Wall clock time and date at job start Sat Apr 11 2020 07:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99670 * 2 1 4 4 H 1.48491 * 109.47275 * 269.99791 * 3 2 1 5 5 H 1.48502 * 109.46855 * 30.00169 * 3 2 1 6 6 H 1.48504 * 109.47246 * 149.99618 * 3 2 1 7 7 C 1.38810 * 120.00444 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00141 * 170.63797 * 7 2 1 9 9 N 1.36938 * 120.00082 * 350.64074 * 7 2 1 10 10 C 1.48151 * 127.83339 * 344.05501 * 9 7 2 11 11 C 1.54656 * 104.51676 * 219.38782 * 10 9 7 12 12 H 1.09002 * 111.58121 * 216.01276 * 11 10 9 13 13 C 1.53730 * 105.08986 * 336.39646 * 11 10 9 14 14 H 1.08998 * 111.18314 * 239.80998 * 13 11 10 15 15 C 1.48151 * 127.83932 * 164.07535 * 9 7 2 16 16 C 1.53010 * 109.87164 * 116.81245 * 13 11 10 17 17 H 1.08998 * 110.17211 * 179.74807 * 16 13 11 18 18 C 1.53026 * 109.28100 * 300.28039 * 16 13 11 19 19 C 1.52918 * 109.90193 * 58.49437 * 18 16 13 20 20 C 1.53261 * 109.65388 * 1.87880 * 19 18 16 21 21 H 1.08991 * 110.52653 * 176.63971 * 20 19 18 22 22 N 1.47626 * 108.18376 * 55.49134 * 20 19 18 23 23 C 1.34781 * 122.00920 * 121.22838 * 22 20 19 24 24 O 1.21276 * 119.99890 * 359.97438 * 23 22 20 25 25 C 1.50694 * 119.99676 * 180.02562 * 23 22 20 26 26 C 1.52999 * 109.46942 * 179.97438 * 25 23 22 27 27 N 1.46499 * 109.47278 * 180.02562 * 26 25 23 28 28 C 1.35310 * 125.87491 * 124.71533 * 27 26 25 29 29 C 1.35351 * 106.17872 * 179.90366 * 28 27 26 30 30 N 1.33767 * 106.49397 * 0.34857 * 29 28 27 31 31 N 1.28629 * 108.89061 * 359.77727 * 30 29 28 32 32 C 1.47584 * 115.97603 * 301.25140 * 22 20 19 33 33 H 0.96997 * 120.00633 * 359.97438 * 1 2 3 34 34 H 1.08994 * 110.41332 * 338.31587 * 10 9 7 35 35 H 1.09000 * 110.41088 * 100.63779 * 10 9 7 36 36 H 1.09000 * 110.40913 * 21.61369 * 15 9 7 37 37 H 1.09000 * 110.41293 * 259.17404 * 15 9 7 38 38 H 1.08999 * 109.38572 * 298.38817 * 18 16 13 39 39 H 1.09004 * 109.38321 * 178.59747 * 18 16 13 40 40 H 1.09005 * 109.43977 * 121.93239 * 19 18 16 41 41 H 1.08999 * 109.43838 * 241.85765 * 19 18 16 42 42 H 1.08993 * 109.47356 * 300.00005 * 25 23 22 43 43 H 1.09008 * 109.47293 * 60.00248 * 25 23 22 44 44 H 1.09005 * 109.47055 * 299.99785 * 26 25 23 45 45 H 1.08999 * 109.47685 * 59.99981 * 26 25 23 46 46 H 1.08001 * 126.90858 * 0.02562 * 28 27 26 47 47 H 1.07995 * 126.75197 * 180.12425 * 29 28 27 48 48 H 1.09001 * 110.00169 * 119.87286 * 32 22 20 49 49 H 1.09001 * 110.00124 * 241.27534 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0795 -1.2083 -0.1516 9 7 1.3394 -2.3801 0.1939 10 6 -0.0285 -2.5693 0.7306 11 6 0.0787 -3.8210 1.6326 12 1 -0.8249 -4.4288 1.5839 13 6 1.2937 -4.5965 1.0982 14 1 1.0091 -5.5954 0.7676 15 6 1.8168 -3.7544 -0.0857 16 6 2.3786 -4.6696 2.1747 17 1 3.2410 -5.2225 1.8023 18 6 2.8042 -3.2512 2.5602 19 6 1.5951 -2.4649 3.0684 20 6 0.3569 -3.3681 3.0707 21 1 -0.5009 -2.8395 3.4863 22 7 0.6638 -4.5686 3.8732 23 6 -0.0602 -4.9067 4.9585 24 8 -0.9959 -4.2161 5.3025 25 6 0.2937 -6.1424 5.7452 26 6 -0.6764 -6.2952 6.9184 27 7 -0.3321 -7.4961 7.6836 28 6 -0.0666 -7.5424 9.0095 29 6 0.1979 -8.8385 9.2962 30 7 0.0904 -9.5116 8.1452 31 7 -0.2247 -8.6878 7.2089 32 6 1.8115 -5.3758 3.4156 33 1 -0.4851 0.8400 0.0004 34 1 -0.3309 -1.7006 1.3153 35 1 -0.7344 -2.7446 -0.0811 36 1 2.9061 -3.7792 -0.1179 37 1 1.3996 -4.1181 -1.0247 38 1 3.2216 -2.7489 1.6876 39 1 3.5593 -3.3007 3.3448 40 1 1.7902 -2.1142 4.0818 41 1 1.4184 -1.6096 2.4162 42 1 0.2234 -7.0171 5.0988 43 1 1.3114 -6.0521 6.1252 44 1 -0.6057 -5.4203 7.5647 45 1 -1.6943 -6.3853 6.5389 46 1 -0.0677 -6.7124 9.7006 47 1 0.4501 -9.2480 10.2631 48 1 2.5689 -5.4240 4.1980 49 1 1.4798 -6.3806 3.1539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089801359.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:25 Heat of formation + Delta-G solvation = 83.908557 kcal Electronic energy + Delta-G solvation = -31620.044482 eV Core-core repulsion = 27584.440480 eV Total energy + Delta-G solvation = -4035.604002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.16006 -42.38711 -40.15010 -37.09665 -36.21947 -34.48383 -33.36647 -33.16953 -31.96674 -31.67535 -31.14709 -28.43005 -27.33639 -26.36473 -25.06168 -23.65243 -23.48626 -22.47090 -22.23136 -21.87927 -20.61980 -19.10342 -18.69068 -17.97835 -17.63796 -17.53374 -17.24183 -17.01114 -16.66506 -16.05988 -15.85262 -15.72480 -15.29767 -14.92869 -14.73128 -14.59602 -14.23480 -14.00861 -13.79016 -13.56509 -13.48198 -13.34445 -13.15583 -12.93350 -12.79267 -12.66001 -12.56154 -12.50653 -12.39027 -12.11610 -11.93939 -11.83887 -11.82895 -11.68521 -11.27696 -11.11742 -11.00182 -10.90336 -10.64333 -10.60787 -10.29691 -9.48780 -8.75372 -7.84000 -5.17022 0.68695 1.32736 1.46726 1.48097 1.55725 1.56954 1.67137 2.03527 2.51736 3.36643 3.39701 3.45437 3.64306 3.68592 3.75769 3.79107 3.84229 3.86279 4.13921 4.21392 4.26996 4.27556 4.36454 4.37404 4.43748 4.48163 4.52145 4.56562 4.61188 4.68372 4.74635 4.80640 4.89090 4.91800 5.06526 5.10288 5.14944 5.20598 5.31483 5.32789 5.37409 5.44930 5.53881 5.57482 5.62787 5.65650 5.76306 5.83558 6.25749 6.51620 7.08651 7.10416 7.55850 7.77815 8.57028 9.29444 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.023929 B = 0.002553 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.829937 B =10966.678320 C =11294.510417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.961 3.039 4 H -0.291 1.291 5 H -0.301 1.301 6 H -0.267 1.267 7 C -0.210 4.210 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.173 3.827 11 C -0.107 4.107 12 H 0.068 0.932 13 C -0.082 4.082 14 H 0.094 0.906 15 C 0.127 3.873 16 C -0.081 4.081 17 H 0.112 0.888 18 C -0.098 4.098 19 C -0.118 4.118 20 C 0.167 3.833 21 H 0.064 0.936 22 N -0.601 5.601 23 C 0.520 3.480 24 O -0.589 6.589 25 C -0.135 4.135 26 C 0.133 3.867 27 N -0.289 5.289 28 C -0.034 4.034 29 C -0.064 4.064 30 N -0.312 5.312 31 N -0.123 5.123 32 C 0.114 3.886 33 H 0.244 0.756 34 H 0.053 0.947 35 H -0.011 1.011 36 H 0.062 0.938 37 H 0.013 0.987 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.133 0.867 45 H 0.101 0.899 46 H 0.231 0.769 47 H 0.218 0.782 48 H 0.094 0.906 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 -15.268 16.488 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.791 3.209 4 H -0.218 1.218 5 H -0.228 1.228 6 H -0.192 1.192 7 C -0.339 4.339 8 H 0.099 0.901 9 N -0.326 5.326 10 C 0.046 3.954 11 C -0.128 4.128 12 H 0.086 0.914 13 C -0.102 4.102 14 H 0.112 0.888 15 C 0.001 3.999 16 C -0.099 4.099 17 H 0.130 0.870 18 C -0.135 4.135 19 C -0.157 4.157 20 C 0.063 3.937 21 H 0.082 0.918 22 N -0.333 5.333 23 C 0.309 3.691 24 O -0.470 6.470 25 C -0.175 4.175 26 C 0.012 3.988 27 N -0.083 5.083 28 C -0.186 4.186 29 C -0.222 4.222 30 N -0.177 5.177 31 N -0.102 5.102 32 C -0.007 4.007 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.006 0.994 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.151 0.849 45 H 0.119 0.881 46 H 0.247 0.753 47 H 0.234 0.766 48 H 0.112 0.888 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.560 -15.546 15.357 22.323 hybrid contribution -0.250 2.321 0.303 2.354 sum 4.310 -13.225 15.659 20.945 Atomic orbital electron populations 1.70080 1.06371 1.25132 1.58068 1.25522 0.96106 1.00616 1.03238 0.85335 0.78039 0.80330 0.77224 1.21795 1.22842 1.19155 1.19141 0.90958 0.83188 1.40590 0.90131 1.45073 1.13787 1.00925 1.72819 1.21298 0.86609 0.94447 0.93067 1.22474 0.98322 0.97612 0.94342 0.91391 1.22012 0.94229 0.98414 0.95550 0.88771 1.21887 0.98045 0.85116 0.94809 1.21427 0.98249 0.96177 0.94031 0.86958 1.21349 0.96243 0.95132 1.00792 1.21758 0.95151 0.99307 0.99446 1.21011 0.97296 0.85517 0.89836 0.91792 1.48697 1.31540 1.26202 1.26844 1.20602 0.81574 0.86522 0.80412 1.90709 1.31185 1.55433 1.69689 1.21751 1.02053 0.96721 0.97010 1.21898 1.00243 0.82861 0.93815 1.47685 1.43741 1.08474 1.08408 1.24440 1.05964 1.02185 0.85976 1.24246 1.06932 0.91349 0.99673 1.75072 1.16708 1.26599 0.99330 1.78269 1.20666 0.88257 1.23021 1.22272 0.87224 0.94476 0.96723 0.94633 0.92876 0.99354 0.91977 0.96882 0.92078 0.91741 0.94032 0.91431 0.86567 0.86145 0.84927 0.88106 0.75283 0.76564 0.88777 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.53 10.90 21.65 0.24 -55.29 16 2 C -0.06 -3.32 5.39 84.86 0.46 -2.86 16 3 Si 0.96 44.25 29.56 68.60 2.03 46.28 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.21 -10.69 8.19 84.03 0.69 -10.00 16 8 H 0.08 3.94 7.85 -2.91 -0.02 3.91 16 9 N -0.60 -27.74 1.76 -687.55 -1.21 -28.95 16 10 C 0.17 8.03 4.63 86.63 0.40 8.43 16 11 C -0.11 -3.76 3.39 -9.88 -0.03 -3.80 16 12 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 13 C -0.08 -2.35 3.16 -10.06 -0.03 -2.39 16 14 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 15 C 0.13 4.57 5.99 86.54 0.52 5.08 16 16 C -0.08 -1.82 2.70 -10.57 -0.03 -1.85 16 17 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 18 C -0.10 -2.84 5.07 30.58 0.15 -2.68 16 19 C -0.12 -4.22 5.29 30.65 0.16 -4.06 16 20 C 0.17 5.69 2.94 44.97 0.13 5.82 16 21 H 0.06 2.58 7.19 -2.39 -0.02 2.56 16 22 N -0.60 -15.22 2.81 -790.11 -2.22 -17.45 16 23 C 0.52 12.68 7.75 87.65 0.68 13.36 16 24 O -0.59 -19.12 15.56 -3.02 -0.05 -19.17 16 25 C -0.14 -2.06 4.76 29.85 0.14 -1.92 16 26 C 0.13 1.92 5.75 86.38 0.50 2.41 16 27 N -0.29 -4.72 3.44 -347.73 -1.20 -5.91 16 28 C -0.03 -0.39 11.57 83.49 0.97 0.58 16 29 C -0.06 -0.93 12.05 83.73 1.01 0.08 16 30 N -0.31 -7.22 12.41 -58.26 -0.72 -7.95 16 31 N -0.12 -2.81 12.91 37.02 0.48 -2.33 16 32 C 0.11 2.05 5.29 86.39 0.46 2.50 16 33 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 34 H 0.05 2.85 5.66 -2.39 -0.01 2.84 16 35 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H 0.06 2.06 7.26 -2.39 -0.02 2.04 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.06 2.13 5.42 -2.39 -0.01 2.11 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.07 3.09 5.00 -2.39 -0.01 3.07 16 42 H 0.12 1.72 8.12 -2.39 -0.02 1.70 16 43 H 0.12 1.38 8.09 -2.38 -0.02 1.36 16 44 H 0.13 1.46 8.02 -2.38 -0.02 1.44 16 45 H 0.10 1.67 8.10 -2.39 -0.02 1.65 16 46 H 0.23 0.49 8.06 -2.91 -0.02 0.47 16 47 H 0.22 1.51 8.06 -2.91 -0.02 1.48 16 48 H 0.09 1.25 8.09 -2.39 -0.02 1.23 16 49 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -73.69 372.96 4.47 -69.22 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.96 Total: 12.82 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 6.17 Total: 8.72 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -4.64 Total: -117.88 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.05 Total: -19.17 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -73.69 4.47 -69.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089801359.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.129 kcal (2) G-P(sol) polarization free energy of solvation -73.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds