Wall clock time and date at job start Sat Apr 11 2020 07:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48491 * 109.47446 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47007 * 239.99840 * 3 2 1 6 6 H 1.48500 * 109.47230 * 120.00376 * 3 2 1 7 7 C 1.38808 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00129 * 158.18760 * 7 2 1 9 9 N 1.36939 * 119.99742 * 338.18315 * 7 2 1 10 10 C 1.48166 * 127.83459 * 163.50379 * 9 7 2 11 11 C 1.54380 * 104.56011 * 140.31322 * 10 9 7 12 12 H 1.08996 * 110.79467 * 264.49571 * 11 10 9 13 13 C 1.54165 * 104.98759 * 24.14274 * 11 10 9 14 14 H 1.09000 * 111.00597 * 239.62774 * 13 11 10 15 15 C 1.48131 * 127.84033 * 343.18794 * 9 7 2 16 16 C 1.53270 * 109.36038 * 116.23235 * 13 11 10 17 17 H 1.08999 * 110.51734 * 182.11609 * 16 13 11 18 18 C 1.53346 * 108.63793 * 60.70725 * 16 13 11 19 19 C 1.52920 * 109.60009 * 299.39639 * 18 16 13 20 20 C 1.52962 * 109.12685 * 141.78077 * 11 10 9 21 21 H 1.09006 * 109.64210 * 66.29756 * 20 11 10 22 22 C 1.53612 * 109.09435 * 305.57637 * 20 11 10 23 23 N 1.47586 * 106.70330 * 300.29473 * 22 20 11 24 24 C 1.34774 * 122.01390 * 179.97438 * 23 22 20 25 25 O 1.21277 * 119.99842 * 180.02562 * 24 23 22 26 26 C 1.50707 * 119.99834 * 0.02562 * 24 23 22 27 27 C 1.53001 * 109.46602 * 180.02562 * 26 24 23 28 28 C 1.50702 * 109.46654 * 180.02562 * 27 26 24 29 29 C 1.35354 * 126.90685 * 274.67718 * 28 27 26 30 30 N 1.33780 * 106.49445 * 179.90674 * 29 28 27 31 31 N 1.28635 * 108.88293 * 0.37438 * 30 29 28 32 32 N 1.28711 * 110.18167 * 359.76007 * 31 30 29 33 33 H 0.96997 * 125.86957 * 180.02562 * 32 31 30 34 34 H 0.96997 * 119.99850 * 173.95218 * 1 2 3 35 35 H 1.08993 * 110.41923 * 259.08624 * 10 9 7 36 36 H 1.09002 * 110.41745 * 21.54164 * 10 9 7 37 37 H 1.09005 * 110.40042 * 338.25831 * 15 9 7 38 38 H 1.08996 * 110.40474 * 100.67761 * 15 9 7 39 39 H 1.08999 * 109.44637 * 59.43108 * 18 16 13 40 40 H 1.08994 * 109.44641 * 179.38320 * 18 16 13 41 41 H 1.09000 * 109.37660 * 120.71101 * 19 18 16 42 42 H 1.09007 * 109.37425 * 240.47068 * 19 18 16 43 43 H 1.08991 * 110.01026 * 59.59714 * 22 20 11 44 44 H 1.09005 * 110.00080 * 180.91136 * 22 20 11 45 45 H 1.09000 * 109.46944 * 299.99819 * 26 24 23 46 46 H 1.08998 * 109.46934 * 60.00502 * 26 24 23 47 47 H 1.09000 * 109.47012 * 299.99397 * 27 26 24 48 48 H 1.08993 * 109.47790 * 60.00227 * 27 26 24 49 49 H 1.07998 * 126.75438 * 0.04305 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0323 -1.2354 -0.3481 9 7 1.3991 -2.3457 0.4397 10 6 1.8234 -3.7474 0.2146 11 6 1.5497 -4.4563 1.5585 12 1 2.4505 -4.4848 2.1714 13 6 0.4522 -3.6132 2.2377 14 1 0.7942 -3.2272 3.1980 15 6 0.1673 -2.4620 1.2543 16 6 -0.8159 -4.4599 2.3930 17 1 -1.6171 -3.8699 2.8380 18 6 -0.4902 -5.6735 3.2720 19 6 0.6000 -6.5127 2.6044 20 6 1.0240 -5.8662 1.2834 21 1 1.8067 -6.4646 0.8171 22 6 -0.1967 -5.7751 0.3553 23 7 -1.2036 -4.9562 1.0579 24 6 -2.4050 -4.6789 0.5137 25 8 -3.2051 -4.0015 1.1235 26 6 -2.7541 -5.2105 -0.8525 27 6 -4.1639 -4.7534 -1.2326 28 6 -4.5133 -5.2855 -2.5985 29 6 -4.2125 -4.7219 -3.7918 30 7 -4.7123 -5.5325 -4.7315 31 7 -5.2914 -6.5276 -4.1578 32 7 -5.1960 -6.4197 -2.8788 33 1 -5.5520 -7.0443 -2.2276 34 1 -0.4850 -0.8354 -0.0885 35 1 1.2327 -4.2003 -0.5815 36 1 2.8853 -3.7889 -0.0279 37 1 -0.0173 -1.5357 1.7984 38 1 -0.6851 -2.7083 0.6213 39 1 -0.1401 -5.3325 4.2463 40 1 -1.3869 -6.2797 3.4002 41 1 1.4623 -6.5792 3.2678 42 1 0.2165 -7.5140 2.4084 43 1 0.0833 -5.2974 -0.5834 44 1 -0.5935 -6.7719 0.1624 45 1 -2.0401 -4.8311 -1.5834 46 1 -2.7163 -6.2998 -0.8390 47 1 -4.8782 -5.1325 -0.5018 48 1 -4.2015 -3.6642 -1.2462 49 1 -3.6730 -3.8004 -3.9536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089868105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:37:53 Heat of formation + Delta-G solvation = 87.115316 kcal Electronic energy + Delta-G solvation = -31940.907595 eV Core-core repulsion = 27905.442649 eV Total energy + Delta-G solvation = -4035.464947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.46825 -41.29656 -38.71172 -35.88883 -34.61064 -33.37664 -33.18645 -32.28276 -32.02155 -29.99885 -29.04795 -26.78485 -25.97203 -24.73563 -24.59332 -23.13402 -22.28921 -21.66691 -20.77549 -20.51966 -19.69316 -18.46627 -17.59862 -17.24163 -16.56408 -16.32758 -16.30238 -15.76301 -15.33930 -14.68467 -14.50319 -14.33504 -13.98832 -13.90053 -13.67451 -13.44418 -13.16478 -12.95397 -12.90216 -12.59549 -12.39966 -12.02980 -11.97572 -11.86444 -11.64049 -11.48264 -11.40767 -10.97975 -10.93677 -10.84776 -10.75165 -10.66982 -10.39854 -10.06778 -9.98221 -9.88919 -9.81464 -9.60177 -9.39915 -9.27481 -8.52089 -8.37395 -6.97637 -6.08069 -3.14242 1.34339 2.39046 2.51913 2.75168 3.05510 3.49135 3.52759 3.71006 4.16408 4.46047 4.51438 4.59941 4.65702 4.70542 4.74186 4.80668 4.95921 5.00917 5.06637 5.16283 5.22466 5.24328 5.33614 5.35932 5.40827 5.48308 5.51126 5.60658 5.66079 5.74684 5.79638 5.83412 5.88351 5.88733 5.97637 6.01362 6.07429 6.20061 6.20726 6.26602 6.39872 6.59610 6.61723 6.67241 6.82109 7.02355 7.09933 7.58647 7.71791 8.26561 8.29303 8.44914 8.99908 9.80713 10.42287 11.27502 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009023 B = 0.003892 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.445164 B = 7193.006884 C = 9215.568896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.027 4.027 3 Si 1.068 2.932 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.329 4.329 8 H 0.065 0.935 9 N -0.600 5.600 10 C 0.128 3.872 11 C -0.092 4.092 12 H 0.073 0.927 13 C -0.113 4.113 14 H 0.079 0.921 15 C 0.147 3.853 16 C 0.152 3.848 17 H 0.101 0.899 18 C -0.126 4.126 19 C -0.110 4.110 20 C -0.090 4.090 21 H 0.084 0.916 22 C 0.112 3.888 23 N -0.597 5.597 24 C 0.522 3.478 25 O -0.542 6.542 26 C -0.133 4.133 27 C -0.033 4.033 28 C -0.004 4.004 29 C -0.043 4.043 30 N -0.265 5.265 31 N -0.088 5.088 32 N -0.392 5.392 33 H 0.446 0.554 34 H 0.269 0.731 35 H 0.025 0.975 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.108 0.892 49 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 -17.183 3.156 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.228 4.228 3 Si 0.898 3.102 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.457 4.457 8 H 0.083 0.917 9 N -0.325 5.325 10 C 0.001 3.999 11 C -0.112 4.112 12 H 0.092 0.908 13 C -0.134 4.134 14 H 0.097 0.903 15 C 0.020 3.980 16 C 0.049 3.951 17 H 0.119 0.881 18 C -0.164 4.164 19 C -0.147 4.147 20 C -0.109 4.109 21 H 0.103 0.897 22 C -0.010 4.010 23 N -0.330 5.330 24 C 0.310 3.690 25 O -0.420 6.420 26 C -0.174 4.174 27 C -0.073 4.073 28 C -0.138 4.138 29 C -0.200 4.200 30 N -0.133 5.133 31 N -0.068 5.068 32 N -0.112 5.112 33 H 0.291 0.709 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.120 0.880 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.126 0.874 49 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.327 -15.777 2.166 16.792 hybrid contribution 0.608 -1.543 1.152 2.020 sum -4.719 -17.320 3.318 18.255 Atomic orbital electron populations 1.70768 1.06395 1.30447 1.48826 1.25762 0.96682 1.00930 0.99427 0.83474 0.74636 0.76056 0.76058 1.20992 1.22059 1.22166 1.19768 0.95941 0.86331 1.43643 0.91733 1.44998 1.28321 1.00114 1.59033 1.21848 0.97739 0.86932 0.93352 1.22100 0.97656 0.92565 0.98889 0.90826 1.22537 0.93627 0.96882 1.00361 0.90271 1.21584 0.89683 0.95307 0.91377 1.21306 0.97521 0.94226 0.82080 0.88073 1.21911 0.98709 0.96893 0.98925 1.21486 0.98608 0.98208 0.96437 1.21382 0.96432 0.97528 0.95543 0.89736 1.22081 0.88441 0.94179 0.96347 1.48347 1.14541 1.51611 1.18527 1.20262 0.81168 0.80163 0.87427 1.90709 1.48894 1.38966 1.63387 1.21641 0.98009 1.02067 0.95695 1.19899 0.95919 1.03138 0.88336 1.22362 1.01760 0.90222 0.99419 1.23551 1.05607 1.02948 0.87883 1.75114 1.10331 1.00261 1.27545 1.78272 1.20080 1.19747 0.88689 1.45122 1.38892 1.19063 1.08170 0.70878 0.91924 0.95738 0.93762 0.91990 0.95500 0.90918 0.92055 0.91674 0.92279 0.90172 0.91859 0.88043 0.89335 0.89617 0.87414 0.78946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.99 12.64 55.49 0.70 -27.29 16 2 C -0.03 -0.77 5.19 -17.43 -0.09 -0.86 16 3 Si 1.07 25.38 29.97 -169.99 -5.09 20.28 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.33 -9.17 10.24 -15.06 -0.15 -9.33 16 8 H 0.06 1.78 7.92 -52.48 -0.42 1.37 16 9 N -0.60 -14.73 3.29 -169.06 -0.56 -15.29 16 10 C 0.13 2.45 6.54 -2.40 -0.02 2.43 16 11 C -0.09 -1.41 3.12 -89.31 -0.28 -1.69 16 12 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 13 C -0.11 -1.94 3.15 -89.32 -0.28 -2.22 16 14 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 15 C 0.15 3.32 4.44 -2.59 -0.01 3.31 16 16 C 0.15 2.22 2.92 -67.00 -0.20 2.02 16 17 H 0.10 1.67 7.23 -51.93 -0.38 1.30 16 18 C -0.13 -1.41 5.85 -26.59 -0.16 -1.57 16 19 C -0.11 -1.09 5.65 -26.74 -0.15 -1.24 16 20 C -0.09 -1.02 2.88 -90.29 -0.26 -1.28 16 21 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 22 C 0.11 1.29 4.93 -3.13 -0.02 1.27 16 23 N -0.60 -8.20 1.93 -163.67 -0.32 -8.52 16 24 C 0.52 7.49 6.98 -10.98 -0.08 7.41 16 25 O -0.54 -9.65 15.58 5.56 0.09 -9.56 16 26 C -0.13 -1.39 4.62 -27.88 -0.13 -1.52 16 27 C -0.03 -0.32 5.07 -27.88 -0.14 -0.46 16 28 C 0.00 -0.04 6.56 -82.08 -0.54 -0.58 16 29 C -0.04 -0.50 11.99 -17.73 -0.21 -0.72 16 30 N -0.27 -3.68 12.41 30.24 0.38 -3.30 16 31 N -0.09 -1.09 13.38 60.35 0.81 -0.28 16 32 N -0.39 -3.52 6.98 33.55 0.23 -3.28 16 33 H 0.45 2.27 8.96 -190.41 -1.71 0.56 16 34 H 0.27 8.20 6.00 -40.82 -0.24 7.95 16 35 H 0.03 0.46 5.28 -51.93 -0.27 0.19 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.64 7.05 -51.93 -0.37 1.27 16 38 H 0.03 0.65 5.86 -51.93 -0.30 0.34 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 1.02 5.75 -51.93 -0.30 0.72 16 44 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 45 H 0.10 1.10 8.12 -51.93 -0.42 0.67 16 46 H 0.09 0.70 8.12 -51.93 -0.42 0.28 16 47 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 48 H 0.11 1.22 8.10 -51.93 -0.42 0.80 16 49 H 0.19 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -35.38 375.41 -9.50 -44.88 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.69 Total: 1.72 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.71 Total: -5.01 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 1.25 Total: -57.97 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.09 Total: 20.28 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.38 -9.50 -44.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089868105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.997 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds