Wall clock time and date at job start Sat Apr 11 2020 07:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48500 * 109.47299 * 89.99565 * 3 2 1 5 5 H 1.48498 * 109.47147 * 209.99892 * 3 2 1 6 6 H 1.48501 * 109.47028 * 329.99646 * 3 2 1 7 7 C 1.38819 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99911 * 14.86616 * 7 2 1 9 9 N 1.36933 * 120.00047 * 194.87128 * 7 2 1 10 10 C 1.47064 * 136.05915 * 8.05124 * 9 7 2 11 11 C 1.53753 * 87.89052 * 152.96595 * 10 9 7 12 12 N 1.46503 * 114.08784 * 139.77556 * 11 10 9 13 13 C 1.35314 * 125.86735 * 351.57557 * 12 11 10 14 14 C 1.35345 * 106.17449 * 179.97438 * 13 12 11 15 15 C 1.50702 * 126.75298 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47526 * 94.99001 * 15 14 13 17 17 C 1.34776 * 119.99749 * 180.02562 * 16 15 14 18 18 O 1.21282 * 120.00401 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99729 * 180.02562 * 17 16 15 20 20 H 1.09008 * 110.05531 * 334.60064 * 19 17 16 21 21 C 1.54389 * 110.07131 * 213.05361 * 19 17 16 22 22 C 1.54928 * 104.22113 * 217.20484 * 21 19 17 23 23 C 1.54989 * 102.82017 * 37.72459 * 22 21 19 24 24 C 1.53483 * 110.07061 * 96.08326 * 19 17 16 25 25 C 1.52548 * 121.08624 * 335.17328 * 24 19 17 26 26 C 1.52571 * 121.05607 * 263.45697 * 24 19 17 27 27 N 1.33772 * 106.49900 * 359.97438 * 14 13 12 28 28 N 1.28636 * 108.88468 * 359.73874 * 27 14 13 29 29 C 1.47069 * 136.05687 * 188.43237 * 9 7 2 30 30 H 0.97003 * 120.00400 * 174.90748 * 1 2 3 31 31 H 1.09003 * 113.47183 * 267.70384 * 10 9 7 32 32 H 1.09005 * 113.46295 * 38.14475 * 10 9 7 33 33 H 1.08995 * 114.57656 * 272.66889 * 11 10 9 34 34 H 1.07997 * 126.91209 * 359.96489 * 13 12 11 35 35 H 1.09001 * 109.46803 * 214.99891 * 15 14 13 36 36 H 1.08999 * 109.46706 * 334.98916 * 15 14 13 37 37 H 0.97000 * 120.00172 * 0.02562 * 16 15 14 38 38 H 1.09002 * 110.47725 * 335.88364 * 21 19 17 39 39 H 1.08998 * 110.48120 * 98.51797 * 21 19 17 40 40 H 1.09010 * 110.73718 * 279.39623 * 22 21 19 41 41 H 1.08996 * 110.89946 * 156.13665 * 22 21 19 42 42 H 1.09004 * 110.50615 * 203.78770 * 23 22 21 43 43 H 1.08998 * 110.62859 * 81.13588 * 23 22 21 44 44 H 1.08999 * 117.51242 * 357.02678 * 25 24 19 45 45 H 1.09007 * 117.50974 * 142.10845 * 25 24 19 46 46 H 1.08998 * 117.51177 * 217.93215 * 26 24 19 47 47 H 1.08994 * 117.51291 * 3.02273 * 26 24 19 48 48 H 1.09005 * 113.46552 * 321.85675 * 29 9 7 49 49 H 1.08996 * 113.46979 * 92.24129 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4400 -0.7000 6 1 1.4477 2.6526 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4973 -2.1219 -0.2390 9 7 3.3451 -1.2220 0.3049 10 6 4.3311 -0.2535 0.8076 11 6 5.1115 -1.4399 1.3970 12 7 6.5654 -1.3295 1.2540 13 6 7.2221 -0.3920 0.5323 14 6 8.5407 -0.6607 0.6763 15 6 9.6883 0.1011 0.0648 16 7 10.1839 1.0909 1.0244 17 6 11.2146 1.8935 0.6929 18 8 11.7316 1.7967 -0.3999 19 6 11.7249 2.9113 1.6803 20 1 10.9333 3.1847 2.3780 21 6 12.2320 4.1647 0.9349 22 6 13.4740 4.6128 1.7453 23 6 14.1259 3.2658 2.1487 24 6 12.9290 2.3453 2.4454 25 6 13.1217 0.8410 2.6093 26 6 12.7580 1.7050 3.8196 27 7 8.6252 -1.7349 1.4691 28 7 7.4377 -2.1034 1.7989 29 6 4.4254 -2.2192 0.2665 30 1 -0.4851 -0.8367 -0.0746 31 1 4.8684 0.2695 0.0165 32 1 3.9296 0.4221 1.5631 33 1 4.7983 -1.7360 2.3981 34 1 6.7824 0.4093 -0.0431 35 1 10.4902 -0.5921 -0.1892 36 1 9.3475 0.6088 -0.8375 37 1 9.7703 1.1686 1.8984 38 1 12.5142 3.9123 -0.0872 39 1 11.4712 4.9452 0.9400 40 1 13.1754 5.1772 2.6288 41 1 14.1519 5.1994 1.1252 42 1 14.7414 3.3911 3.0395 43 1 14.7209 2.8660 1.3276 44 1 12.3480 0.1874 2.2065 45 1 14.1396 0.4548 2.5540 46 1 13.5366 1.8871 4.5603 47 1 11.7451 1.6198 4.2129 48 1 4.1043 -3.2185 0.5609 49 1 4.9869 -2.2152 -0.6677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094298544.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:55 Heat of formation + Delta-G solvation = 124.540432 kcal Electronic energy + Delta-G solvation = -29798.636285 eV Core-core repulsion = 25764.794213 eV Total energy + Delta-G solvation = -4033.842072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.42761 -41.46394 -40.45011 -39.04900 -36.38492 -35.17661 -34.94844 -34.00585 -32.60075 -30.45685 -29.98775 -27.87768 -27.19123 -26.45265 -25.77049 -23.41943 -23.19602 -22.70537 -22.15623 -21.41639 -21.38257 -19.97016 -19.62430 -18.69784 -18.03326 -17.61866 -17.05775 -16.93901 -16.76939 -16.14303 -15.95201 -15.85519 -15.70341 -15.36631 -15.22751 -14.74739 -14.42555 -14.27234 -13.92179 -13.81923 -13.72604 -13.53043 -13.41374 -13.37173 -12.73457 -12.56355 -12.53428 -12.39500 -12.27519 -11.97996 -11.93461 -11.79578 -11.57513 -11.50968 -11.47719 -11.22157 -11.15400 -10.98280 -10.93284 -10.55457 -10.25143 -10.14687 -9.42328 -8.69799 -5.59654 0.50251 1.16811 1.21822 1.38998 1.52428 1.61363 1.65338 2.31824 2.52538 2.77501 2.86025 2.91124 3.12697 3.23685 3.40890 3.64462 3.65885 3.76640 3.84141 3.89049 3.90105 4.03099 4.08414 4.28286 4.35105 4.37604 4.40706 4.42989 4.50042 4.54045 4.60979 4.69590 4.77499 4.78455 4.80966 4.89345 4.94977 5.00134 5.01407 5.02838 5.07854 5.16291 5.21056 5.23189 5.27428 5.34448 5.50702 5.55995 5.87104 6.50085 6.58806 7.20426 7.21461 7.40801 8.06790 8.81169 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.002251 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.305266 B =12438.164062 C =13432.049611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.077 4.077 3 Si 1.094 2.906 4 H -0.268 1.268 5 H -0.242 1.242 6 H -0.304 1.304 7 C -0.300 4.300 8 H 0.053 0.947 9 N -0.638 5.638 10 C 0.098 3.902 11 C 0.117 3.883 12 N -0.270 5.270 13 C -0.015 4.015 14 C -0.048 4.048 15 C 0.217 3.783 16 N -0.716 5.716 17 C 0.525 3.475 18 O -0.575 6.575 19 C -0.075 4.075 20 H 0.112 0.888 21 C -0.113 4.113 22 C -0.114 4.114 23 C -0.088 4.088 24 C -0.123 4.123 25 C -0.187 4.187 26 C -0.148 4.148 27 N -0.279 5.279 28 N -0.105 5.105 29 C 0.116 3.884 30 H 0.249 0.751 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.217 0.783 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.410 0.590 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.102 0.898 48 H 0.065 0.935 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.139 9.261 7.004 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.270 4.270 3 Si 0.917 3.083 4 H -0.194 1.194 5 H -0.166 1.166 6 H -0.232 1.232 7 C -0.427 4.427 8 H 0.071 0.929 9 N -0.367 5.367 10 C -0.028 4.028 11 C 0.014 3.986 12 N -0.062 5.062 13 C -0.167 4.167 14 C -0.187 4.187 15 C 0.092 3.908 16 N -0.368 5.368 17 C 0.313 3.687 18 O -0.455 6.455 19 C -0.096 4.096 20 H 0.130 0.870 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.224 4.224 26 C -0.185 4.185 27 N -0.146 5.146 28 N -0.084 5.084 29 C -0.011 4.011 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.170 0.830 34 H 0.234 0.766 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.246 0.754 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.115 0.885 46 H 0.129 0.871 47 H 0.120 0.880 48 H 0.083 0.917 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 28.231 9.503 7.138 30.631 hybrid contribution -1.246 -1.679 -0.792 2.236 sum 26.985 7.823 6.346 28.804 Atomic orbital electron populations 1.71015 1.06895 1.29065 1.53352 1.27257 0.96424 1.04785 0.98508 0.83466 0.75087 0.71550 0.78151 1.19369 1.16598 1.23214 1.19885 0.81699 0.94960 1.46153 0.92901 1.45773 1.03185 1.10619 1.77100 1.23320 0.88862 0.93123 0.97458 1.24150 0.70653 1.00977 1.02820 1.47520 1.08868 1.19217 1.30635 1.23935 0.92390 0.98565 1.01844 1.21920 0.94319 0.98193 1.04245 1.19249 0.91354 0.89133 0.91060 1.46070 1.34838 1.36688 1.19175 1.20925 0.78394 0.81504 0.87909 1.90672 1.58675 1.71105 1.25005 1.21507 0.98022 0.94166 0.95919 0.86952 1.22368 0.98706 0.94841 0.99199 1.22447 0.96118 0.96461 1.00157 1.21897 0.95066 0.94164 1.01394 1.21613 0.96269 0.94593 0.99897 1.23001 1.02817 0.92760 1.03823 1.23123 1.03760 1.01452 0.90157 1.75045 1.13877 1.12099 1.13550 1.78334 0.92774 1.17636 1.19608 1.22859 0.87748 0.95190 0.95328 0.94163 0.90143 0.90640 0.82951 0.76639 0.90795 0.88506 0.75428 0.91878 0.89816 0.89822 0.90514 0.90027 0.92215 0.90058 0.88540 0.87105 0.87950 0.91654 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.41 13.70 21.65 0.30 -58.12 16 2 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 1.09 46.39 25.51 68.60 1.75 48.14 16 4 H -0.27 -10.33 6.97 99.48 0.69 -9.64 16 5 H -0.24 -8.52 5.64 99.48 0.56 -7.96 16 6 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 7 C -0.30 -15.94 11.04 84.04 0.93 -15.02 16 8 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 9 N -0.64 -26.79 3.62 -738.01 -2.67 -29.46 16 10 C 0.10 3.12 4.94 83.26 0.41 3.53 16 11 C 0.12 3.23 5.35 45.55 0.24 3.48 16 12 N -0.27 -7.02 3.56 -326.15 -1.16 -8.18 16 13 C -0.01 -0.31 10.71 83.49 0.89 0.58 16 14 C -0.05 -1.07 6.62 41.60 0.28 -0.80 16 15 C 0.22 4.25 6.23 85.63 0.53 4.78 16 16 N -0.72 -12.35 5.28 -466.79 -2.46 -14.81 16 17 C 0.52 10.46 5.58 87.66 0.49 10.95 16 18 O -0.58 -16.03 15.78 -3.04 -0.05 -16.07 16 19 C -0.07 -1.08 3.16 -10.91 -0.03 -1.11 16 20 H 0.11 1.13 8.13 -2.38 -0.02 1.11 16 21 C -0.11 -1.58 6.33 31.72 0.20 -1.37 16 22 C -0.11 -1.19 6.91 31.93 0.22 -0.97 16 23 C -0.09 -1.07 6.58 31.57 0.21 -0.86 16 24 C -0.12 -1.70 2.26 -52.02 -0.12 -1.82 16 25 C -0.19 -2.97 9.63 30.47 0.29 -2.68 16 26 C -0.15 -1.69 10.24 30.48 0.31 -1.38 16 27 N -0.28 -7.89 12.41 -48.60 -0.60 -8.49 16 28 N -0.10 -3.10 13.17 37.02 0.49 -2.61 16 29 C 0.12 3.83 8.49 83.18 0.71 4.54 16 30 H 0.25 15.31 8.73 -92.71 -0.81 14.50 16 31 H 0.08 2.24 5.24 -2.39 -0.01 2.22 16 32 H 0.08 2.39 6.26 -2.38 -0.01 2.38 16 33 H 0.15 3.97 8.14 -2.39 -0.02 3.95 16 34 H 0.22 3.44 6.77 -2.91 -0.02 3.42 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.41 5.78 8.45 -92.71 -0.78 5.00 16 38 H 0.06 1.20 6.93 -2.39 -0.02 1.19 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 0.76 8.11 -2.39 -0.02 0.74 16 43 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 1.56 7.08 -2.39 -0.02 1.54 16 45 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.07 2.15 8.14 -2.38 -0.02 2.14 16 49 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -70.74 393.76 1.61 -69.12 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -0.01 Total: 22.37 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 6.03 Total: -1.89 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -6.11 Total: -121.66 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.05 Total: -16.07 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.75 Total: 48.14 kcal Total: -70.74 1.61 -69.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094298544.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.664 kcal (2) G-P(sol) polarization free energy of solvation -70.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds