Wall clock time and date at job start Sat Apr 11 2020 07:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00318 * 2 1 4 4 C 1.46900 * 111.00113 * 123.95496 * 2 1 3 5 5 H 1.08990 * 109.47229 * 300.56442 * 4 2 1 6 6 C 1.50705 * 109.47081 * 60.56521 * 4 2 1 7 7 O 1.21284 * 119.99980 * 28.04961 * 6 4 2 8 8 N 1.34768 * 119.99893 * 208.04837 * 6 4 2 9 9 C 1.47429 * 125.64956 * 359.69321 * 8 6 4 10 10 C 1.55137 * 104.72445 * 155.81646 * 9 8 6 11 11 H 1.08996 * 110.90438 * 155.27282 * 10 9 8 12 12 N 1.46496 * 111.22037 * 279.17941 * 10 9 8 13 13 C 1.36941 * 119.99813 * 267.19683 * 12 10 9 14 14 H 1.08004 * 120.00030 * 0.02562 * 13 12 10 15 15 C 1.38812 * 120.00290 * 180.02562 * 13 12 10 16 16 N 1.31622 * 119.99797 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00203 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47112 * 120.00201 * 17 15 13 20 20 H 1.48502 * 109.47106 * 240.00414 * 17 15 13 21 21 C 1.55163 * 101.48273 * 37.29316 * 10 9 8 22 22 C 1.52995 * 110.71564 * 205.97069 * 21 10 9 23 23 C 1.53001 * 110.87009 * 82.77149 * 21 10 9 24 24 C 1.47032 * 125.65033 * 179.97438 * 8 6 4 25 25 C 1.50703 * 109.47000 * 180.56322 * 4 2 1 26 26 C 1.38231 * 119.99904 * 313.20763 * 25 4 2 27 27 C 1.38241 * 119.99729 * 179.76863 * 26 25 4 28 28 C 1.38238 * 119.99889 * 0.48753 * 27 26 25 29 29 C 1.38242 * 119.99829 * 359.78566 * 28 27 26 30 30 C 1.38231 * 119.99574 * 133.48575 * 25 4 2 31 31 H 1.08994 * 109.47173 * 59.99827 * 1 2 3 32 32 H 1.08994 * 109.46941 * 299.99562 * 1 2 3 33 33 H 1.09004 * 109.46932 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47055 * 60.87703 * 3 2 1 35 35 H 1.08993 * 109.47548 * 180.88380 * 3 2 1 36 36 H 1.09008 * 109.47088 * 300.88382 * 3 2 1 37 37 H 1.08998 * 110.36339 * 274.74159 * 9 8 6 38 38 H 1.08997 * 110.36829 * 37.06671 * 9 8 6 39 39 H 0.96991 * 120.00536 * 87.20889 * 12 10 9 40 40 H 0.97001 * 119.99706 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.47046 * 174.98119 * 22 21 10 42 42 H 1.09005 * 109.47653 * 294.97515 * 22 21 10 43 43 H 1.09001 * 109.47853 * 54.97903 * 22 21 10 44 44 H 1.09000 * 109.46785 * 304.92907 * 23 21 10 45 45 H 1.08997 * 109.47260 * 64.93289 * 23 21 10 46 46 H 1.08997 * 109.46967 * 184.93279 * 23 21 10 47 47 H 1.08992 * 109.87994 * 300.44439 * 24 8 6 48 48 H 1.08997 * 109.87475 * 61.60548 * 24 8 6 49 49 H 1.08001 * 120.00427 * 359.97438 * 26 25 4 50 50 H 1.07996 * 120.00250 * 180.25782 * 27 26 25 51 51 H 1.07994 * 119.99862 * 179.77187 * 28 27 26 52 52 H 1.07996 * 119.99585 * 179.97438 * 29 28 27 53 53 H 1.08000 * 120.00772 * 359.97438 * 30 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.6379 -0.3261 2.0684 6 6 1.5236 -2.1941 1.0430 7 8 1.2804 -2.6819 -0.0405 8 7 1.3720 -2.9292 2.1623 9 6 1.6367 -2.4663 3.5367 10 6 0.7598 -3.3773 4.4355 11 1 1.1703 -3.4406 5.4432 12 7 -0.6294 -2.9136 4.4654 13 6 -1.0443 -2.0570 5.4500 14 1 -0.3471 -1.7231 6.2043 15 6 -2.3608 -1.6180 5.4788 16 7 -3.2106 -2.0253 4.5599 17 14 -2.9265 -0.4490 6.8215 18 1 -1.7876 -0.1443 7.7246 19 1 -3.4205 0.8092 6.2067 20 1 -4.0208 -1.0823 7.6005 21 6 0.8758 -4.7393 3.7012 22 6 -0.3482 -5.6125 3.9839 23 6 2.1612 -5.4665 4.1011 24 6 0.9208 -4.3276 2.2146 25 6 3.5019 -0.7319 1.1120 26 6 4.1789 -0.9785 -0.0677 27 6 5.5606 -0.9425 -0.0922 28 6 6.2655 -0.6699 1.0653 29 6 5.5886 -0.4289 2.2463 30 6 4.2068 -0.4598 2.2695 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6588 1.8898 0.8978 35 1 3.0850 1.3423 -0.0158 36 1 1.6333 1.8997 -0.8820 37 1 2.6916 -2.5898 3.7820 38 1 1.3396 -1.4237 3.6497 39 1 -1.2555 -3.2133 3.7879 40 1 -4.1307 -1.7187 4.5802 41 1 -0.2889 -6.5246 3.3899 42 1 -0.3743 -5.8698 5.0429 43 1 -1.2535 -5.0656 3.7205 44 1 3.0175 -4.8169 3.9199 45 1 2.1184 -5.7246 5.1593 46 1 2.2633 -6.3759 3.5091 47 1 -0.0733 -4.4129 1.7759 48 1 1.6223 -4.9638 1.6750 49 1 3.6283 -1.1959 -0.9711 50 1 6.0894 -1.1310 -1.0148 51 1 7.3450 -0.6455 1.0469 52 1 6.1393 -0.2164 3.1506 53 1 3.6780 -0.2712 3.1922 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996676092.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:38:35 Heat of formation + Delta-G solvation = 3.717883 kcal Electronic energy + Delta-G solvation = -32591.803293 eV Core-core repulsion = 28656.262306 eV Total energy + Delta-G solvation = -3935.540987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.79256 -40.38494 -39.21643 -37.59030 -35.70260 -34.69005 -32.79662 -32.59107 -31.77559 -29.53702 -29.28208 -28.31769 -27.97555 -26.94287 -25.67541 -23.85075 -23.43129 -23.09638 -22.26176 -20.33266 -19.88178 -19.09076 -18.22456 -17.99368 -17.24316 -16.95059 -16.54964 -16.26364 -16.18967 -15.72885 -15.51378 -15.31977 -15.17659 -14.93922 -14.73518 -14.40888 -14.31450 -14.08271 -13.77558 -13.63200 -13.53393 -13.35001 -13.25707 -13.19933 -13.02295 -12.95318 -12.85707 -12.78637 -12.66145 -12.57990 -12.13028 -12.04404 -11.94005 -11.93318 -11.80232 -11.47459 -11.31371 -11.00613 -10.91459 -9.80725 -9.70245 -9.61460 -9.47704 -8.96205 -7.92999 -5.21206 0.34338 0.51858 1.46902 1.48054 1.56504 1.57009 1.93149 2.55611 2.74517 2.99397 3.37624 3.39679 3.62366 3.75499 3.80007 3.86042 3.90358 4.05858 4.09575 4.19869 4.23179 4.29602 4.32280 4.34799 4.45408 4.53217 4.59280 4.59993 4.64514 4.69044 4.72018 4.76085 4.86563 4.86665 4.89251 4.91470 4.99150 5.03832 5.08145 5.11469 5.18658 5.29226 5.32569 5.41810 5.53490 5.55673 5.59373 5.60960 5.63480 5.81402 5.93174 6.10542 6.27394 6.53759 7.14718 7.34952 8.09370 8.32463 9.30311 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010035 B = 0.004062 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.621977 B = 6891.783788 C = 7791.443073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.530 5.530 3 C 0.028 3.972 4 C 0.120 3.880 5 H 0.059 0.941 6 C 0.533 3.467 7 O -0.568 6.568 8 N -0.602 5.602 9 C 0.081 3.919 10 C 0.169 3.831 11 H 0.087 0.913 12 N -0.719 5.719 13 C -0.233 4.233 14 H 0.084 0.916 15 C -0.071 4.071 16 N -0.968 5.968 17 Si 0.964 3.036 18 H -0.261 1.261 19 H -0.302 1.302 20 H -0.298 1.298 21 C -0.077 4.077 22 C -0.120 4.120 23 C -0.124 4.124 24 C 0.123 3.877 25 C -0.089 4.089 26 C -0.099 4.099 27 C -0.127 4.127 28 C -0.112 4.112 29 C -0.119 4.119 30 C -0.116 4.116 31 H 0.092 0.908 32 H 0.020 0.980 33 H 0.043 0.957 34 H 0.027 0.973 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.372 0.628 40 H 0.247 0.753 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.033 0.967 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.037 0.963 48 H 0.070 0.930 49 H 0.111 0.889 50 H 0.140 0.860 51 H 0.151 0.849 52 H 0.149 0.851 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.284 1.290 -4.244 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.254 5.254 3 C -0.119 4.119 4 C 0.008 3.992 5 H 0.077 0.923 6 C 0.321 3.679 7 O -0.447 6.447 8 N -0.335 5.335 9 C -0.045 4.045 10 C 0.058 3.942 11 H 0.105 0.895 12 N -0.357 5.357 13 C -0.364 4.364 14 H 0.102 0.898 15 C -0.263 4.263 16 N -0.619 5.619 17 Si 0.794 3.206 18 H -0.185 1.185 19 H -0.229 1.229 20 H -0.226 1.226 21 C -0.078 4.078 22 C -0.178 4.178 23 C -0.181 4.181 24 C 0.001 3.999 25 C -0.090 4.090 26 C -0.118 4.118 27 C -0.145 4.145 28 C -0.130 4.130 29 C -0.136 4.136 30 C -0.134 4.134 31 H 0.110 0.890 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.205 0.795 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.055 0.945 48 H 0.089 0.911 49 H 0.129 0.871 50 H 0.158 0.842 51 H 0.168 0.832 52 H 0.167 0.833 53 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 20.298 0.963 -5.138 20.960 hybrid contribution -2.006 0.976 0.872 2.395 sum 18.292 1.940 -4.266 18.883 Atomic orbital electron populations 1.22340 0.86963 1.01315 1.01298 1.61772 1.07905 1.14865 1.40859 1.22463 1.01301 0.86625 1.01506 1.20370 0.93858 0.90988 0.93962 0.92341 1.20246 0.77051 0.87875 0.82686 1.90625 1.52595 1.73208 1.28290 1.48405 1.64825 1.13420 1.06810 1.23373 1.00260 0.99822 0.81026 1.21675 0.84799 0.90814 0.96921 0.89548 1.42524 1.06518 1.54529 1.32175 1.19683 0.93977 1.18294 1.04470 0.89826 1.25453 0.96877 1.03094 1.00912 1.69839 1.04219 1.50218 1.37647 0.85204 0.78160 0.78126 0.79067 1.18472 1.22941 1.22565 1.21882 0.97921 0.95764 0.92252 1.21559 0.96001 0.98446 1.01803 1.21714 0.94128 0.99893 1.02375 1.21998 0.98334 0.82015 0.97600 1.19261 0.91303 1.03129 0.95275 1.21050 0.95012 0.98331 0.97378 1.21414 0.93170 1.00075 0.99822 1.21543 1.01291 0.98006 0.92182 1.21401 0.93266 0.99545 0.99427 1.21210 0.95391 0.99839 0.96995 0.88976 0.96100 0.93823 0.95453 0.90410 0.89494 0.89260 0.92291 0.79489 0.94383 0.91518 0.92079 0.94827 0.91947 0.90933 0.91228 0.94481 0.91145 0.87124 0.84191 0.83157 0.83296 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.29 127.69 1.19 2.16 16 2 N -0.53 -16.57 4.15 -932.22 -3.87 -20.44 16 3 C 0.03 0.69 9.23 127.69 1.18 1.87 16 4 C 0.12 3.85 1.63 43.43 0.07 3.92 16 5 H 0.06 1.98 6.39 -2.39 -0.02 1.96 16 6 C 0.53 20.19 5.85 87.66 0.51 20.71 16 7 O -0.57 -25.02 15.98 -3.04 -0.05 -25.07 16 8 N -0.60 -21.29 3.33 -811.34 -2.70 -23.99 16 9 C 0.08 2.58 6.08 86.93 0.53 3.11 16 10 C 0.17 5.88 2.96 46.47 0.14 6.02 16 11 H 0.09 2.83 7.99 -2.39 -0.02 2.81 16 12 N -0.72 -33.42 4.57 -316.00 -1.44 -34.87 16 13 C -0.23 -11.92 9.96 84.03 0.84 -11.09 16 14 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 15 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 16 N -0.97 -58.18 13.06 21.65 0.28 -57.89 16 17 Si 0.96 44.63 29.55 68.60 2.03 46.66 16 18 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 20 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 21 C -0.08 -2.28 0.80 -50.99 -0.04 -2.32 16 22 C -0.12 -3.82 8.15 71.98 0.59 -3.23 16 23 C -0.12 -2.69 8.44 71.98 0.61 -2.08 16 24 C 0.12 4.19 6.04 86.72 0.52 4.71 16 25 C -0.09 -2.38 3.50 -19.87 -0.07 -2.45 16 26 C -0.10 -2.57 8.43 22.27 0.19 -2.38 16 27 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 28 C -0.11 -1.81 10.05 22.27 0.22 -1.59 16 29 C -0.12 -2.04 10.05 22.27 0.22 -1.81 16 30 C -0.12 -2.56 9.67 22.27 0.22 -2.35 16 31 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.04 1.74 6.35 -2.39 -0.02 1.73 16 34 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 1.79 6.29 -2.39 -0.02 1.78 16 36 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.09 2.31 7.71 -2.39 -0.02 2.29 16 38 H 0.06 2.10 6.77 -2.39 -0.02 2.08 16 39 H 0.37 19.57 6.32 -92.71 -0.59 18.98 16 40 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.03 1.32 6.34 -2.39 -0.02 1.31 16 44 H 0.06 1.28 7.44 -2.39 -0.02 1.26 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.04 1.46 7.82 -2.39 -0.02 1.44 16 48 H 0.07 2.22 7.84 -2.39 -0.02 2.20 16 49 H 0.11 3.31 7.93 -2.91 -0.02 3.29 16 50 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 51 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 52 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 53 H 0.13 2.63 7.99 -2.91 -0.02 2.61 16 Total: -1.00 -68.59 416.24 2.15 -66.43 By element: Atomic # 1 Polarization: 41.37 SS G_CDS: 0.30 Total: 41.67 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 7.60 Total: 7.49 kcal Atomic # 7 Polarization: -129.46 SS G_CDS: -7.73 Total: -137.18 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.05 Total: -25.07 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -68.59 2.15 -66.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996676092.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.152 kcal (2) G-P(sol) polarization free energy of solvation -68.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds