -0.36 0.50 16 43 H 0.07 0.67 7.13 -51.93 -0.37 0.30 16 44 H 0.08 0.80 6.74 -51.93 -0.35 0.45 16 45 H 0.09 1.23 7.64 -51.93 -0.40 0.83 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.10 1.41 8.10 -51.93 -0.42 0.99 16 48 H 0.10 1.59 8.10 -51.93 -0.42 1.17 16 49 H 0.22 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -38.36 377.30 -12.03 -50.39 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.63 Total: 1.12 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -4.35 Total: 4.23 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: 0.20 Total: -68.42 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.36 -12.03 -50.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089792038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.200 kcal (2) G-P(sol) polarization free energy of solvation -38.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds