Wall clock time and date at job start Sat Apr 11 2020 07:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46850 * 110.99755 * 2 1 4 4 C 1.53037 * 109.52098 * 185.83946 * 3 2 1 5 5 C 1.53121 * 109.27944 * 300.81558 * 4 3 2 6 6 C 1.50696 * 109.52458 * 177.56187 * 5 4 3 7 7 O 1.21282 * 120.00262 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99732 * 180.27776 * 6 5 4 9 9 C 1.46503 * 119.99697 * 179.72192 * 8 6 5 10 10 C 1.52999 * 109.46781 * 179.97438 * 9 8 6 11 11 H 1.08995 * 109.50153 * 55.06768 * 10 9 8 12 12 C 1.53190 * 109.50002 * 294.99916 * 10 9 8 13 13 N 1.46921 * 108.77489 * 185.41422 * 12 10 9 14 14 C 1.36937 * 120.62958 * 233.62709 * 13 12 10 15 15 H 1.07999 * 120.00045 * 27.97237 * 14 13 12 16 16 C 1.38815 * 120.00323 * 207.96319 * 14 13 12 17 17 N 1.31620 * 119.99897 * 17.50489 * 16 14 13 18 18 Si 1.86796 * 120.00276 * 197.50958 * 16 14 13 19 19 H 1.48494 * 109.47366 * 94.06512 * 18 16 14 20 20 H 1.48503 * 109.47079 * 214.06618 * 18 16 14 21 21 H 1.48501 * 109.47063 * 334.06433 * 18 16 14 22 22 C 1.46926 * 118.73998 * 53.61647 * 13 12 10 23 23 C 1.53188 * 108.77153 * 306.38557 * 22 13 12 24 24 C 1.53040 * 109.31326 * 54.63609 * 23 22 13 25 25 F 1.39902 * 109.46014 * 178.61322 * 24 23 22 26 26 F 1.39897 * 109.45897 * 58.65479 * 24 23 22 27 27 C 1.53125 * 109.15663 * 57.65541 * 5 4 3 28 28 C 1.46844 * 111.00045 * 124.20506 * 2 1 3 29 29 H 1.09001 * 109.46598 * 60.00290 * 1 2 3 30 30 H 1.08994 * 109.46855 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47343 * 300.00142 * 1 2 3 32 32 H 1.09001 * 109.46613 * 65.82122 * 3 2 1 33 33 H 1.09009 * 109.45222 * 305.84440 * 3 2 1 34 34 H 1.08998 * 109.50342 * 180.87929 * 4 3 2 35 35 H 1.09001 * 109.53891 * 60.78092 * 4 3 2 36 36 H 1.09002 * 109.52415 * 297.68968 * 5 4 3 37 37 H 0.96996 * 120.00292 * 359.72272 * 8 6 5 38 38 H 1.08998 * 109.47531 * 300.00304 * 9 8 6 39 39 H 1.09001 * 109.47100 * 59.99992 * 9 8 6 40 40 H 1.09002 * 109.58997 * 305.20705 * 12 10 9 41 41 H 1.09001 * 109.58404 * 65.63092 * 12 10 9 42 42 H 0.96997 * 120.00093 * 180.02562 * 17 16 14 43 43 H 1.08993 * 109.58891 * 66.17411 * 22 13 12 44 44 H 1.08999 * 109.58773 * 186.60412 * 22 13 12 45 45 H 1.09000 * 109.49821 * 174.58678 * 23 22 13 46 46 H 1.08999 * 109.49795 * 294.68462 * 23 22 13 47 47 H 1.08998 * 109.49941 * 62.28801 * 27 5 4 48 48 H 1.09006 * 109.50116 * 182.40692 * 27 5 4 49 49 H 1.09008 * 109.46459 * 294.17967 * 28 2 1 50 50 H 1.08997 * 109.46144 * 54.15501 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5371 1.0144 6 6 5.6133 0.4465 0.8432 7 8 6.1468 0.9674 -0.1133 8 7 6.3563 -0.2186 1.7499 9 6 7.8085 -0.3119 1.5803 10 6 8.4068 -1.1127 2.7385 11 1 7.9147 -2.0832 2.8024 12 6 8.2006 -0.3476 4.0496 13 7 8.8925 -1.0646 5.1293 14 6 8.2235 -1.4235 6.2690 15 1 7.1599 -1.6076 6.2355 16 6 8.9125 -1.5509 7.4673 17 7 10.1046 -1.0093 7.6018 18 14 8.1479 -2.4909 8.8890 19 1 8.6136 -3.9006 8.8577 20 1 8.5540 -1.8638 10.1724 21 1 6.6684 -2.4555 8.7671 22 6 10.3157 -1.3894 4.9630 23 6 10.4982 -2.1428 3.6417 24 6 9.9051 -1.3138 2.5002 25 9 10.0983 -1.9846 1.2878 26 9 10.5403 -0.0684 2.4498 27 6 3.5181 -0.8714 1.0209 28 6 1.9953 -0.7707 1.1338 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7324 1.8609 0.9375 33 1 1.5634 1.9256 -0.8332 34 1 3.9099 2.3513 -0.1310 35 1 3.7820 0.8572 -1.0906 36 1 3.8896 1.0362 1.9560 37 1 5.9296 -0.6355 2.5148 38 1 8.0329 -0.8119 0.6381 39 1 8.2383 0.6898 1.5713 40 1 8.6129 0.6570 3.9552 41 1 7.1357 -0.2882 4.2743 42 1 10.5862 -1.0986 8.4390 43 1 10.9005 -0.4698 4.9431 44 1 10.6463 -2.0173 5.7903 45 1 11.5605 -2.3054 3.4594 46 1 9.9869 -3.1038 3.6973 47 1 3.7814 -1.3835 0.0955 48 1 3.9099 -1.4301 1.8710 49 1 1.7324 -0.2707 2.0661 50 1 1.5636 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046968260.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:44 Heat of formation + Delta-G solvation = -143.687384 kcal Electronic energy + Delta-G solvation = -31930.425235 eV Core-core repulsion = 27434.262746 eV Total energy + Delta-G solvation = -4496.162489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -49.99837 -47.95540 -41.29916 -39.44775 -38.82556 -36.39751 -34.71186 -34.26583 -32.36659 -31.99794 -31.68290 -28.43090 -27.16287 -26.67127 -24.47308 -24.10837 -23.90869 -22.92925 -21.71998 -21.13564 -20.59262 -19.03073 -18.35484 -18.18826 -17.68140 -17.03289 -16.96843 -16.76072 -16.57369 -16.15445 -16.00575 -15.71318 -15.49113 -15.36533 -15.03463 -14.82473 -14.63699 -14.51047 -14.29189 -14.27667 -13.88671 -13.81094 -13.36831 -13.29383 -13.26398 -13.17922 -13.04984 -13.00117 -12.62058 -12.53271 -12.26079 -12.23853 -12.16991 -12.13063 -11.90609 -11.68147 -11.63971 -11.42699 -11.31646 -10.75075 -10.56933 -10.15998 -9.25043 -8.80720 -7.90477 -5.37305 1.51406 1.53734 1.60289 1.61763 2.04604 2.50117 2.80362 3.01624 3.16519 3.23099 3.28833 3.51738 3.55436 3.62376 3.76377 3.84245 3.91592 4.08396 4.18270 4.23156 4.28074 4.38000 4.47794 4.49793 4.55954 4.57969 4.59955 4.66188 4.75000 4.75556 4.78082 4.84722 4.88641 4.91719 4.96530 5.06896 5.08190 5.10544 5.18740 5.27796 5.30988 5.39400 5.58467 5.67014 6.14355 6.15832 6.33973 6.49606 7.08537 7.20212 7.76374 8.29347 9.17762 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.010874 B = 0.002993 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.280797 B = 9352.708203 C =11292.489705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.562 5.562 3 C 0.061 3.939 4 C -0.093 4.093 5 C -0.101 4.101 6 C 0.517 3.483 7 O -0.583 6.583 8 N -0.713 5.713 9 C 0.136 3.864 10 C -0.137 4.137 11 H 0.120 0.880 12 C 0.156 3.844 13 N -0.605 5.605 14 C -0.263 4.263 15 H 0.082 0.918 16 C -0.047 4.047 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.287 1.287 20 H -0.302 1.302 21 H -0.262 1.262 22 C 0.177 3.823 23 C -0.168 4.168 24 C 0.298 3.702 25 F -0.207 7.207 26 F -0.211 7.211 27 C -0.104 4.104 28 C 0.057 3.943 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.113 0.887 37 H 0.415 0.585 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.014 0.986 41 H 0.084 0.916 42 H 0.251 0.749 43 H 0.003 0.997 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.064 0.936 48 H 0.091 0.909 49 H 0.044 0.956 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.220 -1.069 -12.158 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.287 5.287 3 C -0.067 4.067 4 C -0.132 4.132 5 C -0.122 4.122 6 C 0.305 3.695 7 O -0.463 6.463 8 N -0.365 5.365 9 C 0.010 3.990 10 C -0.159 4.159 11 H 0.138 0.862 12 C 0.030 3.970 13 N -0.327 5.327 14 C -0.392 4.392 15 H 0.100 0.900 16 C -0.243 4.243 17 N -0.581 5.581 18 Si 0.796 3.204 19 H -0.213 1.213 20 H -0.229 1.229 21 H -0.187 1.187 22 C 0.051 3.949 23 C -0.208 4.208 24 C 0.261 3.739 25 F -0.188 7.188 26 F -0.192 7.192 27 C -0.142 4.142 28 C -0.070 4.070 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.252 0.748 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.032 0.968 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.021 0.979 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.119 0.881 47 H 0.082 0.918 48 H 0.109 0.891 49 H 0.062 0.938 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.584 -0.905 -13.133 20.400 hybrid contribution 0.168 0.156 1.778 1.793 sum -15.416 -0.749 -11.355 19.161 Atomic orbital electron populations 1.22380 0.86028 1.02737 1.01097 1.61935 1.08769 1.13962 1.44029 1.22077 0.93998 0.89312 1.01338 1.21345 0.94570 0.99867 0.97396 1.21420 0.88734 0.99844 1.02233 1.21174 0.90411 0.76647 0.81268 1.90682 1.74976 1.48193 1.32468 1.45880 1.06836 1.55871 1.27930 1.21052 0.81018 0.99812 0.97070 1.22769 0.92209 1.03481 0.97392 0.86155 1.20958 0.98025 0.92430 0.85631 1.44321 1.07243 1.64663 1.16484 1.19581 0.93999 1.39704 0.85935 0.90020 1.25832 0.97944 1.00788 0.99728 1.70182 1.15710 1.46151 1.26047 0.85246 0.78725 0.78065 0.78329 1.21333 1.22940 1.18671 1.20555 0.84924 0.96066 0.93350 1.23096 1.02612 1.00385 0.94685 1.21095 0.93484 0.77406 0.81882 1.92969 1.96393 1.80658 1.48820 1.92951 1.84440 1.45088 1.96720 1.21589 0.95379 0.93809 1.03417 1.22108 0.94152 0.99147 0.91620 0.90922 0.90656 0.95202 0.93960 0.89789 0.91442 0.92273 0.86880 0.74750 0.91380 0.92515 0.96830 0.89769 0.94012 0.97876 0.90808 0.89080 0.88125 0.91750 0.89087 0.93761 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.59 127.69 1.22 1.51 16 2 N -0.56 -8.52 4.91 -922.58 -4.53 -13.05 16 3 C 0.06 0.92 5.46 86.33 0.47 1.39 16 4 C -0.09 -1.82 4.68 30.65 0.14 -1.67 16 5 C -0.10 -1.86 2.59 -11.46 -0.03 -1.89 16 6 C 0.52 13.31 7.16 87.66 0.63 13.94 16 7 O -0.58 -20.12 15.98 -3.04 -0.05 -20.17 16 8 N -0.71 -16.89 5.23 -463.05 -2.42 -19.31 16 9 C 0.14 3.91 4.83 86.38 0.42 4.32 16 10 C -0.14 -4.17 2.03 -10.72 -0.02 -4.20 16 11 H 0.12 3.28 8.14 -2.39 -0.02 3.27 16 12 C 0.16 5.67 5.40 86.36 0.47 6.13 16 13 N -0.60 -27.21 2.99 -699.12 -2.09 -29.30 16 14 C -0.26 -12.83 9.58 84.03 0.81 -12.03 16 15 H 0.08 3.73 7.89 -2.91 -0.02 3.70 16 16 C -0.05 -2.42 4.90 84.86 0.42 -2.01 16 17 N -0.94 -52.24 11.22 21.65 0.24 -52.00 16 18 Si 0.97 41.34 29.59 68.60 2.03 43.37 16 19 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 C 0.18 7.96 5.11 86.36 0.44 8.40 16 23 C -0.17 -5.90 5.62 30.67 0.17 -5.73 16 24 C 0.30 10.10 1.63 30.62 0.05 10.15 16 25 F -0.21 -6.76 16.41 44.97 0.74 -6.03 16 26 F -0.21 -8.05 15.72 44.97 0.71 -7.35 16 27 C -0.10 -1.57 5.25 30.65 0.16 -1.41 16 28 C 0.06 0.77 5.46 86.32 0.47 1.24 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 31 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 1.16 8.12 -2.38 -0.02 1.14 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.39 8.04 -2.39 -0.02 1.38 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.42 7.80 7.18 -92.71 -0.67 7.13 16 38 H 0.07 2.05 7.63 -2.39 -0.02 2.03 16 39 H 0.06 1.86 7.97 -2.39 -0.02 1.84 16 40 H 0.01 0.56 7.92 -2.39 -0.02 0.54 16 41 H 0.08 2.72 7.13 -2.39 -0.02 2.70 16 42 H 0.25 13.68 8.31 -92.71 -0.77 12.90 16 43 H 0.00 0.16 7.92 -2.39 -0.02 0.14 16 44 H 0.07 3.72 6.06 -2.39 -0.01 3.70 16 45 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 46 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 47 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.09 1.09 7.66 -2.38 -0.02 1.08 16 49 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 50 H 0.09 1.02 8.09 -2.39 -0.02 1.01 16 Total: -1.00 -64.49 392.11 0.70 -63.79 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.27 Total: 21.89 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 5.82 Total: 18.15 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -8.80 Total: -113.66 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.05 Total: -20.17 kcal Atomic # 9 Polarization: -14.82 SS G_CDS: 1.45 Total: -13.37 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -64.49 0.70 -63.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046968260.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.902 kcal (2) G-P(sol) polarization free energy of solvation -64.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds