Wall clock time and date at job start Sat Apr 11 2020 07:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99759 * 2 1 4 4 H 1.48498 * 109.46904 * 265.36998 * 3 2 1 5 5 H 1.48496 * 109.47260 * 25.37319 * 3 2 1 6 6 H 1.48502 * 109.46664 * 145.37412 * 3 2 1 7 7 C 1.38810 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99907 * 343.41520 * 7 2 1 9 9 N 1.36937 * 120.00131 * 163.41914 * 7 2 1 10 10 C 1.48157 * 127.83257 * 160.92329 * 9 7 2 11 11 C 1.54385 * 104.56932 * 140.35562 * 10 9 7 12 12 H 1.09000 * 110.80494 * 263.79939 * 11 10 9 13 13 C 1.54159 * 105.00770 * 24.01220 * 11 10 9 14 14 H 1.08992 * 110.99936 * 239.79822 * 13 11 10 15 15 C 1.48145 * 127.83633 * 340.87931 * 9 7 2 16 16 C 1.53264 * 109.36934 * 116.41992 * 13 11 10 17 17 H 1.08996 * 110.51234 * 182.54208 * 16 13 11 18 18 C 1.53339 * 108.66051 * 60.54688 * 16 13 11 19 19 C 1.54218 * 109.79670 * 299.66808 * 18 16 13 20 20 C 1.52974 * 109.08660 * 141.63508 * 11 10 9 21 21 H 1.09001 * 109.64302 * 65.51561 * 20 11 10 22 22 C 1.53605 * 109.11722 * 305.42213 * 20 11 10 23 23 N 1.47583 * 106.72027 * 300.24544 * 22 20 11 24 24 C 1.34773 * 122.02478 * 180.02562 * 23 22 20 25 25 O 1.21280 * 120.00295 * 180.02562 * 24 23 22 26 26 C 1.50704 * 119.99798 * 0.02562 * 24 23 22 27 27 C 1.52995 * 109.46901 * 180.02562 * 26 24 23 28 28 N 1.46504 * 109.47168 * 179.97438 * 27 26 24 29 29 C 1.35311 * 125.86551 * 124.99672 * 28 27 26 30 30 C 1.35354 * 106.17529 * 180.02562 * 29 28 27 31 31 N 1.33772 * 106.49375 * 359.97438 * 30 29 28 32 32 N 1.28637 * 108.88687 * 359.74076 * 31 30 29 33 33 H 0.96996 * 120.00207 * 359.97438 * 1 2 3 34 34 H 1.08999 * 110.41994 * 21.58230 * 10 9 7 35 35 H 1.08999 * 110.41422 * 259.12360 * 10 9 7 36 36 H 1.08994 * 110.40128 * 338.31571 * 15 9 7 37 37 H 1.08996 * 110.40290 * 100.73281 * 15 9 7 38 38 H 1.08997 * 109.44738 * 59.39170 * 18 16 13 39 39 H 1.09001 * 109.44158 * 179.30024 * 18 16 13 40 40 H 1.09004 * 109.72463 * 240.16507 * 19 18 16 41 41 H 1.08999 * 109.73298 * 120.06744 * 19 18 16 42 42 H 1.09004 * 110.00198 * 58.90823 * 22 20 11 43 43 H 1.09001 * 110.00468 * 180.30904 * 22 20 11 44 44 H 1.09003 * 109.46858 * 299.99850 * 26 24 23 45 45 H 1.08991 * 109.47152 * 60.00203 * 26 24 23 46 46 H 1.09005 * 109.47461 * 299.99756 * 27 26 24 47 47 H 1.09001 * 109.47939 * 59.99785 * 27 26 24 48 48 H 1.07997 * 126.91633 * 359.97438 * 29 28 27 49 49 H 1.07994 * 126.75477 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5955 1.9899 -1.3955 5 1 1.4022 2.6789 0.5999 6 1 3.4954 1.4704 0.7956 7 6 2.0103 -1.2021 -0.0005 8 1 1.5040 -2.1181 0.2660 9 7 3.3370 -1.2266 -0.3390 10 6 4.3318 -2.2829 -0.0397 11 6 5.1869 -2.3854 -1.3210 12 1 4.8285 -3.1906 -1.9623 13 6 5.0390 -1.0144 -2.0103 14 1 4.6092 -1.1222 -3.0060 15 6 4.1028 -0.2034 -1.0881 16 6 6.4050 -0.3212 -2.0614 17 1 6.3139 0.6700 -2.5054 18 6 7.3701 -1.1978 -2.8686 19 6 7.5181 -2.5742 -2.1891 20 6 6.6482 -2.6136 -0.9303 21 1 6.7503 -3.5840 -0.4445 22 6 7.0900 -1.5038 0.0354 23 7 6.9230 -0.2251 -0.6823 24 6 7.2246 0.9586 -0.1131 25 8 7.0727 1.9877 -0.7367 26 6 7.7506 1.0037 1.2985 27 6 8.0100 2.4571 1.6999 28 7 8.5208 2.5009 3.0723 29 6 9.6732 3.0875 3.4709 30 6 9.7534 2.8911 4.8077 31 7 8.6603 2.2036 5.1569 32 7 7.9476 1.9932 4.1069 33 1 -0.4850 0.8400 0.0004 34 1 3.8318 -3.2305 0.1605 35 1 4.9514 -1.9923 0.8087 36 1 3.4299 0.4167 -1.6803 37 1 4.6846 0.4130 -0.4029 38 1 6.9773 -1.3376 -3.8757 39 1 8.3434 -0.7102 -2.9236 40 1 8.5599 -2.7386 -1.9141 41 1 7.1984 -3.3592 -2.8744 42 1 6.4568 -1.5078 0.9227 43 1 8.1322 -1.6496 0.3193 44 1 7.0156 0.5661 1.9742 45 1 8.6806 0.4384 1.3579 46 1 8.7448 2.8951 1.0242 47 1 7.0798 3.0221 1.6406 48 1 10.3860 3.6070 2.8478 49 1 10.5443 3.2240 5.4635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089801362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:35 Heat of formation + Delta-G solvation = 83.644566 kcal Electronic energy + Delta-G solvation = -32166.658989 eV Core-core repulsion = 28131.043539 eV Total energy + Delta-G solvation = -4035.615450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -44.22024 -42.51348 -40.04869 -37.50071 -36.29973 -34.59814 -34.01935 -33.42349 -32.03928 -31.77241 -31.28839 -28.59935 -27.26444 -26.59868 -25.74088 -23.66171 -23.38007 -22.74291 -22.39904 -21.92067 -20.98609 -19.19026 -18.88042 -17.96629 -17.83167 -17.64020 -17.41007 -17.32742 -16.64436 -16.31731 -15.79858 -15.74639 -15.60422 -15.34880 -14.86864 -14.68245 -14.58035 -14.36878 -14.28671 -13.97375 -13.65365 -13.53231 -13.22754 -13.14021 -13.02730 -12.86701 -12.66882 -12.57610 -12.47366 -12.38660 -12.00214 -11.89118 -11.86182 -11.70591 -11.37357 -11.21235 -11.09128 -11.03558 -10.91089 -10.73976 -10.35308 -9.57110 -9.13774 -8.25328 -5.51462 0.63880 1.15288 1.24931 1.26107 1.30353 1.47760 1.63234 1.98137 2.28508 2.98802 3.21974 3.32754 3.37037 3.55591 3.62593 3.65670 3.70570 3.75731 3.98228 4.08737 4.12690 4.15817 4.21246 4.26131 4.31170 4.35800 4.38721 4.42957 4.48942 4.51809 4.60156 4.63547 4.67254 4.83991 4.85760 4.89925 4.99437 5.03429 5.06543 5.19409 5.27461 5.29023 5.36762 5.37668 5.44485 5.56604 5.60116 5.61041 6.03958 6.38417 6.64762 7.01185 7.44255 7.51510 8.10935 8.95539 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.004391 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.934752 B = 6375.796273 C = 8116.180590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.035 4.035 3 Si 0.944 3.056 4 H -0.285 1.285 5 H -0.310 1.310 6 H -0.277 1.277 7 C -0.215 4.215 8 H 0.070 0.930 9 N -0.629 5.629 10 C 0.121 3.879 11 C -0.080 4.080 12 H 0.091 0.909 13 C -0.102 4.102 14 H 0.088 0.912 15 C 0.110 3.890 16 C 0.149 3.851 17 H 0.079 0.921 18 C -0.116 4.116 19 C -0.101 4.101 20 C -0.083 4.083 21 H 0.116 0.884 22 C 0.102 3.898 23 N -0.598 5.598 24 C 0.520 3.480 25 O -0.583 6.583 26 C -0.141 4.141 27 C 0.133 3.867 28 N -0.291 5.291 29 C -0.030 4.030 30 C -0.064 4.064 31 N -0.313 5.313 32 N -0.134 5.134 33 H 0.261 0.739 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.133 0.867 46 H 0.146 0.854 47 H 0.085 0.915 48 H 0.238 0.762 49 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.484 -1.836 -2.578 29.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.229 4.229 3 Si 0.776 3.224 4 H -0.213 1.213 5 H -0.239 1.239 6 H -0.202 1.202 7 C -0.344 4.344 8 H 0.088 0.912 9 N -0.354 5.354 10 C -0.003 4.003 11 C -0.100 4.100 12 H 0.109 0.891 13 C -0.123 4.123 14 H 0.106 0.894 15 C -0.015 4.015 16 C 0.046 3.954 17 H 0.097 0.903 18 C -0.154 4.154 19 C -0.139 4.139 20 C -0.102 4.102 21 H 0.134 0.866 22 C -0.019 4.019 23 N -0.330 5.330 24 C 0.309 3.691 25 O -0.465 6.465 26 C -0.182 4.182 27 C 0.012 3.988 28 N -0.084 5.084 29 C -0.181 4.181 30 C -0.221 4.221 31 N -0.178 5.178 32 N -0.113 5.113 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.151 0.849 46 H 0.164 0.836 47 H 0.103 0.897 48 H 0.254 0.746 49 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 27.902 -2.032 -2.324 28.072 hybrid contribution -0.181 1.908 -0.168 1.924 sum 27.721 -0.124 -2.492 27.833 Atomic orbital electron populations 1.69867 1.06651 1.26864 1.57400 1.25475 0.95729 0.99865 1.01799 0.86005 0.77563 0.81559 0.77267 1.21276 1.23885 1.20232 1.18676 0.83301 0.93738 1.38670 0.91211 1.45414 1.05275 1.21539 1.63215 1.22210 0.90208 0.91536 0.96389 1.22038 0.95608 0.96013 0.96323 0.89104 1.22478 0.94436 0.96114 0.99238 0.89357 1.22137 0.93194 0.92671 0.93536 1.21330 0.92418 0.99526 0.82136 0.90299 1.22060 0.98598 0.95773 0.99018 1.21709 1.00251 0.96250 0.95672 1.21443 0.92801 0.99207 0.96746 0.86594 1.22421 1.02581 0.81654 0.95224 1.48529 1.62806 1.06542 1.15149 1.20455 0.77372 0.82931 0.88385 1.90694 1.56177 1.33831 1.65759 1.21777 1.05215 0.97815 0.93363 1.21888 1.03182 0.97919 0.75832 1.47690 1.15868 1.35539 1.09344 1.24513 0.91960 1.03849 0.97764 1.24318 0.99628 1.02989 0.95210 1.75092 1.05762 1.16487 1.20436 1.78372 1.22256 1.20684 0.89967 0.92963 0.92938 0.93826 0.95503 0.95862 0.89856 0.90764 0.89439 0.90002 0.91648 0.87451 0.88662 0.84945 0.83570 0.89657 0.74592 0.76194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.95 13.97 21.65 0.30 -62.64 16 2 C -0.03 -2.15 5.49 84.86 0.47 -1.68 16 3 Si 0.94 51.92 24.49 68.60 1.68 53.60 16 4 H -0.29 -15.33 6.35 99.48 0.63 -14.70 16 5 H -0.31 -17.18 7.11 99.48 0.71 -16.47 16 6 H -0.28 -15.04 6.33 99.48 0.63 -14.41 16 7 C -0.22 -12.67 10.78 84.03 0.91 -11.77 16 8 H 0.07 4.37 8.06 -2.91 -0.02 4.35 16 9 N -0.63 -30.39 3.19 -688.08 -2.20 -32.59 16 10 C 0.12 4.29 6.54 86.53 0.57 4.86 16 11 C -0.08 -2.08 3.11 -9.94 -0.03 -2.12 16 12 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 13 C -0.10 -3.18 3.17 -9.83 -0.03 -3.21 16 14 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 15 C 0.11 4.83 4.06 86.55 0.35 5.18 16 16 C 0.15 3.82 2.94 44.98 0.13 3.95 16 17 H 0.08 2.40 7.19 -2.39 -0.02 2.38 16 18 C -0.12 -1.89 5.88 31.12 0.18 -1.71 16 19 C -0.10 -1.23 5.77 31.03 0.18 -1.05 16 20 C -0.08 -1.36 2.83 -10.58 -0.03 -1.39 16 21 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 22 C 0.10 1.85 4.96 86.38 0.43 2.28 16 23 N -0.60 -14.50 1.92 -790.11 -1.51 -16.02 16 24 C 0.52 13.83 6.97 87.66 0.61 14.44 16 25 O -0.58 -19.51 15.56 -3.03 -0.05 -19.56 16 26 C -0.14 -2.86 4.77 29.85 0.14 -2.72 16 27 C 0.13 2.56 5.74 86.38 0.50 3.05 16 28 N -0.29 -6.07 3.44 -347.73 -1.20 -7.26 16 29 C -0.03 -0.41 11.57 83.49 0.97 0.56 16 30 C -0.06 -1.10 12.05 83.73 1.01 -0.09 16 31 N -0.31 -8.70 12.41 -58.26 -0.72 -9.42 16 32 N -0.13 -3.89 12.92 37.02 0.48 -3.41 16 33 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.04 1.48 5.28 -2.39 -0.01 1.47 16 36 H 0.03 1.35 5.07 -2.39 -0.01 1.34 16 37 H 0.02 1.09 4.94 -2.39 -0.01 1.08 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 1.44 5.72 -2.39 -0.01 1.43 16 43 H 0.11 1.18 8.13 -2.39 -0.02 1.16 16 44 H 0.10 2.34 8.09 -2.39 -0.02 2.32 16 45 H 0.13 1.77 8.12 -2.39 -0.02 1.76 16 46 H 0.15 1.87 8.03 -2.38 -0.02 1.85 16 47 H 0.09 2.08 8.10 -2.39 -0.02 2.06 16 48 H 0.24 0.71 8.06 -2.91 -0.02 0.68 16 49 H 0.22 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -86.82 370.59 3.94 -82.88 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.81 Total: 5.82 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 6.34 Total: 8.60 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -4.85 Total: -131.34 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.05 Total: -19.56 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 1.68 Total: 53.60 kcal Total: -86.82 3.94 -82.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089801362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.523 kcal (2) G-P(sol) polarization free energy of solvation -86.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds