Wall clock time and date at job start Sat Apr 11 2020 07:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99759 * 2 1 4 4 H 1.48498 * 109.46904 * 265.36998 * 3 2 1 5 5 H 1.48496 * 109.47260 * 25.37319 * 3 2 1 6 6 H 1.48502 * 109.46664 * 145.37412 * 3 2 1 7 7 C 1.38810 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99907 * 343.41520 * 7 2 1 9 9 N 1.36937 * 120.00131 * 163.41914 * 7 2 1 10 10 C 1.48157 * 127.83257 * 160.92329 * 9 7 2 11 11 C 1.54385 * 104.56932 * 140.35562 * 10 9 7 12 12 H 1.09000 * 110.80494 * 263.79939 * 11 10 9 13 13 C 1.54159 * 105.00770 * 24.01220 * 11 10 9 14 14 H 1.08992 * 110.99936 * 239.79822 * 13 11 10 15 15 C 1.48145 * 127.83633 * 340.87931 * 9 7 2 16 16 C 1.53264 * 109.36934 * 116.41992 * 13 11 10 17 17 H 1.08996 * 110.51234 * 182.54208 * 16 13 11 18 18 C 1.53339 * 108.66051 * 60.54688 * 16 13 11 19 19 C 1.54218 * 109.79670 * 299.66808 * 18 16 13 20 20 C 1.52974 * 109.08660 * 141.63508 * 11 10 9 21 21 H 1.09001 * 109.64302 * 65.51561 * 20 11 10 22 22 C 1.53605 * 109.11722 * 305.42213 * 20 11 10 23 23 N 1.47583 * 106.72027 * 300.24544 * 22 20 11 24 24 C 1.34773 * 122.02478 * 180.02562 * 23 22 20 25 25 O 1.21280 * 120.00295 * 180.02562 * 24 23 22 26 26 C 1.50704 * 119.99798 * 0.02562 * 24 23 22 27 27 C 1.52995 * 109.46901 * 180.02562 * 26 24 23 28 28 N 1.46504 * 109.47168 * 179.97438 * 27 26 24 29 29 C 1.35311 * 125.86551 * 124.99672 * 28 27 26 30 30 C 1.35354 * 106.17529 * 180.02562 * 29 28 27 31 31 N 1.33772 * 106.49375 * 359.97438 * 30 29 28 32 32 N 1.28637 * 108.88687 * 359.74076 * 31 30 29 33 33 H 0.96996 * 120.00207 * 359.97438 * 1 2 3 34 34 H 1.08999 * 110.41994 * 21.58230 * 10 9 7 35 35 H 1.08999 * 110.41422 * 259.12360 * 10 9 7 36 36 H 1.08994 * 110.40128 * 338.31571 * 15 9 7 37 37 H 1.08996 * 110.40290 * 100.73281 * 15 9 7 38 38 H 1.08997 * 109.44738 * 59.39170 * 18 16 13 39 39 H 1.09001 * 109.44158 * 179.30024 * 18 16 13 40 40 H 1.09004 * 109.72463 * 240.16507 * 19 18 16 41 41 H 1.08999 * 109.73298 * 120.06744 * 19 18 16 42 42 H 1.09004 * 110.00198 * 58.90823 * 22 20 11 43 43 H 1.09001 * 110.00468 * 180.30904 * 22 20 11 44 44 H 1.09003 * 109.46858 * 299.99850 * 26 24 23 45 45 H 1.08991 * 109.47152 * 60.00203 * 26 24 23 46 46 H 1.09005 * 109.47461 * 299.99756 * 27 26 24 47 47 H 1.09001 * 109.47939 * 59.99785 * 27 26 24 48 48 H 1.07997 * 126.91633 * 359.97438 * 29 28 27 49 49 H 1.07994 * 126.75477 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5955 1.9899 -1.3955 5 1 1.4022 2.6789 0.5999 6 1 3.4954 1.4704 0.7956 7 6 2.0103 -1.2021 -0.0005 8 1 1.5040 -2.1181 0.2660 9 7 3.3370 -1.2266 -0.3390 10 6 4.3318 -2.2829 -0.0397 11 6 5.1869 -2.3854 -1.3210 12 1 4.8285 -3.1906 -1.9623 13 6 5.0390 -1.0144 -2.0103 14 1 4.6092 -1.1222 -3.0060 15 6 4.1028 -0.2034 -1.0881 16 6 6.4050 -0.3212 -2.0614 17 1 6.3139 0.6700 -2.5054 18 6 7.3701 -1.1978 -2.8686 19 6 7.5181 -2.5742 -2.1891 20 6 6.6482 -2.6136 -0.9303 21 1 6.7503 -3.5840 -0.4445 22 6 7.0900 -1.5038 0.0354 23 7 6.9230 -0.2251 -0.6823 24 6 7.2246 0.9586 -0.1131 25 8 7.0727 1.9877 -0.7367 26 6 7.7506 1.0037 1.2985 27 6 8.0100 2.4571 1.6999 28 7 8.5208 2.5009 3.0723 29 6 9.6732 3.0875 3.4709 30 6 9.7534 2.8911 4.8077 31 7 8.6603 2.2036 5.1569 32 7 7.9476 1.9932 4.1069 33 1 -0.4850 0.8400 0.0004 34 1 3.8318 -3.2305 0.1605 35 1 4.9514 -1.9923 0.8087 36 1 3.4299 0.4167 -1.6803 37 1 4.6846 0.4130 -0.4029 38 1 6.9773 -1.3376 -3.8757 39 1 8.3434 -0.7102 -2.9236 40 1 8.5599 -2.7386 -1.9141 41 1 7.1984 -3.3592 -2.8744 42 1 6.4568 -1.5078 0.9227 43 1 8.1322 -1.6496 0.3193 44 1 7.0156 0.5661 1.9742 45 1 8.6806 0.4384 1.3579 46 1 8.7448 2.8951 1.0242 47 1 7.0798 3.0221 1.6406 48 1 10.3860 3.6070 2.8478 49 1 10.5443 3.2240 5.4635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089801362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:37 Heat of formation + Delta-G solvation = 109.382133 kcal Electronic energy + Delta-G solvation = -32165.542924 eV Core-core repulsion = 28131.043539 eV Total energy + Delta-G solvation = -4034.499385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -43.40815 -41.41878 -38.91964 -35.96373 -35.42560 -33.37142 -32.39131 -32.14685 -31.25000 -30.91137 -29.66525 -27.19982 -26.22389 -24.87893 -24.85644 -22.87345 -22.31082 -21.51151 -21.18792 -20.59304 -19.94273 -18.21937 -17.11981 -16.95996 -16.70069 -16.52885 -16.36635 -16.09451 -15.41489 -15.04326 -15.01915 -14.60309 -14.32748 -14.03264 -13.80090 -13.47553 -13.16252 -13.05868 -12.88274 -12.78091 -12.72301 -12.13172 -12.07194 -12.01137 -11.84063 -11.65374 -11.59611 -11.23753 -11.11495 -11.06804 -10.89918 -10.48801 -10.41317 -10.31362 -10.01071 -9.98744 -9.77057 -9.69447 -9.57883 -9.36954 -8.78703 -8.53809 -7.08933 -5.92696 -3.26330 1.41044 2.05161 2.41974 2.52472 2.92487 3.35497 3.50437 3.50962 4.10861 4.25521 4.30379 4.45150 4.50464 4.54560 4.62601 4.71062 4.79944 4.83858 4.90669 5.01039 5.06523 5.14729 5.20395 5.23191 5.26403 5.32458 5.36982 5.40919 5.50502 5.54085 5.59727 5.69493 5.76425 5.78294 5.89787 5.95897 5.98932 6.08962 6.09596 6.12536 6.27348 6.34328 6.47013 6.48191 6.69012 6.74414 6.76525 7.39307 7.61608 8.05282 8.32161 8.34788 8.78579 9.67255 10.21916 11.23730 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.004391 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.934752 B = 6375.796273 C = 8116.180590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.020 3.980 3 Si 0.889 3.111 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.235 4.235 8 H 0.094 0.906 9 N -0.606 5.606 10 C 0.128 3.872 11 C -0.092 4.092 12 H 0.079 0.921 13 C -0.108 4.108 14 H 0.086 0.914 15 C 0.110 3.890 16 C 0.149 3.851 17 H 0.103 0.897 18 C -0.125 4.125 19 C -0.109 4.109 20 C -0.091 4.091 21 H 0.087 0.913 22 C 0.107 3.893 23 N -0.596 5.596 24 C 0.528 3.472 25 O -0.546 6.546 26 C -0.153 4.153 27 C 0.131 3.869 28 N -0.289 5.289 29 C -0.051 4.051 30 C -0.055 4.055 31 N -0.273 5.273 32 N -0.079 5.079 33 H 0.263 0.737 34 H 0.054 0.946 35 H 0.031 0.969 36 H 0.062 0.938 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.115 0.885 47 H 0.110 0.890 48 H 0.190 0.810 49 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.440 -0.713 -1.660 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.178 4.178 3 Si 0.720 3.280 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.200 1.200 7 C -0.362 4.362 8 H 0.112 0.888 9 N -0.330 5.330 10 C 0.002 3.998 11 C -0.112 4.112 12 H 0.098 0.902 13 C -0.129 4.129 14 H 0.105 0.895 15 C -0.016 4.016 16 C 0.046 3.954 17 H 0.121 0.879 18 C -0.163 4.163 19 C -0.147 4.147 20 C -0.110 4.110 21 H 0.106 0.894 22 C -0.015 4.015 23 N -0.329 5.329 24 C 0.315 3.685 25 O -0.425 6.425 26 C -0.194 4.194 27 C 0.010 3.990 28 N -0.083 5.083 29 C -0.202 4.202 30 C -0.213 4.213 31 N -0.139 5.139 32 N -0.060 5.060 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.132 0.868 45 H 0.119 0.881 46 H 0.134 0.866 47 H 0.129 0.871 48 H 0.207 0.793 49 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 22.814 -0.853 -1.410 22.874 hybrid contribution 1.346 1.591 -0.472 2.137 sum 24.161 0.738 -1.882 24.245 Atomic orbital electron populations 1.69766 1.05396 1.26516 1.54261 1.24981 0.95223 0.97364 1.00209 0.86905 0.79083 0.84534 0.77434 1.21548 1.23155 1.19987 1.18662 0.81075 0.94925 1.41505 0.88818 1.45262 1.05785 1.19555 1.62439 1.21892 0.90816 0.93435 0.93665 1.22102 0.93244 0.97056 0.98815 0.90225 1.22528 0.94207 0.95697 1.00477 0.89542 1.22173 0.93286 0.92726 0.93401 1.21406 0.92822 1.00122 0.81028 0.87946 1.22105 0.99350 0.95618 0.99233 1.21714 0.99162 0.97093 0.96752 1.21407 0.95820 0.98140 0.95616 0.89433 1.22194 1.00503 0.82747 0.96021 1.48375 1.63551 1.05760 1.15169 1.19950 0.77742 0.83237 0.87572 1.90715 1.54544 1.32569 1.64670 1.21870 1.04513 0.96985 0.96004 1.21874 1.03171 0.98399 0.75604 1.47602 1.15230 1.35695 1.09784 1.23724 0.92879 1.05898 0.97678 1.23638 0.99999 1.03750 0.93881 1.75159 1.04046 1.14987 1.19736 1.78397 1.20651 1.17941 0.88971 0.92693 0.92771 0.95116 0.92014 0.94742 0.90730 0.91907 0.92100 0.91375 0.89884 0.91414 0.86797 0.88135 0.86645 0.87138 0.79300 0.79412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.74 13.97 55.49 0.78 -27.96 16 2 C 0.02 0.60 5.49 -17.43 -0.10 0.51 16 3 Si 0.89 23.79 24.49 -169.99 -4.16 19.63 16 4 H -0.29 -7.54 6.35 56.52 0.36 -7.18 16 5 H -0.30 -8.25 7.11 56.52 0.40 -7.85 16 6 H -0.27 -7.28 6.33 56.52 0.36 -6.92 16 7 C -0.23 -6.67 10.78 -15.06 -0.16 -6.84 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 9 N -0.61 -14.38 3.19 -168.84 -0.54 -14.92 16 10 C 0.13 2.34 6.54 -2.40 -0.02 2.32 16 11 C -0.09 -1.32 3.11 -89.30 -0.28 -1.60 16 12 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 13 C -0.11 -1.75 3.17 -89.13 -0.28 -2.03 16 14 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 15 C 0.11 2.38 4.06 -2.39 -0.01 2.37 16 16 C 0.15 2.05 2.94 -67.00 -0.20 1.85 16 17 H 0.10 1.57 7.19 -51.93 -0.37 1.20 16 18 C -0.12 -1.28 5.88 -25.92 -0.15 -1.43 16 19 C -0.11 -0.99 5.77 -26.06 -0.15 -1.14 16 20 C -0.09 -0.96 2.83 -90.28 -0.26 -1.21 16 21 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 22 C 0.11 1.18 4.96 -3.14 -0.02 1.16 16 23 N -0.60 -7.89 1.92 -163.67 -0.31 -8.21 16 24 C 0.53 7.36 6.97 -10.99 -0.08 7.29 16 25 O -0.55 -9.22 15.56 5.56 0.09 -9.13 16 26 C -0.15 -1.67 4.77 -27.88 -0.13 -1.81 16 27 C 0.13 1.35 5.74 -4.04 -0.02 1.32 16 28 N -0.29 -3.25 3.44 -61.26 -0.21 -3.46 16 29 C -0.05 -0.43 11.57 -17.05 -0.20 -0.63 16 30 C -0.06 -0.54 12.05 -17.73 -0.21 -0.76 16 31 N -0.27 -3.86 12.41 30.23 0.38 -3.49 16 32 N -0.08 -1.16 12.92 60.35 0.78 -0.38 16 33 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.03 0.54 5.28 -51.93 -0.27 0.27 16 36 H 0.06 1.50 5.07 -51.93 -0.26 1.24 16 37 H 0.03 0.79 4.94 -51.93 -0.26 0.53 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.02 5.72 -51.93 -0.30 0.72 16 43 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 44 H 0.11 1.41 8.09 -51.93 -0.42 0.99 16 45 H 0.10 0.85 8.12 -51.93 -0.42 0.43 16 46 H 0.12 0.90 8.03 -51.93 -0.42 0.49 16 47 H 0.11 1.32 8.10 -51.93 -0.42 0.89 16 48 H 0.19 0.80 8.06 -52.49 -0.42 0.38 16 49 H 0.19 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -36.41 370.59 -7.32 -43.73 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.44 Total: -0.77 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.26 Total: -0.63 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.87 Total: -58.42 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.16 Total: 19.63 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.41 -7.32 -43.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089801362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.111 kcal (2) G-P(sol) polarization free energy of solvation -36.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds