Wall clock time and date at job start Sat Apr 11 2020 07:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99797 * 2 1 4 4 H 1.48498 * 109.47190 * 270.00152 * 3 2 1 5 5 H 1.48504 * 109.46727 * 30.00064 * 3 2 1 6 6 H 1.48492 * 109.46968 * 149.99937 * 3 2 1 7 7 C 1.38810 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99883 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99960 * 180.02562 * 7 2 1 10 10 C 1.46508 * 119.99814 * 179.97438 * 9 7 2 11 11 C 1.53781 * 113.61310 * 155.00069 * 10 9 7 12 12 C 1.53783 * 87.08124 * 89.11583 * 11 10 9 13 13 C 1.53002 * 113.61262 * 139.97843 * 12 11 10 14 14 N 1.46502 * 109.47029 * 176.52759 * 13 12 11 15 15 C 1.34772 * 120.00435 * 179.97438 * 14 13 12 16 16 O 1.21521 * 119.99645 * 0.02562 * 15 14 13 17 17 C 1.48123 * 120.00528 * 179.97438 * 15 14 13 18 18 C 1.39247 * 120.04830 * 180.02562 * 17 15 14 19 19 N 1.32199 * 120.06554 * 180.02562 * 18 17 15 20 20 C 1.31933 * 120.16398 * 359.97438 * 19 18 17 21 21 C 1.39666 * 120.09231 * 0.02562 * 20 19 18 22 22 N 1.38980 * 120.02626 * 179.97438 * 21 20 19 23 23 C 1.48534 * 110.99536 * 176.52892 * 22 21 20 24 24 C 1.54933 * 103.22534 * 159.72146 * 23 22 21 25 25 C 1.54593 * 102.92568 * 322.58948 * 24 23 22 26 26 C 1.47893 * 111.00451 * 293.92598 * 22 21 20 27 27 N 1.32339 * 119.93451 * 359.70634 * 21 20 19 28 28 C 1.53787 * 87.17208 * 25.39083 * 12 11 10 29 29 H 0.97004 * 120.00362 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00192 * 359.97438 * 9 7 2 31 31 H 1.08995 * 112.85044 * 23.80042 * 10 9 7 32 32 H 1.08994 * 113.61214 * 334.56994 * 11 10 9 33 33 H 1.09000 * 113.61175 * 203.66126 * 11 10 9 34 34 H 1.08997 * 113.61362 * 270.79907 * 12 11 10 35 35 H 1.08998 * 109.47168 * 56.53191 * 13 12 11 36 36 H 1.08995 * 109.47471 * 296.52810 * 13 12 11 37 37 H 0.97008 * 119.99634 * 0.02562 * 14 13 12 38 38 H 1.07994 * 119.96979 * 0.02562 * 18 17 15 39 39 H 1.08001 * 119.94948 * 180.02562 * 20 19 18 40 40 H 1.08998 * 110.67100 * 278.15860 * 23 22 21 41 41 H 1.09011 * 110.66621 * 41.29226 * 23 22 21 42 42 H 1.09002 * 110.72743 * 204.22992 * 24 23 22 43 43 H 1.09003 * 110.72439 * 80.95050 * 24 23 22 44 44 H 1.09000 * 110.30993 * 263.04299 * 25 24 23 45 45 H 1.08994 * 110.31399 * 140.86821 * 25 24 23 46 46 H 1.08998 * 109.91986 * 333.51591 * 26 22 21 47 47 H 1.09007 * 109.91690 * 94.80388 * 26 22 21 48 48 H 1.08998 * 113.61650 * 89.16147 * 28 12 11 49 49 H 1.09007 * 113.60804 * 220.06163 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.5264 -2.3655 -0.5949 12 6 6.0124 -2.0235 0.8234 13 6 7.3466 -2.6775 1.1884 14 7 7.7633 -2.2275 2.5188 15 6 8.9169 -2.6767 3.0516 16 8 9.6116 -3.4548 2.4282 17 6 9.3384 -2.2213 4.3966 18 6 10.5304 -2.6845 4.9477 19 7 10.9067 -2.2786 6.1482 20 6 10.1555 -1.4336 6.8281 21 6 8.9587 -0.9647 6.2817 22 7 8.1681 -0.0750 6.9993 23 6 6.9915 0.3547 6.2009 24 6 6.0025 0.8702 7.2764 25 6 6.2191 -0.1166 8.4466 26 6 7.6189 -0.7148 8.2143 27 7 8.5809 -1.3644 5.0780 28 6 4.7867 -2.7912 1.3463 29 1 -0.4851 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0004 31 1 3.5282 -3.2967 -0.4058 32 1 5.6414 -1.5467 -1.3051 33 1 5.9128 -3.3122 -0.9725 34 1 5.9883 -0.9572 1.0480 35 1 8.1025 -2.3943 0.4559 36 1 7.2314 -3.7614 1.1910 37 1 7.2085 -1.6067 3.0166 38 1 11.1480 -3.3759 4.3939 39 1 10.4665 -1.1040 7.8084 40 1 7.2645 1.1557 5.5139 41 1 6.5650 -0.4896 5.6592 42 1 4.9762 0.8183 6.9131 43 1 6.2554 1.8869 7.5773 44 1 5.4636 -0.9019 8.4240 45 1 6.1872 0.4129 9.3988 46 1 7.5424 -1.7917 8.0647 47 1 8.2607 -0.5008 9.0691 48 1 4.9706 -3.8545 1.5005 49 1 4.3056 -2.3155 2.2010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091267842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:17 Heat of formation + Delta-G solvation = 64.358936 kcal Electronic energy + Delta-G solvation = -29879.057983 eV Core-core repulsion = 25842.606246 eV Total energy + Delta-G solvation = -4036.451737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.90036 -39.93954 -39.09249 -38.53536 -35.14526 -34.61056 -33.41009 -33.11240 -30.72911 -29.88254 -29.51733 -27.95800 -25.65618 -25.22308 -24.57293 -23.45627 -22.09376 -21.67256 -21.45989 -20.79463 -18.93071 -18.20090 -18.15658 -17.67814 -17.16955 -16.74067 -16.60880 -15.97701 -15.78793 -15.15522 -14.82767 -14.49466 -14.41683 -14.27346 -13.78027 -13.64741 -13.57411 -13.25657 -13.04811 -12.88000 -12.82231 -12.56020 -12.17199 -12.10580 -11.87434 -11.69269 -11.61888 -11.50170 -11.41690 -10.99179 -10.96161 -10.74806 -10.55640 -10.34806 -10.26389 -10.10682 -9.74647 -9.64107 -9.50531 -9.19812 -8.96096 -8.83934 -7.35182 -5.84185 -3.20547 -0.01387 0.56973 2.39525 2.76228 2.95289 3.30507 3.33875 3.35669 3.39548 3.61654 3.83828 3.99174 4.14026 4.30040 4.48833 4.51624 4.63714 4.72755 4.84254 4.86497 4.88110 4.90792 5.01508 5.03691 5.18309 5.34511 5.37074 5.37570 5.41693 5.44517 5.53673 5.60481 5.64768 5.69373 5.74723 5.78329 5.84574 6.00033 6.07178 6.17547 6.21167 6.42042 6.43225 6.57199 6.67349 6.74650 6.84338 7.14172 7.36458 7.90110 7.93599 8.35444 9.13150 9.85369 10.04530 11.33898 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009430 B = 0.002970 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.687835 B = 9424.906229 C =11768.417865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.173 3.827 11 C -0.148 4.148 12 C -0.124 4.124 13 C 0.129 3.871 14 N -0.701 5.701 15 C 0.571 3.429 16 O -0.530 6.530 17 C 0.059 3.941 18 C 0.079 3.921 19 N -0.422 5.422 20 C 0.074 3.926 21 C 0.256 3.744 22 N -0.456 5.456 23 C 0.040 3.960 24 C -0.128 4.128 25 C -0.131 4.131 26 C 0.042 3.958 27 N -0.450 5.450 28 C -0.167 4.167 29 H 0.260 0.740 30 H 0.362 0.638 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.411 0.589 38 H 0.183 0.817 39 H 0.176 0.824 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.054 0.946 47 H 0.092 0.908 48 H 0.072 0.928 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.623 -2.060 16.751 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.061 3.939 11 C -0.187 4.187 12 C -0.143 4.143 13 C 0.006 3.994 14 N -0.351 5.351 15 C 0.354 3.646 16 O -0.407 6.407 17 C -0.082 4.082 18 C -0.080 4.080 19 N -0.135 5.135 20 C -0.092 4.092 21 C 0.019 3.981 22 N -0.176 5.176 23 C -0.086 4.086 24 C -0.166 4.166 25 C -0.169 4.169 26 C -0.083 4.083 27 N -0.172 5.172 28 C -0.208 4.208 29 H 0.070 0.930 30 H 0.195 0.805 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.247 0.753 38 H 0.200 0.800 39 H 0.193 0.807 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.073 0.927 47 H 0.110 0.890 48 H 0.091 0.909 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 20.132 -2.235 16.371 26.044 hybrid contribution -0.060 1.132 0.141 1.142 sum 20.072 -1.104 16.512 26.014 Atomic orbital electron populations 1.69694 1.05101 1.25916 1.57179 1.24677 0.95239 0.97200 1.01864 0.86573 0.79143 0.85032 0.77884 1.20988 1.21646 1.20393 1.19110 0.80400 0.94845 1.43338 0.89021 1.42520 1.03964 1.01614 1.88889 1.21035 0.90095 0.89918 0.92816 1.23459 0.98746 1.01652 0.94875 1.22766 0.92514 1.00163 0.98847 1.21591 0.96197 0.99385 0.82253 1.45928 1.22208 1.47394 1.19560 1.17652 0.81800 0.81209 0.83914 1.90809 1.53905 1.34853 1.61107 1.22090 0.94165 0.95814 0.96180 1.23677 0.94493 0.98108 0.91677 1.68570 1.30210 1.08537 1.06151 1.23637 0.90312 0.94016 1.01245 1.21055 0.94771 0.91334 0.90971 1.62114 1.19369 1.29887 1.06199 1.23271 0.88349 1.01168 0.95844 1.22562 0.99783 0.99550 0.94680 1.22426 0.95303 0.99319 0.99817 1.22998 0.96442 0.97312 0.91580 1.68291 1.31188 1.09873 1.07852 1.23892 0.96478 0.98796 1.01602 0.92959 0.80520 0.90995 0.91342 0.89898 0.89158 0.91321 0.90952 0.75303 0.79969 0.80651 0.89186 0.90658 0.89897 0.90395 0.90714 0.90237 0.92710 0.89016 0.90941 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.97 55.49 0.78 -27.89 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.47 27.74 -169.99 -4.71 16.75 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 7 C -0.25 -6.77 10.45 -15.06 -0.16 -6.92 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.73 -16.50 5.11 -52.55 -0.27 -16.77 16 10 C 0.17 3.13 4.57 -67.02 -0.31 2.82 16 11 C -0.15 -2.12 7.39 -25.92 -0.19 -2.31 16 12 C -0.12 -1.68 3.62 -89.80 -0.33 -2.01 16 13 C 0.13 1.58 5.50 -4.04 -0.02 1.55 16 14 N -0.70 -8.49 5.55 -61.16 -0.34 -8.83 16 15 C 0.57 7.39 7.81 -12.20 -0.10 7.30 16 16 O -0.53 -8.04 16.34 5.35 0.09 -7.95 16 17 C 0.06 0.69 6.75 -82.87 -0.56 0.13 16 18 C 0.08 0.84 10.76 -17.02 -0.18 0.66 16 19 N -0.42 -4.30 10.48 -12.54 -0.13 -4.43 16 20 C 0.07 0.64 10.72 -16.98 -0.18 0.46 16 21 C 0.26 2.48 6.00 -154.89 -0.93 1.55 16 22 N -0.46 -3.83 5.29 -169.09 -0.90 -4.73 16 23 C 0.04 0.35 6.01 -1.90 -0.01 0.34 16 24 C -0.13 -0.90 7.06 -24.87 -0.18 -1.08 16 25 C -0.13 -0.77 6.93 -25.38 -0.18 -0.95 16 26 C 0.04 0.27 6.30 -2.76 -0.02 0.25 16 27 N -0.45 -4.95 7.81 -8.81 -0.07 -5.02 16 28 C -0.17 -2.56 7.44 -25.82 -0.19 -2.75 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.36 8.03 5.76 -40.82 -0.24 7.80 16 31 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 37 H 0.41 4.76 7.82 -40.82 -0.32 4.44 16 38 H 0.18 1.74 7.63 -52.49 -0.40 1.34 16 39 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.75 7.16 -51.92 -0.37 0.38 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.05 0.37 7.75 -51.93 -0.40 -0.03 16 47 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 48 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 49 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 LS Contribution 399.79 15.07 6.02 6.02 Total: -1.00 -32.14 399.79 -10.78 -42.92 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.63 Total: 10.80 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -3.62 Total: -0.88 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -0.93 Total: -67.66 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.09 Total: -7.95 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.75 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.14 -10.78 -42.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091267842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.282 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds