Wall clock time and date at job start Sat Apr 11 2020 07:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48500 * 109.47299 * 89.99565 * 3 2 1 5 5 H 1.48498 * 109.47147 * 209.99892 * 3 2 1 6 6 H 1.48501 * 109.47028 * 329.99646 * 3 2 1 7 7 C 1.38819 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99911 * 14.86616 * 7 2 1 9 9 N 1.36933 * 120.00047 * 194.87128 * 7 2 1 10 10 C 1.47064 * 136.05915 * 8.05124 * 9 7 2 11 11 C 1.53753 * 87.89052 * 152.96595 * 10 9 7 12 12 N 1.46503 * 114.08784 * 139.77556 * 11 10 9 13 13 C 1.35314 * 125.86735 * 351.57557 * 12 11 10 14 14 C 1.35345 * 106.17449 * 179.97438 * 13 12 11 15 15 C 1.50702 * 126.75298 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47526 * 94.99001 * 15 14 13 17 17 C 1.34776 * 119.99749 * 180.02562 * 16 15 14 18 18 O 1.21282 * 120.00401 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99729 * 180.02562 * 17 16 15 20 20 H 1.09008 * 110.05531 * 334.60064 * 19 17 16 21 21 C 1.54389 * 110.07131 * 213.05361 * 19 17 16 22 22 C 1.54928 * 104.22113 * 217.20484 * 21 19 17 23 23 C 1.54989 * 102.82017 * 37.72459 * 22 21 19 24 24 C 1.53483 * 110.07061 * 96.08326 * 19 17 16 25 25 C 1.52548 * 121.08624 * 335.17328 * 24 19 17 26 26 C 1.52571 * 121.05607 * 263.45697 * 24 19 17 27 27 N 1.33772 * 106.49900 * 359.97438 * 14 13 12 28 28 N 1.28636 * 108.88468 * 359.73874 * 27 14 13 29 29 C 1.47069 * 136.05687 * 188.43237 * 9 7 2 30 30 H 0.97003 * 120.00400 * 174.90748 * 1 2 3 31 31 H 1.09003 * 113.47183 * 267.70384 * 10 9 7 32 32 H 1.09005 * 113.46295 * 38.14475 * 10 9 7 33 33 H 1.08995 * 114.57656 * 272.66889 * 11 10 9 34 34 H 1.07997 * 126.91209 * 359.96489 * 13 12 11 35 35 H 1.09001 * 109.46803 * 214.99891 * 15 14 13 36 36 H 1.08999 * 109.46706 * 334.98916 * 15 14 13 37 37 H 0.97000 * 120.00172 * 0.02562 * 16 15 14 38 38 H 1.09002 * 110.47725 * 335.88364 * 21 19 17 39 39 H 1.08998 * 110.48120 * 98.51797 * 21 19 17 40 40 H 1.09010 * 110.73718 * 279.39623 * 22 21 19 41 41 H 1.08996 * 110.89946 * 156.13665 * 22 21 19 42 42 H 1.09004 * 110.50615 * 203.78770 * 23 22 21 43 43 H 1.08998 * 110.62859 * 81.13588 * 23 22 21 44 44 H 1.08999 * 117.51242 * 357.02678 * 25 24 19 45 45 H 1.09007 * 117.50974 * 142.10845 * 25 24 19 46 46 H 1.08998 * 117.51177 * 217.93215 * 26 24 19 47 47 H 1.08994 * 117.51291 * 3.02273 * 26 24 19 48 48 H 1.09005 * 113.46552 * 321.85675 * 29 9 7 49 49 H 1.08996 * 113.46979 * 92.24129 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4400 -0.7000 6 1 1.4477 2.6526 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4973 -2.1219 -0.2390 9 7 3.3451 -1.2220 0.3049 10 6 4.3311 -0.2535 0.8076 11 6 5.1115 -1.4399 1.3970 12 7 6.5654 -1.3295 1.2540 13 6 7.2221 -0.3920 0.5323 14 6 8.5407 -0.6607 0.6763 15 6 9.6883 0.1011 0.0648 16 7 10.1839 1.0909 1.0244 17 6 11.2146 1.8935 0.6929 18 8 11.7316 1.7967 -0.3999 19 6 11.7249 2.9113 1.6803 20 1 10.9333 3.1847 2.3780 21 6 12.2320 4.1647 0.9349 22 6 13.4740 4.6128 1.7453 23 6 14.1259 3.2658 2.1487 24 6 12.9290 2.3453 2.4454 25 6 13.1217 0.8410 2.6093 26 6 12.7580 1.7050 3.8196 27 7 8.6252 -1.7349 1.4691 28 7 7.4377 -2.1034 1.7989 29 6 4.4254 -2.2192 0.2665 30 1 -0.4851 -0.8367 -0.0746 31 1 4.8684 0.2695 0.0165 32 1 3.9296 0.4221 1.5631 33 1 4.7983 -1.7360 2.3981 34 1 6.7824 0.4093 -0.0431 35 1 10.4902 -0.5921 -0.1892 36 1 9.3475 0.6088 -0.8375 37 1 9.7703 1.1686 1.8984 38 1 12.5142 3.9123 -0.0872 39 1 11.4712 4.9452 0.9400 40 1 13.1754 5.1772 2.6288 41 1 14.1519 5.1994 1.1252 42 1 14.7414 3.3911 3.0395 43 1 14.7209 2.8660 1.3276 44 1 12.3480 0.1874 2.2065 45 1 14.1396 0.4548 2.5540 46 1 13.5366 1.8871 4.5603 47 1 11.7451 1.6198 4.2129 48 1 4.1043 -3.2185 0.5609 49 1 4.9869 -2.2152 -0.6677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094298544.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:56 Heat of formation + Delta-G solvation = 145.647328 kcal Electronic energy + Delta-G solvation = -29797.721021 eV Core-core repulsion = 25764.794213 eV Total energy + Delta-G solvation = -4032.926808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.30484 -40.72973 -39.00975 -38.32019 -35.45591 -34.39435 -33.62693 -32.34490 -31.58016 -29.75828 -28.33658 -26.98185 -25.95395 -25.65460 -24.29468 -22.82269 -21.94893 -21.71978 -21.17877 -20.75264 -19.95280 -19.24357 -17.87342 -17.53144 -17.17977 -16.46230 -16.21730 -15.97281 -15.50731 -15.28216 -15.17461 -14.88268 -14.48195 -14.09964 -13.90942 -13.61998 -13.46172 -13.32781 -12.94863 -12.82619 -12.49992 -12.46165 -12.35238 -11.95973 -11.81088 -11.75254 -11.53914 -11.42046 -11.23349 -10.95782 -10.94658 -10.89700 -10.66664 -10.58338 -10.43774 -10.05346 -9.80671 -9.72019 -9.48671 -9.29512 -9.25411 -9.03947 -7.57164 -6.58360 -3.55702 1.58387 2.24936 2.36694 2.42679 3.11470 3.17706 3.24597 3.39922 3.50749 3.99107 4.09597 4.22537 4.26171 4.33817 4.40255 4.47327 4.48754 4.65411 4.71417 4.87257 4.89467 4.90656 4.98245 5.04886 5.20616 5.24817 5.25062 5.33296 5.38747 5.40178 5.49208 5.54323 5.55369 5.64907 5.70754 5.72988 5.74045 5.80108 5.81159 5.83726 5.88387 5.95831 6.02202 6.03641 6.15445 6.18045 6.64633 6.72513 7.27522 7.97551 8.01662 8.52456 8.67701 9.17477 9.95937 10.90984 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.002251 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.305266 B =12438.164062 C =13432.049611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.016 4.016 3 Si 1.058 2.942 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.289 1.289 7 C -0.316 4.316 8 H 0.089 0.911 9 N -0.606 5.606 10 C 0.100 3.900 11 C 0.088 3.912 12 N -0.266 5.266 13 C -0.021 4.021 14 C -0.057 4.057 15 C 0.213 3.787 16 N -0.725 5.725 17 C 0.524 3.476 18 O -0.536 6.536 19 C -0.076 4.076 20 H 0.091 0.909 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.086 4.086 24 C -0.119 4.119 25 C -0.169 4.169 26 C -0.165 4.165 27 N -0.263 5.263 28 N -0.082 5.082 29 C 0.117 3.883 30 H 0.266 0.734 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.142 0.858 34 H 0.190 0.810 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.402 0.598 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.645 7.280 5.795 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.217 4.217 3 Si 0.888 3.112 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.216 1.216 7 C -0.441 4.441 8 H 0.107 0.893 9 N -0.334 5.334 10 C -0.027 4.027 11 C -0.015 4.015 12 N -0.059 5.059 13 C -0.174 4.174 14 C -0.196 4.196 15 C 0.088 3.912 16 N -0.377 5.377 17 C 0.311 3.689 18 O -0.412 6.412 19 C -0.098 4.098 20 H 0.109 0.891 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.206 4.206 26 C -0.201 4.201 27 N -0.130 5.130 28 N -0.061 5.061 29 C -0.011 4.011 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.160 0.840 34 H 0.207 0.793 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.236 0.764 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.083 0.917 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 25.676 7.569 5.891 27.409 hybrid contribution -0.585 -0.911 -0.383 1.148 sum 25.090 6.658 5.508 26.537 Atomic orbital electron populations 1.70890 1.05353 1.29998 1.49599 1.25864 0.96505 1.00973 0.98348 0.83833 0.74694 0.75961 0.76665 1.21713 1.20831 1.21554 1.20129 0.79202 0.96409 1.48407 0.89333 1.45912 1.03534 1.07641 1.76307 1.23127 0.89795 0.92892 0.96878 1.24744 0.70200 1.03174 1.03343 1.47708 1.09463 1.18657 1.30065 1.23494 0.92520 0.98721 1.02664 1.21748 0.93731 0.99005 1.05147 1.19292 0.92199 0.89118 0.90570 1.46160 1.35127 1.37362 1.19043 1.20481 0.78902 0.81449 0.88096 1.90687 1.57466 1.69895 1.23192 1.21425 0.97303 0.94859 0.96174 0.89051 1.22366 0.97591 0.94632 1.00346 1.22447 0.96829 0.96699 0.99774 1.21873 0.95247 0.94025 1.01225 1.21527 0.96091 0.95121 0.99217 1.23031 1.03267 0.92367 1.01940 1.23049 1.02980 1.03495 0.90618 1.75053 1.13992 1.11104 1.12814 1.78315 0.92470 1.16806 1.18524 1.22739 0.88800 0.95554 0.94009 0.92369 0.92471 0.91095 0.83997 0.79282 0.89715 0.89615 0.76417 0.89454 0.91094 0.91308 0.91086 0.91439 0.90871 0.88358 0.88506 0.88446 0.88631 0.91671 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.08 13.70 55.49 0.76 -26.32 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 1.06 23.90 25.51 -169.99 -4.34 19.56 16 4 H -0.29 -6.19 6.97 56.52 0.39 -5.80 16 5 H -0.28 -5.71 5.64 56.52 0.32 -5.39 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.32 -8.32 11.04 -15.06 -0.17 -8.49 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16 9 N -0.61 -13.24 3.62 -184.62 -0.67 -13.91 16 10 C 0.10 1.78 4.94 -8.38 -0.04 1.74 16 11 C 0.09 1.35 5.35 -67.67 -0.36 0.99 16 12 N -0.27 -3.90 3.56 -54.44 -0.19 -4.09 16 13 C -0.02 -0.26 10.71 -17.05 -0.18 -0.45 16 14 C -0.06 -0.73 6.62 -82.78 -0.55 -1.27 16 15 C 0.21 2.30 6.23 -5.19 -0.03 2.27 16 16 N -0.72 -7.01 5.28 -61.47 -0.32 -7.33 16 17 C 0.52 5.60 5.58 -10.99 -0.06 5.53 16 18 O -0.54 -7.58 15.78 5.56 0.09 -7.49 16 19 C -0.08 -0.63 3.16 -90.79 -0.29 -0.91 16 20 H 0.09 0.62 8.13 -51.92 -0.42 0.19 16 21 C -0.11 -0.88 6.33 -24.99 -0.16 -1.04 16 22 C -0.12 -0.77 6.91 -24.66 -0.17 -0.94 16 23 C -0.09 -0.61 6.58 -25.22 -0.17 -0.77 16 24 C -0.12 -0.93 2.26 -154.25 -0.35 -1.28 16 25 C -0.17 -1.43 9.63 -26.92 -0.26 -1.69 16 26 C -0.16 -1.15 10.24 -26.90 -0.28 -1.42 16 27 N -0.26 -3.99 12.41 33.29 0.41 -3.57 16 28 N -0.08 -1.31 13.17 60.35 0.79 -0.51 16 29 C 0.12 2.06 8.49 -8.51 -0.07 1.99 16 30 H 0.27 7.75 8.73 -40.82 -0.36 7.39 16 31 H 0.06 0.96 5.24 -51.93 -0.27 0.69 16 32 H 0.07 1.28 6.26 -51.93 -0.33 0.95 16 33 H 0.14 2.06 8.14 -51.93 -0.42 1.64 16 34 H 0.19 2.02 6.77 -52.49 -0.36 1.67 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.40 3.38 8.45 -40.82 -0.35 3.03 16 38 H 0.09 0.85 6.93 -51.93 -0.36 0.49 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.97 7.08 -51.93 -0.37 0.60 16 45 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -31.54 393.76 -8.37 -39.90 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.61 Total: 4.11 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -3.23 Total: -6.27 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.78 Total: -55.74 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.09 Total: -7.49 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -4.34 Total: 19.56 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.54 -8.37 -39.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094298544.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.550 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds