Wall clock time and date at job start Sat Apr 11 2020 07:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99655 * 2 1 4 4 H 1.48504 * 109.46982 * 270.00029 * 3 2 1 5 5 H 1.48505 * 109.47141 * 30.00080 * 3 2 1 6 6 H 1.48496 * 109.46883 * 150.00057 * 3 2 1 7 7 C 1.38807 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00006 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00289 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00134 * 179.97438 * 9 7 2 11 11 C 1.53779 * 113.61207 * 155.00496 * 10 9 7 12 12 C 1.53777 * 87.08439 * 89.19982 * 11 10 9 13 13 C 1.53001 * 113.61618 * 139.97893 * 12 11 10 14 14 N 1.46498 * 109.47083 * 175.00079 * 13 12 11 15 15 C 1.34775 * 119.99816 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00229 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00077 * 179.97438 * 15 14 13 18 18 H 1.08994 * 109.53928 * 299.90700 * 17 15 14 19 19 C 1.53128 * 109.49861 * 60.00194 * 17 15 14 20 20 C 1.53112 * 109.21157 * 177.62382 * 19 17 15 21 21 C 1.53039 * 109.27972 * 302.31881 * 20 19 17 22 22 N 1.46844 * 109.52473 * 59.17849 * 21 20 19 23 23 C 1.46899 * 111.00156 * 174.15862 * 22 21 20 24 24 C 1.53008 * 109.47104 * 76.91042 * 23 22 21 25 25 F 1.39902 * 109.47011 * 306.13403 * 24 23 22 26 26 F 1.39898 * 109.46674 * 66.12954 * 24 23 22 27 27 C 1.46846 * 111.19717 * 298.25785 * 22 21 20 28 28 C 1.53783 * 113.68985 * 252.53921 * 10 9 7 29 29 H 0.96998 * 120.00107 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99689 * 0.02562 * 9 7 2 31 31 H 1.08995 * 112.85037 * 23.80572 * 10 9 7 32 32 H 1.09003 * 113.61362 * 334.64773 * 11 10 9 33 33 H 1.09005 * 113.68913 * 203.76002 * 11 10 9 34 34 H 1.09004 * 113.61602 * 270.79946 * 12 11 10 35 35 H 1.09002 * 109.46978 * 54.99870 * 13 12 11 36 36 H 1.09003 * 109.46848 * 295.00124 * 13 12 11 37 37 H 0.96996 * 120.00145 * 0.02562 * 14 13 12 38 38 H 1.09006 * 109.51961 * 57.69032 * 19 17 15 39 39 H 1.08998 * 109.52584 * 297.56597 * 19 17 15 40 40 H 1.09006 * 109.50359 * 62.25429 * 20 19 17 41 41 H 1.09000 * 109.50592 * 182.37384 * 20 19 17 42 42 H 1.09012 * 109.46227 * 179.19421 * 21 20 19 43 43 H 1.08997 * 109.46050 * 299.17050 * 21 20 19 44 44 H 1.08996 * 109.47472 * 196.91012 * 23 22 21 45 45 H 1.09003 * 109.47320 * 316.91957 * 23 22 21 46 46 H 1.08991 * 109.47182 * 186.13001 * 24 23 22 47 47 H 1.09007 * 109.46124 * 181.76057 * 27 22 21 48 48 H 1.08999 * 109.46167 * 301.73220 * 27 22 21 49 49 H 1.09002 * 113.61388 * 156.32809 * 28 10 9 50 50 H 1.08991 * 113.61620 * 25.41909 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4707 0.0011 11 6 5.5260 -2.3662 -0.5949 12 6 6.0135 -2.0246 0.8230 13 6 7.3476 -2.6794 1.1868 14 7 7.7836 -2.2016 2.5013 15 6 8.9406 -2.6466 3.0302 16 8 9.6210 -3.4422 2.4178 17 6 9.3895 -2.1547 4.3821 18 1 9.5147 -1.0723 4.3531 19 6 8.3380 -2.5196 5.4338 20 6 8.8276 -2.0697 6.8130 21 6 10.1753 -2.7309 7.1112 22 7 11.1477 -2.3504 6.0788 23 6 12.4881 -2.8539 6.4069 24 6 12.5606 -4.3506 6.0976 25 9 11.5178 -5.0134 6.7536 26 9 12.4433 -4.5476 4.7175 27 6 10.7219 -2.8135 4.7519 28 6 4.7877 -2.7930 1.3446 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3619 -0.0004 31 1 3.5279 -3.2972 -0.4031 32 1 5.6409 -1.5475 -1.3053 33 1 5.9127 -3.3125 -0.9734 34 1 5.9901 -0.9583 1.0477 35 1 8.0962 -2.4186 0.4387 36 1 7.2249 -3.7621 1.2161 37 1 7.2393 -1.5656 2.9912 38 1 8.1843 -3.5988 5.4360 39 1 7.3989 -2.0184 5.1992 40 1 8.9441 -0.9860 6.8222 41 1 8.1019 -2.3648 7.5709 42 1 10.5335 -2.4014 8.0866 43 1 10.0553 -3.8142 7.1154 44 1 13.2313 -2.3235 5.8117 45 1 12.6879 -2.6919 7.4662 46 1 13.5161 -4.7468 6.4412 47 1 11.4772 -2.5441 4.0135 48 1 10.5992 -3.8965 4.7673 49 1 4.9714 -3.8566 1.4969 50 1 4.3067 -2.3188 2.2000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091206206.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:09 Heat of formation + Delta-G solvation = -101.863274 kcal Electronic energy + Delta-G solvation = -31079.141677 eV Core-core repulsion = 26584.792817 eV Total energy + Delta-G solvation = -4494.348860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.55985 -47.43601 -40.40697 -39.02535 -38.24954 -34.79539 -34.40111 -33.19990 -31.45446 -30.64778 -29.47791 -27.62406 -25.19326 -24.72358 -24.37812 -23.24752 -22.56743 -21.73421 -20.83357 -20.06042 -18.65280 -18.12160 -17.80783 -17.67472 -17.23508 -16.67342 -16.23653 -15.81958 -15.28778 -15.12956 -14.99895 -14.75416 -14.42997 -14.39527 -13.99085 -13.83461 -13.70466 -13.64969 -13.44461 -13.14535 -13.00626 -12.73427 -12.64348 -12.47983 -12.28165 -12.06112 -12.04065 -11.60073 -11.56839 -11.37617 -11.22209 -11.02740 -10.93149 -10.72432 -10.51715 -10.27149 -10.14320 -9.77867 -9.66114 -9.51063 -9.03964 -8.92819 -8.68204 -7.32760 -5.82046 -3.18331 2.58838 2.95173 3.29870 3.32332 3.35589 3.41262 3.51693 3.81409 4.01121 4.21156 4.34860 4.46961 4.53617 4.57497 4.76754 4.83699 4.92165 4.93758 4.94784 5.06174 5.07875 5.13675 5.22693 5.31506 5.37606 5.42366 5.45134 5.50664 5.54366 5.58790 5.69301 5.74977 5.81014 5.87209 5.92330 5.97721 6.11610 6.22243 6.36265 6.48382 6.48848 6.55317 6.60663 6.73473 6.87795 7.46948 7.95900 8.18266 8.37653 9.15368 9.87581 10.06860 11.36035 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.020101 B = 0.002048 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.661910 B =13671.824251 C =14289.796264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.123 4.123 13 C 0.131 3.869 14 N -0.724 5.724 15 C 0.516 3.484 16 O -0.542 6.542 17 C -0.105 4.105 18 H 0.104 0.896 19 C -0.114 4.114 20 C -0.114 4.114 21 C 0.033 3.967 22 N -0.532 5.532 23 C 0.011 3.989 24 C 0.220 3.780 25 F -0.203 7.203 26 F -0.195 7.195 27 C 0.065 3.935 28 C -0.166 4.166 29 H 0.260 0.740 30 H 0.362 0.638 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.110 0.890 47 H 0.086 0.914 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.931 -5.920 16.302 32.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.061 3.939 11 C -0.188 4.188 12 C -0.142 4.142 13 C 0.008 3.992 14 N -0.375 5.375 15 C 0.302 3.698 16 O -0.420 6.420 17 C -0.127 4.127 18 H 0.122 0.878 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.094 4.094 22 N -0.254 5.254 23 C -0.119 4.119 24 C 0.165 3.835 25 F -0.184 7.184 26 F -0.176 7.176 27 C -0.062 4.062 28 C -0.207 4.207 29 H 0.070 0.930 30 H 0.195 0.805 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.127 0.873 45 H 0.123 0.877 46 H 0.127 0.873 47 H 0.104 0.896 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 28.108 -6.043 15.798 32.805 hybrid contribution 0.228 0.680 0.253 0.761 sum 28.336 -5.362 16.051 33.005 Atomic orbital electron populations 1.69699 1.05089 1.25896 1.57230 1.24687 0.95262 0.97228 1.01914 0.86555 0.79121 0.84997 0.77840 1.21016 1.21676 1.20404 1.19112 0.80410 0.94841 1.43256 0.89030 1.42514 1.03947 1.01611 1.88913 1.20999 0.90109 0.89883 0.92924 1.23461 0.98757 1.01588 0.95030 1.22751 0.92718 1.00024 0.98698 1.21458 0.95610 0.98821 0.83338 1.46066 1.23089 1.47329 1.21006 1.20499 0.80872 0.81155 0.87302 1.90708 1.54449 1.34136 1.62669 1.21354 0.96451 1.02619 0.92245 0.87835 1.21594 0.97506 1.01990 0.94128 1.21562 0.95699 1.01392 0.96506 1.22530 0.92412 1.00071 0.94387 1.61991 1.01190 1.59176 1.03081 1.23430 0.94061 0.89799 1.04593 1.22917 0.90051 0.95736 0.74835 1.92912 1.61562 1.83061 1.80868 1.93038 1.96593 1.96209 1.31786 1.22254 0.95701 0.98828 0.89447 1.23851 0.96505 0.98808 1.01524 0.92978 0.80530 0.91085 0.91450 0.90002 0.89262 0.91849 0.91481 0.76435 0.91485 0.90814 0.90833 0.90804 0.90606 0.92225 0.87345 0.87664 0.87312 0.89584 0.92134 0.90968 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.90 13.97 55.49 0.78 -28.13 16 2 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.67 27.74 -169.99 -4.71 16.95 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.33 6.52 56.52 0.37 -5.97 16 7 C -0.25 -6.82 10.45 -15.06 -0.16 -6.98 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.73 -16.72 5.12 -52.64 -0.27 -16.99 16 10 C 0.17 3.18 4.56 -67.12 -0.31 2.88 16 11 C -0.15 -2.21 7.39 -25.92 -0.19 -2.40 16 12 C -0.12 -1.70 3.63 -89.81 -0.33 -2.03 16 13 C 0.13 1.67 5.51 -4.04 -0.02 1.65 16 14 N -0.72 -8.39 5.46 -60.29 -0.33 -8.72 16 15 C 0.52 6.54 7.16 -10.98 -0.08 6.46 16 16 O -0.54 -8.92 15.99 5.55 0.09 -8.83 16 17 C -0.10 -1.03 2.70 -91.62 -0.25 -1.27 16 18 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 19 C -0.11 -0.97 5.16 -26.61 -0.14 -1.11 16 20 C -0.11 -0.81 6.09 -26.65 -0.16 -0.97 16 21 C 0.03 0.24 5.03 -3.83 -0.02 0.22 16 22 N -0.53 -4.12 4.86 -234.58 -1.14 -5.26 16 23 C 0.01 0.06 6.01 -3.82 -0.02 0.03 16 24 C 0.22 1.39 5.14 37.16 0.19 1.58 16 25 F -0.20 -1.74 13.88 2.25 0.03 -1.71 16 26 F -0.19 -1.93 13.93 2.25 0.03 -1.90 16 27 C 0.07 0.66 2.53 -3.77 -0.01 0.65 16 28 C -0.17 -2.60 7.43 -25.91 -0.19 -2.79 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.36 8.12 5.76 -40.82 -0.24 7.88 16 31 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.07 8.10 -51.93 -0.42 0.64 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 37 H 0.40 3.96 7.94 -40.82 -0.32 3.64 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.57 7.64 -51.93 -0.40 0.18 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.44 7.95 -51.92 -0.41 0.03 16 43 H 0.06 0.50 5.57 -51.93 -0.29 0.21 16 44 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.11 0.32 7.85 -51.93 -0.41 -0.09 16 46 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 0.96 7.75 -51.93 -0.40 0.56 16 48 H 0.06 0.74 5.65 -51.93 -0.29 0.45 16 49 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 50 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 391.81 15.07 5.90 5.90 Total: -1.00 -33.81 391.81 -9.64 -43.45 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -8.24 Total: 9.26 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.78 Total: -4.02 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.96 Total: -59.10 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.06 Total: -3.61 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.81 -9.64 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091206206.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.411 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds