Wall clock time and date at job start Sat Apr 11 2020 07:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47087 * 2 1 4 4 C 1.50700 * 109.47221 * 180.02562 * 3 2 1 5 5 C 1.38169 * 119.55299 * 125.00155 * 4 3 2 6 6 C 1.39790 * 119.00283 * 179.74984 * 5 4 3 7 7 C 1.48151 * 120.92633 * 180.23274 * 6 5 4 8 8 O 1.21516 * 119.99466 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00136 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99815 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47085 * 324.99249 * 10 9 7 12 12 C 1.52994 * 109.47308 * 84.99872 * 10 9 7 13 13 C 1.53004 * 109.46937 * 204.99691 * 10 9 7 14 14 C 1.53037 * 109.46020 * 300.06716 * 13 10 9 15 15 C 1.53192 * 109.31554 * 178.61407 * 14 13 10 16 16 N 1.46931 * 108.77574 * 54.63409 * 15 14 13 17 17 C 1.36932 * 120.63233 * 126.41572 * 16 15 14 18 18 H 1.08004 * 119.99981 * 207.66146 * 17 16 15 19 19 C 1.38813 * 120.00150 * 27.65623 * 17 16 15 20 20 N 1.31620 * 119.99536 * 17.38002 * 19 17 16 21 21 Si 1.86793 * 120.00133 * 197.37895 * 19 17 16 22 22 H 1.48507 * 109.47344 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47049 * 120.00148 * 21 19 17 24 24 H 1.48505 * 109.47219 * 240.00187 * 21 19 17 25 25 C 1.46932 * 118.73536 * 306.39578 * 16 15 14 26 26 C 1.53037 * 109.45929 * 179.97438 * 13 10 9 27 27 C 1.39836 * 118.15613 * 0.25079 * 6 5 4 28 28 C 1.38133 * 119.00103 * 0.02562 * 27 6 5 29 29 N 1.31797 * 119.55307 * 305.29761 * 4 3 2 30 30 H 1.08998 * 109.47308 * 59.99617 * 1 2 3 31 31 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47006 * 299.99777 * 1 2 3 33 33 H 1.09004 * 109.46679 * 240.00656 * 2 1 3 34 34 H 1.08998 * 109.47308 * 120.00383 * 2 1 3 35 35 H 1.09004 * 109.46825 * 60.00745 * 3 2 1 36 36 H 1.08998 * 109.47359 * 300.00352 * 3 2 1 37 37 H 1.08000 * 120.50040 * 0.02565 * 5 4 3 38 38 H 0.97005 * 120.00343 * 359.97438 * 9 7 6 39 39 H 1.08996 * 109.47556 * 59.99666 * 12 10 9 40 40 H 1.09001 * 109.47195 * 179.97438 * 12 10 9 41 41 H 1.09000 * 109.47411 * 299.99868 * 12 10 9 42 42 H 1.09004 * 109.46211 * 60.02367 * 13 10 9 43 43 H 1.09001 * 109.49954 * 298.56415 * 14 13 10 44 44 H 1.09003 * 109.49950 * 58.66483 * 14 13 10 45 45 H 1.08998 * 109.58445 * 294.84930 * 15 14 13 46 46 H 1.08991 * 109.59113 * 174.42302 * 15 14 13 47 47 H 0.97002 * 120.00023 * 179.97438 * 20 19 17 48 48 H 1.09007 * 109.58449 * 293.81795 * 25 16 15 49 49 H 1.09000 * 109.58348 * 173.39293 * 25 16 15 50 50 H 1.09000 * 109.49621 * 301.33643 * 26 13 10 51 51 H 1.08992 * 109.50115 * 61.40538 * 26 13 10 52 52 H 1.08001 * 120.50690 * 179.97438 * 27 6 5 53 53 H 1.08000 * 119.55092 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2280 2.1321 -0.9854 6 6 5.6259 2.1288 -0.9719 7 6 6.3990 2.8582 -2.0040 8 8 5.8182 3.4701 -2.8786 9 7 7.7462 2.8420 -1.9736 10 6 8.5107 3.5637 -2.9939 11 1 7.9841 3.5117 -3.9468 12 6 8.6649 5.0273 -2.5755 13 6 9.8941 2.9267 -3.1403 14 6 10.6325 2.9983 -1.8018 15 6 12.0032 2.3289 -1.9429 16 7 12.7214 2.9531 -3.0624 17 6 13.9798 3.4634 -2.8862 18 1 14.3250 4.2760 -3.5083 19 6 14.8119 2.9363 -1.9081 20 7 14.5508 1.7556 -1.3884 21 14 16.3020 3.9027 -1.3294 22 1 16.3724 5.1912 -2.0644 23 1 16.1838 4.1698 0.1266 24 1 17.5341 3.1157 -1.5899 25 6 12.0637 3.0191 -4.3746 26 6 10.6921 3.6804 -4.2066 27 6 6.2743 1.4177 0.0426 28 6 5.5145 0.7511 0.9841 29 7 4.1974 0.7799 0.9347 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6766 1.9564 -0.8899 37 1 3.6886 2.6693 -1.7514 38 1 8.2098 2.3532 -1.2756 39 1 9.1914 5.0793 -1.6226 40 1 9.2340 5.5641 -3.3345 41 1 7.6794 5.4811 -2.4712 42 1 9.7841 1.8841 -3.4388 43 1 10.7650 4.0414 -1.5146 44 1 10.0520 2.4810 -1.0378 45 1 11.8716 1.2651 -2.1409 46 1 12.5722 2.4638 -1.0231 47 1 15.1323 1.3871 -0.7051 48 1 11.9371 2.0115 -4.7709 49 1 12.6727 3.6094 -5.0593 50 1 10.1540 3.6485 -5.1540 51 1 10.8236 4.7173 -3.8976 52 1 7.3529 1.3893 0.0890 53 1 6.0061 0.1987 1.7712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997629273.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:39:04 Heat of formation + Delta-G solvation = -19.812651 kcal Electronic energy + Delta-G solvation = -30145.386280 eV Core-core repulsion = 26208.824932 eV Total energy + Delta-G solvation = -3936.561348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.83242 -40.67448 -39.41205 -36.86284 -36.16126 -34.66036 -33.74739 -32.61039 -32.12984 -31.60508 -30.21945 -27.93286 -27.18321 -26.09549 -24.60050 -23.98314 -23.84274 -22.66974 -21.98330 -21.15300 -20.21320 -19.02578 -18.55383 -17.75398 -16.92849 -16.71836 -16.68260 -16.39903 -16.19193 -15.80280 -15.65859 -15.48333 -15.29790 -14.97299 -14.90658 -14.78987 -14.62675 -14.16284 -14.09086 -13.80993 -13.60380 -13.14865 -13.06801 -12.97151 -12.95899 -12.89957 -12.57500 -12.45296 -12.21274 -12.16278 -12.05644 -11.91503 -11.73644 -11.59525 -11.55225 -11.39829 -11.12965 -10.99656 -10.96278 -10.51392 -10.48838 -10.17986 -10.00815 -8.65183 -7.85976 -5.29737 -0.37506 0.04195 1.45914 1.48856 1.58463 1.76929 1.96122 2.52372 2.77015 3.25943 3.28316 3.43082 3.64211 3.70026 3.79837 3.88496 3.91782 3.97463 4.04239 4.18707 4.22112 4.27020 4.37351 4.42623 4.55079 4.60187 4.63320 4.66386 4.72406 4.76825 4.78455 4.85920 4.90494 4.94101 4.95268 4.99244 5.01552 5.04693 5.15861 5.23776 5.24515 5.27797 5.31545 5.35285 5.42794 5.45176 5.48182 5.59209 5.60987 5.69246 5.83211 6.38600 6.41850 6.89216 7.02545 7.17995 7.90054 8.40570 9.20157 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.020119 B = 0.002014 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.410172 B =13901.947809 C =14756.256375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.068 4.068 4 C 0.121 3.879 5 C -0.124 4.124 6 C -0.097 4.097 7 C 0.558 3.442 8 O -0.568 6.568 9 N -0.704 5.704 10 C 0.156 3.844 11 H 0.080 0.920 12 C -0.158 4.158 13 C -0.076 4.076 14 C -0.122 4.122 15 C 0.176 3.824 16 N -0.609 5.609 17 C -0.259 4.259 18 H 0.064 0.936 19 C -0.050 4.050 20 N -0.934 5.934 21 Si 0.962 3.038 22 H -0.268 1.268 23 H -0.290 1.290 24 H -0.294 1.294 25 C 0.140 3.860 26 C -0.116 4.116 27 C -0.143 4.143 28 C 0.100 3.900 29 N -0.481 5.481 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.145 0.855 38 H 0.410 0.590 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.070 0.930 45 H -0.005 1.005 46 H 0.053 0.947 47 H 0.249 0.751 48 H 0.011 0.989 49 H 0.052 0.948 50 H 0.078 0.922 51 H 0.066 0.934 52 H 0.161 0.839 53 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.508 -0.800 3.801 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.106 4.106 4 C -0.016 4.016 5 C -0.145 4.145 6 C -0.108 4.108 7 C 0.345 3.655 8 O -0.448 6.448 9 N -0.356 5.356 10 C 0.052 3.948 11 H 0.098 0.902 12 C -0.216 4.216 13 C -0.095 4.095 14 C -0.161 4.161 15 C 0.050 3.950 16 N -0.333 5.333 17 C -0.389 4.389 18 H 0.082 0.918 19 C -0.245 4.245 20 N -0.580 5.580 21 Si 0.791 3.209 22 H -0.193 1.193 23 H -0.217 1.217 24 H -0.222 1.222 25 C 0.014 3.986 26 C -0.155 4.155 27 C -0.163 4.163 28 C -0.057 4.057 29 N -0.191 5.191 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.163 0.837 38 H 0.249 0.751 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.013 0.987 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.029 0.971 49 H 0.071 0.929 50 H 0.097 0.903 51 H 0.084 0.916 52 H 0.178 0.822 53 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -25.263 -0.872 3.883 25.574 hybrid contribution 2.076 0.365 -0.050 2.109 sum -23.187 -0.507 3.833 23.507 Atomic orbital electron populations 1.21764 0.94369 1.02196 1.02380 1.21388 0.96604 0.95076 1.01981 1.20684 0.86557 0.99008 1.04363 1.21593 0.98055 0.92164 0.89816 1.22215 0.93284 0.99227 0.99790 1.20391 0.94740 0.99307 0.96380 1.18437 0.82581 0.80090 0.84401 1.90743 1.70543 1.45218 1.38289 1.46060 1.05316 1.52570 1.31637 1.20952 0.90894 0.91657 0.91282 0.90153 1.22186 1.01458 0.95260 1.02737 1.21192 0.92348 0.99482 0.96472 1.22090 0.96522 1.01125 0.96334 1.20604 0.90417 0.92365 0.91613 1.44321 1.14305 1.69253 1.05423 1.19535 0.91120 1.10877 1.17387 0.91795 1.25713 1.00385 0.96308 1.02102 1.70181 1.40394 1.16478 1.30973 0.85287 0.79332 0.78559 0.77752 1.19261 1.21652 1.22174 1.21051 0.93212 0.96969 0.87321 1.21940 0.95589 0.99621 0.98367 1.22613 1.02811 0.96666 0.94255 1.23257 0.88802 0.95845 0.97757 1.67412 1.10944 1.17207 1.23553 0.92139 0.92326 0.92082 0.92946 0.91824 0.89072 0.88937 0.83719 0.75147 0.91908 0.90583 0.93259 0.91515 0.92195 0.91199 0.98706 0.92820 0.94178 0.97096 0.92937 0.90331 0.91574 0.82186 0.79200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.76 16 2 C -0.11 -1.49 5.79 30.59 0.18 -1.31 16 3 C -0.07 -0.93 5.61 29.85 0.17 -0.76 16 4 C 0.12 2.24 6.18 42.55 0.26 2.51 16 5 C -0.12 -2.56 9.28 22.63 0.21 -2.35 16 6 C -0.10 -2.08 5.91 -19.88 -0.12 -2.19 16 7 C 0.56 14.17 7.76 86.88 0.67 14.84 16 8 O -0.57 -18.10 16.11 -3.77 -0.06 -18.16 16 9 N -0.70 -15.96 4.96 -445.12 -2.21 -18.17 16 10 C 0.16 3.91 2.40 44.99 0.11 4.02 16 11 H 0.08 2.16 7.58 -2.39 -0.02 2.14 16 12 C -0.16 -3.89 8.78 71.98 0.63 -3.25 16 13 C -0.08 -2.15 2.14 -10.77 -0.02 -2.17 16 14 C -0.12 -3.93 4.81 30.67 0.15 -3.78 16 15 C 0.18 7.89 5.31 86.36 0.46 8.35 16 16 N -0.61 -29.32 3.00 -699.07 -2.09 -31.41 16 17 C -0.26 -13.90 9.59 84.03 0.81 -13.10 16 18 H 0.06 3.38 7.89 -2.91 -0.02 3.36 16 19 C -0.05 -2.72 4.91 84.86 0.42 -2.31 16 20 N -0.93 -53.92 11.19 21.65 0.24 -53.67 16 21 Si 0.96 44.10 29.59 68.60 2.03 46.12 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 C 0.14 5.52 6.52 86.36 0.56 6.08 16 26 C -0.12 -3.51 4.97 30.67 0.15 -3.36 16 27 C -0.14 -2.38 9.62 22.63 0.22 -2.16 16 28 C 0.10 1.60 11.17 84.67 0.95 2.55 16 29 N -0.48 -9.23 9.84 -184.04 -1.81 -11.04 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.97 7.94 -2.39 -0.02 0.95 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.01 7.87 -2.39 -0.02 1.00 16 37 H 0.15 2.91 7.63 -2.91 -0.02 2.89 16 38 H 0.41 7.77 4.99 -92.70 -0.46 7.31 16 39 H 0.06 1.55 6.46 -2.39 -0.02 1.53 16 40 H 0.08 1.80 6.46 -2.39 -0.02 1.79 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.96 8.14 -2.38 -0.02 1.95 16 43 H 0.06 2.00 6.51 -2.39 -0.02 1.99 16 44 H 0.07 1.84 6.46 -2.39 -0.02 1.82 16 45 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 46 H 0.05 2.78 6.03 -2.39 -0.01 2.76 16 47 H 0.25 13.93 8.31 -92.71 -0.77 13.15 16 48 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 49 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 50 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.07 2.03 6.51 -2.39 -0.02 2.01 16 52 H 0.16 1.91 6.54 -2.91 -0.02 1.89 16 53 H 0.19 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -67.78 411.23 3.05 -64.73 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.44 Total: 20.76 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 6.51 Total: 0.85 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -5.87 Total: -114.30 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.06 Total: -18.16 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.78 3.05 -64.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997629273.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.915 kcal (2) G-P(sol) polarization free energy of solvation -67.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds