Wall clock time and date at job start Sat Apr 11 2020 07:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99797 * 2 1 4 4 H 1.48498 * 109.47190 * 270.00152 * 3 2 1 5 5 H 1.48504 * 109.46727 * 30.00064 * 3 2 1 6 6 H 1.48492 * 109.46968 * 149.99937 * 3 2 1 7 7 C 1.38810 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99883 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99960 * 180.02562 * 7 2 1 10 10 C 1.46508 * 119.99814 * 179.97438 * 9 7 2 11 11 C 1.53781 * 113.61310 * 155.00069 * 10 9 7 12 12 C 1.53783 * 87.08124 * 89.11583 * 11 10 9 13 13 C 1.53002 * 113.61262 * 139.97843 * 12 11 10 14 14 N 1.46502 * 109.47029 * 176.52759 * 13 12 11 15 15 C 1.34772 * 120.00435 * 179.97438 * 14 13 12 16 16 O 1.21521 * 119.99645 * 0.02562 * 15 14 13 17 17 C 1.48123 * 120.00528 * 179.97438 * 15 14 13 18 18 C 1.39247 * 120.04830 * 180.02562 * 17 15 14 19 19 N 1.32199 * 120.06554 * 180.02562 * 18 17 15 20 20 C 1.31933 * 120.16398 * 359.97438 * 19 18 17 21 21 C 1.39666 * 120.09231 * 0.02562 * 20 19 18 22 22 N 1.38980 * 120.02626 * 179.97438 * 21 20 19 23 23 C 1.48534 * 110.99536 * 176.52892 * 22 21 20 24 24 C 1.54933 * 103.22534 * 159.72146 * 23 22 21 25 25 C 1.54593 * 102.92568 * 322.58948 * 24 23 22 26 26 C 1.47893 * 111.00451 * 293.92598 * 22 21 20 27 27 N 1.32339 * 119.93451 * 359.70634 * 21 20 19 28 28 C 1.53787 * 87.17208 * 25.39083 * 12 11 10 29 29 H 0.97004 * 120.00362 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00192 * 359.97438 * 9 7 2 31 31 H 1.08995 * 112.85044 * 23.80042 * 10 9 7 32 32 H 1.08994 * 113.61214 * 334.56994 * 11 10 9 33 33 H 1.09000 * 113.61175 * 203.66126 * 11 10 9 34 34 H 1.08997 * 113.61362 * 270.79907 * 12 11 10 35 35 H 1.08998 * 109.47168 * 56.53191 * 13 12 11 36 36 H 1.08995 * 109.47471 * 296.52810 * 13 12 11 37 37 H 0.97008 * 119.99634 * 0.02562 * 14 13 12 38 38 H 1.07994 * 119.96979 * 0.02562 * 18 17 15 39 39 H 1.08001 * 119.94948 * 180.02562 * 20 19 18 40 40 H 1.08998 * 110.67100 * 278.15860 * 23 22 21 41 41 H 1.09011 * 110.66621 * 41.29226 * 23 22 21 42 42 H 1.09002 * 110.72743 * 204.22992 * 24 23 22 43 43 H 1.09003 * 110.72439 * 80.95050 * 24 23 22 44 44 H 1.09000 * 110.30993 * 263.04299 * 25 24 23 45 45 H 1.08994 * 110.31399 * 140.86821 * 25 24 23 46 46 H 1.08998 * 109.91986 * 333.51591 * 26 22 21 47 47 H 1.09007 * 109.91690 * 94.80388 * 26 22 21 48 48 H 1.08998 * 113.61650 * 89.16147 * 28 12 11 49 49 H 1.09007 * 113.60804 * 220.06163 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.5264 -2.3655 -0.5949 12 6 6.0124 -2.0235 0.8234 13 6 7.3466 -2.6775 1.1884 14 7 7.7633 -2.2275 2.5188 15 6 8.9169 -2.6767 3.0516 16 8 9.6116 -3.4548 2.4282 17 6 9.3384 -2.2213 4.3966 18 6 10.5304 -2.6845 4.9477 19 7 10.9067 -2.2786 6.1482 20 6 10.1555 -1.4336 6.8281 21 6 8.9587 -0.9647 6.2817 22 7 8.1681 -0.0750 6.9993 23 6 6.9915 0.3547 6.2009 24 6 6.0025 0.8702 7.2764 25 6 6.2191 -0.1166 8.4466 26 6 7.6189 -0.7148 8.2143 27 7 8.5809 -1.3644 5.0780 28 6 4.7867 -2.7912 1.3463 29 1 -0.4851 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0004 31 1 3.5282 -3.2967 -0.4058 32 1 5.6414 -1.5467 -1.3051 33 1 5.9128 -3.3122 -0.9725 34 1 5.9883 -0.9572 1.0480 35 1 8.1025 -2.3943 0.4559 36 1 7.2314 -3.7614 1.1910 37 1 7.2085 -1.6067 3.0166 38 1 11.1480 -3.3759 4.3939 39 1 10.4665 -1.1040 7.8084 40 1 7.2645 1.1557 5.5139 41 1 6.5650 -0.4896 5.6592 42 1 4.9762 0.8183 6.9131 43 1 6.2554 1.8869 7.5773 44 1 5.4636 -0.9019 8.4240 45 1 6.1872 0.4129 9.3988 46 1 7.5424 -1.7917 8.0647 47 1 8.2607 -0.5008 9.0691 48 1 4.9706 -3.8545 1.5005 49 1 4.3056 -2.3155 2.2010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091267842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:17 Heat of formation + Delta-G solvation = 41.676420 kcal Electronic energy + Delta-G solvation = -29880.041571 eV Core-core repulsion = 25842.606246 eV Total energy + Delta-G solvation = -4037.435325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.65949 -40.92655 -40.06169 -39.51547 -36.24296 -35.62261 -34.92609 -33.95747 -32.64816 -30.59459 -30.09976 -29.12236 -26.57611 -26.46324 -25.52266 -25.04331 -23.27318 -22.54529 -22.14121 -21.57961 -20.27825 -19.60072 -19.19631 -18.89587 -17.88814 -17.49634 -17.29158 -17.00220 -16.70190 -16.64605 -16.14524 -15.71761 -15.54251 -15.08627 -14.95395 -14.79673 -14.62546 -14.42166 -14.11144 -13.92278 -13.62255 -13.49848 -13.39393 -13.12947 -13.04064 -12.90491 -12.72178 -12.46272 -12.30954 -12.20579 -12.12104 -11.91218 -11.82598 -11.64308 -11.51037 -11.42621 -11.04479 -11.00761 -10.87962 -10.35909 -10.19752 -9.54073 -9.30511 -8.03395 -5.36998 -0.79935 -0.18965 1.36481 1.40389 1.47311 1.49752 1.85512 2.23094 2.47124 2.55010 2.84890 3.10743 3.26908 3.28248 3.50185 3.55106 3.67397 3.71514 3.77767 3.92088 3.96128 3.97871 4.05288 4.24256 4.25524 4.28784 4.34484 4.49683 4.62458 4.66922 4.71308 4.82356 4.85077 4.91525 4.95034 4.96033 4.98173 5.06361 5.11031 5.15374 5.18355 5.29102 5.40005 5.43315 5.52405 5.73123 5.80006 6.00483 6.22023 6.26405 6.52161 6.92969 7.07143 7.84042 8.02398 9.18153 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009430 B = 0.002970 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.687835 B = 9424.906229 C =11768.417865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.954 3.046 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.250 1.250 7 C -0.232 4.232 8 H 0.057 0.943 9 N -0.734 5.734 10 C 0.146 3.854 11 C -0.130 4.130 12 C -0.107 4.107 13 C 0.136 3.864 14 N -0.698 5.698 15 C 0.573 3.427 16 O -0.557 6.557 17 C 0.043 3.957 18 C 0.078 3.922 19 N -0.432 5.432 20 C 0.087 3.913 21 C 0.250 3.750 22 N -0.454 5.454 23 C 0.038 3.962 24 C -0.126 4.126 25 C -0.127 4.127 26 C 0.041 3.959 27 N -0.460 5.460 28 C -0.156 4.156 29 H 0.258 0.742 30 H 0.366 0.634 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.414 0.586 38 H 0.188 0.812 39 H 0.208 0.792 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.049 0.951 47 H 0.116 0.884 48 H 0.092 0.908 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.283 -1.375 18.290 28.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.781 3.219 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.175 1.175 7 C -0.363 4.363 8 H 0.075 0.925 9 N -0.376 5.376 10 C 0.037 3.963 11 C -0.170 4.170 12 C -0.126 4.126 13 C 0.013 3.987 14 N -0.347 5.347 15 C 0.357 3.643 16 O -0.435 6.435 17 C -0.098 4.098 18 C -0.080 4.080 19 N -0.145 5.145 20 C -0.079 4.079 21 C 0.012 3.988 22 N -0.174 5.174 23 C -0.089 4.089 24 C -0.164 4.164 25 C -0.165 4.165 26 C -0.084 4.084 27 N -0.183 5.183 28 C -0.196 4.196 29 H 0.067 0.933 30 H 0.200 0.800 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.250 0.750 38 H 0.205 0.795 39 H 0.225 0.775 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.115 0.885 46 H 0.068 0.932 47 H 0.134 0.866 48 H 0.110 0.890 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 22.847 -1.594 17.906 29.071 hybrid contribution -0.917 0.824 -0.271 1.262 sum 21.930 -0.770 17.635 28.151 Atomic orbital electron populations 1.69880 1.07174 1.26706 1.59675 1.25497 0.96092 1.01234 1.02681 0.85429 0.78688 0.79669 0.78099 1.20555 1.22259 1.17479 1.19065 0.82586 0.93466 1.41195 0.92512 1.42449 1.02280 1.03526 1.89300 1.21377 0.91658 0.87829 0.95474 1.23354 0.95221 1.03170 0.95212 1.22582 0.92416 0.99698 0.97904 1.21490 0.95376 0.99362 0.82486 1.45900 1.22096 1.47239 1.19505 1.17814 0.81517 0.80692 0.84283 1.90787 1.54661 1.36095 1.61967 1.21888 0.94917 0.97034 0.95936 1.23769 0.94237 0.98064 0.91960 1.68641 1.30580 1.09189 1.06058 1.24145 0.89351 0.92509 1.01944 1.21343 0.95393 0.91390 0.90719 1.62192 1.19105 1.29599 1.06486 1.23232 0.88992 1.00371 0.96319 1.22551 0.99031 1.00182 0.94630 1.22440 0.95004 0.99045 1.00048 1.23139 0.97095 0.96894 0.91309 1.68243 1.31408 1.10037 1.08618 1.23749 0.96633 1.00174 0.99037 0.93318 0.80023 0.92252 0.91284 0.87172 0.89601 0.90711 0.90614 0.74995 0.79477 0.77513 0.90080 0.92165 0.90313 0.89781 0.90916 0.88480 0.93242 0.86596 0.88998 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.48 13.97 21.65 0.30 -62.18 16 2 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.95 44.46 27.74 68.60 1.90 46.36 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.25 -10.38 6.52 99.48 0.65 -9.73 16 7 C -0.23 -12.99 10.45 84.03 0.88 -12.11 16 8 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 9 N -0.73 -32.88 5.11 -320.16 -1.64 -34.52 16 10 C 0.15 5.16 4.57 45.58 0.21 5.37 16 11 C -0.13 -3.42 7.39 31.12 0.23 -3.19 16 12 C -0.11 -2.67 3.62 -10.26 -0.04 -2.71 16 13 C 0.14 3.02 5.50 86.38 0.47 3.50 16 14 N -0.70 -15.97 5.55 -465.71 -2.58 -18.55 16 15 C 0.57 14.32 7.81 86.87 0.68 15.00 16 16 O -0.56 -16.42 16.34 -3.78 -0.06 -16.48 16 17 C 0.04 0.96 6.75 41.82 0.28 1.24 16 18 C 0.08 1.58 10.76 84.88 0.91 2.49 16 19 N -0.43 -8.04 10.48 -193.59 -2.03 -10.07 16 20 C 0.09 1.31 10.72 85.02 0.91 2.22 16 21 C 0.25 4.41 6.00 133.22 0.80 5.21 16 22 N -0.45 -6.75 5.29 -688.89 -3.65 -10.40 16 23 C 0.04 0.63 6.01 86.65 0.52 1.15 16 24 C -0.13 -1.60 7.06 31.80 0.22 -1.38 16 25 C -0.13 -1.22 6.93 31.47 0.22 -1.00 16 26 C 0.04 0.41 6.30 86.45 0.54 0.96 16 27 N -0.46 -9.70 7.81 -181.80 -1.42 -11.12 16 28 C -0.16 -4.57 7.44 31.18 0.23 -4.34 16 29 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 30 H 0.37 15.67 5.76 -92.71 -0.53 15.13 16 31 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.11 2.34 8.10 -2.39 -0.02 2.32 16 34 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.69 7.87 -2.39 -0.02 1.67 16 37 H 0.41 9.13 7.82 -92.70 -0.73 8.40 16 38 H 0.19 3.46 7.63 -2.91 -0.02 3.44 16 39 H 0.21 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.06 1.18 7.16 -2.38 -0.02 1.16 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.05 0.57 7.75 -2.39 -0.02 0.55 16 47 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 48 H 0.09 2.36 7.92 -2.39 -0.02 2.34 16 49 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -71.03 399.79 -1.97 -73.00 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: -0.34 Total: 34.78 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 7.55 Total: 9.18 kcal Atomic # 7 Polarization: -135.83 SS G_CDS: -11.01 Total: -146.84 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.06 Total: -16.48 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.90 Total: 46.36 kcal Total: -71.03 -1.97 -73.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091267842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.673 kcal (2) G-P(sol) polarization free energy of solvation -71.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds