Wall clock time and date at job start Sat Apr 11 2020 07:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99670 * 2 1 4 4 H 1.48491 * 109.47275 * 269.99791 * 3 2 1 5 5 H 1.48502 * 109.46855 * 30.00169 * 3 2 1 6 6 H 1.48504 * 109.47246 * 149.99618 * 3 2 1 7 7 C 1.38810 * 120.00444 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00141 * 170.63797 * 7 2 1 9 9 N 1.36938 * 120.00082 * 350.64074 * 7 2 1 10 10 C 1.48151 * 127.83339 * 344.05501 * 9 7 2 11 11 C 1.54656 * 104.51676 * 219.38782 * 10 9 7 12 12 H 1.09002 * 111.58121 * 216.01276 * 11 10 9 13 13 C 1.53730 * 105.08986 * 336.39646 * 11 10 9 14 14 H 1.08998 * 111.18314 * 239.80998 * 13 11 10 15 15 C 1.48151 * 127.83932 * 164.07535 * 9 7 2 16 16 C 1.53010 * 109.87164 * 116.81245 * 13 11 10 17 17 H 1.08998 * 110.17211 * 179.74807 * 16 13 11 18 18 C 1.53026 * 109.28100 * 300.28039 * 16 13 11 19 19 C 1.52918 * 109.90193 * 58.49437 * 18 16 13 20 20 C 1.53261 * 109.65388 * 1.87880 * 19 18 16 21 21 H 1.08991 * 110.52653 * 176.63971 * 20 19 18 22 22 N 1.47626 * 108.18376 * 55.49134 * 20 19 18 23 23 C 1.34781 * 122.00920 * 121.22838 * 22 20 19 24 24 O 1.21276 * 119.99890 * 359.97438 * 23 22 20 25 25 C 1.50694 * 119.99676 * 180.02562 * 23 22 20 26 26 C 1.52999 * 109.46942 * 179.97438 * 25 23 22 27 27 N 1.46499 * 109.47278 * 180.02562 * 26 25 23 28 28 C 1.35310 * 125.87491 * 124.71533 * 27 26 25 29 29 C 1.35351 * 106.17872 * 179.90366 * 28 27 26 30 30 N 1.33767 * 106.49397 * 0.34857 * 29 28 27 31 31 N 1.28629 * 108.89061 * 359.77727 * 30 29 28 32 32 C 1.47584 * 115.97603 * 301.25140 * 22 20 19 33 33 H 0.96997 * 120.00633 * 359.97438 * 1 2 3 34 34 H 1.08994 * 110.41332 * 338.31587 * 10 9 7 35 35 H 1.09000 * 110.41088 * 100.63779 * 10 9 7 36 36 H 1.09000 * 110.40913 * 21.61369 * 15 9 7 37 37 H 1.09000 * 110.41293 * 259.17404 * 15 9 7 38 38 H 1.08999 * 109.38572 * 298.38817 * 18 16 13 39 39 H 1.09004 * 109.38321 * 178.59747 * 18 16 13 40 40 H 1.09005 * 109.43977 * 121.93239 * 19 18 16 41 41 H 1.08999 * 109.43838 * 241.85765 * 19 18 16 42 42 H 1.08993 * 109.47356 * 300.00005 * 25 23 22 43 43 H 1.09008 * 109.47293 * 60.00248 * 25 23 22 44 44 H 1.09005 * 109.47055 * 299.99785 * 26 25 23 45 45 H 1.08999 * 109.47685 * 59.99981 * 26 25 23 46 46 H 1.08001 * 126.90858 * 0.02562 * 28 27 26 47 47 H 1.07995 * 126.75197 * 180.12425 * 29 28 27 48 48 H 1.09001 * 110.00169 * 119.87286 * 32 22 20 49 49 H 1.09001 * 110.00124 * 241.27534 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0795 -1.2083 -0.1516 9 7 1.3394 -2.3801 0.1939 10 6 -0.0285 -2.5693 0.7306 11 6 0.0787 -3.8210 1.6326 12 1 -0.8249 -4.4288 1.5839 13 6 1.2937 -4.5965 1.0982 14 1 1.0091 -5.5954 0.7676 15 6 1.8168 -3.7544 -0.0857 16 6 2.3786 -4.6696 2.1747 17 1 3.2410 -5.2225 1.8023 18 6 2.8042 -3.2512 2.5602 19 6 1.5951 -2.4649 3.0684 20 6 0.3569 -3.3681 3.0707 21 1 -0.5009 -2.8395 3.4863 22 7 0.6638 -4.5686 3.8732 23 6 -0.0602 -4.9067 4.9585 24 8 -0.9959 -4.2161 5.3025 25 6 0.2937 -6.1424 5.7452 26 6 -0.6764 -6.2952 6.9184 27 7 -0.3321 -7.4961 7.6836 28 6 -0.0666 -7.5424 9.0095 29 6 0.1979 -8.8385 9.2962 30 7 0.0904 -9.5116 8.1452 31 7 -0.2247 -8.6878 7.2089 32 6 1.8115 -5.3758 3.4156 33 1 -0.4851 0.8400 0.0004 34 1 -0.3309 -1.7006 1.3153 35 1 -0.7344 -2.7446 -0.0811 36 1 2.9061 -3.7792 -0.1179 37 1 1.3996 -4.1181 -1.0247 38 1 3.2216 -2.7489 1.6876 39 1 3.5593 -3.3007 3.3448 40 1 1.7902 -2.1142 4.0818 41 1 1.4184 -1.6096 2.4162 42 1 0.2234 -7.0171 5.0988 43 1 1.3114 -6.0521 6.1252 44 1 -0.6057 -5.4203 7.5647 45 1 -1.6943 -6.3853 6.5389 46 1 -0.0677 -6.7124 9.7006 47 1 0.4501 -9.2480 10.2631 48 1 2.5689 -5.4240 4.1980 49 1 1.4798 -6.3806 3.1539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089801359.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:26 Heat of formation + Delta-G solvation = 102.487696 kcal Electronic energy + Delta-G solvation = -31619.238830 eV Core-core repulsion = 27584.440480 eV Total energy + Delta-G solvation = -4034.798350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.48817 -41.12044 -38.98531 -35.68832 -35.41739 -32.92712 -31.98968 -31.86807 -31.29836 -30.77504 -29.49524 -27.04823 -26.09457 -24.93148 -23.87714 -22.93975 -22.25589 -21.55141 -20.98470 -20.28437 -19.50662 -18.18439 -17.15047 -16.88634 -16.61360 -16.43480 -16.08208 -15.98630 -15.22929 -15.07021 -14.72005 -14.63723 -14.13095 -13.72630 -13.53889 -13.33392 -12.95448 -12.86233 -12.65014 -12.42400 -12.17461 -12.08780 -11.83728 -11.71434 -11.67398 -11.38714 -11.15781 -11.12386 -10.88875 -10.84855 -10.60924 -10.43877 -10.30479 -10.13351 -10.01861 -9.82232 -9.66430 -9.61380 -9.54705 -9.34830 -8.70118 -8.32417 -6.86307 -5.84606 -3.18510 1.32873 1.99751 2.33185 2.58824 3.06645 3.33222 3.39693 3.41139 4.05864 4.24403 4.31385 4.41387 4.46112 4.74088 4.85960 4.88789 4.93896 4.95560 5.09205 5.13883 5.30102 5.32625 5.37961 5.41430 5.45521 5.52394 5.61605 5.81461 5.82415 5.86931 5.88476 5.95091 6.03854 6.05310 6.23207 6.26983 6.32204 6.45898 6.50185 6.60660 6.71236 6.77600 6.91317 6.93081 7.23421 7.26872 7.48498 7.60494 7.66734 8.14909 8.15955 8.25277 9.05923 9.68817 10.47349 11.28843 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.023929 B = 0.002553 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.829937 B =10966.678320 C =11294.510417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.003 4.003 3 Si 0.905 3.095 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.222 4.222 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.165 3.835 11 C -0.117 4.117 12 H 0.065 0.935 13 C -0.093 4.093 14 H 0.065 0.935 15 C 0.130 3.870 16 C -0.086 4.086 17 H 0.078 0.922 18 C -0.102 4.102 19 C -0.124 4.124 20 C 0.157 3.843 21 H 0.096 0.904 22 N -0.599 5.599 23 C 0.521 3.479 24 O -0.550 6.550 25 C -0.152 4.152 26 C 0.131 3.869 27 N -0.289 5.289 28 C -0.048 4.048 29 C -0.055 4.055 30 N -0.274 5.274 31 N -0.085 5.085 32 C 0.114 3.886 33 H 0.254 0.746 34 H 0.089 0.911 35 H 0.021 0.979 36 H 0.048 0.952 37 H 0.020 0.980 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.110 0.890 46 H 0.191 0.809 47 H 0.189 0.811 48 H 0.064 0.936 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.651 -12.724 14.337 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.201 4.201 3 Si 0.735 3.265 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.039 3.961 11 C -0.138 4.138 12 H 0.083 0.917 13 C -0.113 4.113 14 H 0.084 0.916 15 C 0.004 3.996 16 C -0.104 4.104 17 H 0.096 0.904 18 C -0.140 4.140 19 C -0.162 4.162 20 C 0.056 3.944 21 H 0.114 0.886 22 N -0.332 5.332 23 C 0.308 3.692 24 O -0.430 6.430 25 C -0.193 4.193 26 C 0.010 3.990 27 N -0.083 5.083 28 C -0.199 4.199 29 C -0.213 4.213 30 N -0.140 5.140 31 N -0.065 5.065 32 C -0.009 4.009 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.117 0.883 44 H 0.134 0.866 45 H 0.128 0.872 46 H 0.208 0.792 47 H 0.206 0.794 48 H 0.082 0.918 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.030 -12.939 13.221 18.610 hybrid contribution 0.540 1.525 0.937 1.869 sum 2.570 -11.414 14.158 18.367 Atomic orbital electron populations 1.69887 1.04967 1.25434 1.55499 1.24862 0.95525 0.97783 1.01935 0.86246 0.78826 0.83783 0.77673 1.21565 1.21607 1.20590 1.18853 0.90609 0.82247 1.43339 0.90748 1.44924 1.13860 0.99790 1.72710 1.21567 0.87167 0.93575 0.93802 1.22670 0.96756 0.99631 0.94765 0.91681 1.22047 0.94811 0.98288 0.96201 0.91631 1.21702 0.97196 0.87017 0.93711 1.21410 0.97978 0.97177 0.93855 0.90359 1.21419 0.97122 0.94144 1.01297 1.21929 0.93568 1.00241 1.00477 1.21507 0.98737 0.84241 0.89918 0.88572 1.48730 1.30472 1.27061 1.26899 1.19955 0.82540 0.85893 0.80819 1.90717 1.29517 1.53908 1.68809 1.21871 1.00889 0.99198 0.97304 1.21891 1.00923 0.82606 0.93571 1.47613 1.44103 1.09024 1.07555 1.23755 1.08328 1.01362 0.86474 1.23638 1.07325 0.90875 0.99444 1.75126 1.15599 1.25398 0.97892 1.78312 1.18605 0.87269 1.22285 1.22017 0.87676 0.94242 0.96977 0.93526 0.89272 0.96066 0.93392 0.96228 0.89407 0.94092 0.94071 0.86759 0.87216 0.88310 0.86642 0.87157 0.79232 0.79392 0.91772 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.12 10.90 55.49 0.60 -24.52 16 2 C 0.00 -0.09 5.39 -17.43 -0.09 -0.18 16 3 Si 0.90 20.80 29.56 -169.99 -5.03 15.78 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.22 -5.53 8.19 -15.06 -0.12 -5.65 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 N -0.59 -13.22 1.76 -168.67 -0.30 -13.52 16 10 C 0.17 3.63 4.63 -2.26 -0.01 3.62 16 11 C -0.12 -2.06 3.39 -89.20 -0.30 -2.37 16 12 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 13 C -0.09 -1.46 3.16 -89.49 -0.28 -1.74 16 14 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 15 C 0.13 2.42 5.99 -2.39 -0.01 2.41 16 16 C -0.09 -1.15 2.70 -90.27 -0.24 -1.39 16 17 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 18 C -0.10 -1.61 5.07 -26.76 -0.14 -1.75 16 19 C -0.12 -2.20 5.29 -26.64 -0.14 -2.35 16 20 C 0.16 2.67 2.94 -67.01 -0.20 2.48 16 21 H 0.10 1.83 7.19 -51.93 -0.37 1.45 16 22 N -0.60 -8.34 2.81 -163.67 -0.46 -8.80 16 23 C 0.52 6.93 7.75 -10.99 -0.09 6.84 16 24 O -0.55 -9.08 15.56 5.56 0.09 -8.99 16 25 C -0.15 -1.43 4.76 -27.89 -0.13 -1.56 16 26 C 0.13 1.12 5.75 -4.04 -0.02 1.10 16 27 N -0.29 -2.76 3.44 -61.26 -0.21 -2.97 16 28 C -0.05 -0.36 11.57 -17.05 -0.20 -0.56 16 29 C -0.06 -0.48 12.05 -17.74 -0.21 -0.69 16 30 N -0.27 -3.40 12.41 30.23 0.38 -3.03 16 31 N -0.08 -1.05 12.91 60.35 0.78 -0.27 16 32 C 0.11 1.31 5.29 -3.12 -0.02 1.30 16 33 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.09 2.20 5.66 -51.93 -0.29 1.91 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.85 7.26 -51.93 -0.38 0.47 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 1.60 5.42 -51.93 -0.28 1.32 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.11 2.48 5.00 -51.93 -0.26 2.22 16 42 H 0.11 1.02 8.12 -51.93 -0.42 0.60 16 43 H 0.10 0.82 8.09 -51.92 -0.42 0.40 16 44 H 0.12 0.82 8.02 -51.93 -0.42 0.40 16 45 H 0.11 1.00 8.10 -51.93 -0.42 0.58 16 46 H 0.19 0.68 8.06 -52.49 -0.42 0.25 16 47 H 0.19 0.96 8.06 -52.49 -0.42 0.54 16 48 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -30.83 372.96 -8.20 -39.03 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.46 Total: 2.16 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.21 Total: -0.49 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.79 Total: -53.11 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.83 -8.20 -39.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089801359.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.516 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds