Wall clock time and date at job start Sat Apr 11 2020 07:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34485 * 125.57385 * 2 1 4 4 C 1.46693 * 106.32997 * 180.14317 * 3 2 1 5 5 C 1.47264 * 126.93870 * 179.83207 * 4 3 2 6 6 O 1.21628 * 120.00252 * 131.72307 * 5 4 3 7 7 N 1.34781 * 120.00029 * 311.71832 * 5 4 3 8 8 C 1.46919 * 120.62980 * 184.17616 * 7 5 4 9 9 C 1.53192 * 108.77521 * 126.41643 * 8 7 5 10 10 C 1.53045 * 109.31464 * 54.63204 * 9 8 7 11 11 C 1.53000 * 109.46003 * 178.62781 * 10 9 8 12 12 H 1.08999 * 109.87498 * 180.78463 * 11 10 9 13 13 C 1.54330 * 109.87939 * 59.60530 * 11 10 9 14 14 C 1.55155 * 102.93938 * 218.38834 * 13 11 10 15 15 C 1.54908 * 101.58552 * 35.50359 * 14 13 11 16 16 N 1.47018 * 109.88183 * 301.79959 * 11 10 9 17 17 C 1.36934 * 125.64892 * 298.39149 * 16 11 10 18 18 H 1.08001 * 120.00468 * 348.31641 * 17 16 11 19 19 C 1.38816 * 120.00303 * 168.32161 * 17 16 11 20 20 N 1.31625 * 119.99872 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00088 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47092 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46769 * 119.99862 * 21 19 17 24 24 H 1.48499 * 109.46800 * 239.99647 * 21 19 17 25 25 C 1.53034 * 109.53644 * 298.63386 * 10 9 8 26 26 C 1.46923 * 120.62652 * 4.19753 * 7 5 4 27 27 C 1.36769 * 106.11874 * 359.56756 * 4 3 2 28 28 C 1.50697 * 125.80230 * 180.28544 * 27 4 3 29 29 N 1.34661 * 108.39554 * 0.25855 * 27 4 3 30 30 H 0.96990 * 124.85144 * 180.02562 * 29 27 4 31 31 H 1.08995 * 109.47565 * 270.36909 * 1 2 3 32 32 H 1.09003 * 109.46682 * 30.36723 * 1 2 3 33 33 H 1.08996 * 109.46855 * 150.35977 * 1 2 3 34 34 H 1.07997 * 126.83692 * 359.97438 * 3 2 1 35 35 H 1.09003 * 109.59170 * 6.62599 * 8 7 5 36 36 H 1.09008 * 109.58727 * 246.19880 * 8 7 5 37 37 H 1.09002 * 109.49616 * 294.67684 * 9 8 7 38 38 H 1.08999 * 109.52442 * 174.59917 * 9 8 7 39 39 H 1.08998 * 109.45717 * 58.65766 * 10 9 8 40 40 H 1.08993 * 110.72281 * 336.75395 * 13 11 10 41 41 H 1.09000 * 110.71556 * 100.02567 * 13 11 10 42 42 H 1.09000 * 111.00561 * 277.43108 * 14 13 11 43 43 H 1.09000 * 111.00361 * 153.58213 * 14 13 11 44 44 H 1.08998 * 110.37079 * 204.14895 * 15 14 13 45 45 H 1.09000 * 110.45629 * 81.87405 * 15 14 13 46 46 H 0.96997 * 119.99832 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.49821 * 181.31606 * 25 10 9 48 48 H 1.08994 * 109.50101 * 301.41837 * 25 10 9 49 49 H 1.08997 * 109.59175 * 353.36933 * 26 7 5 50 50 H 1.09002 * 109.58767 * 113.80218 * 26 7 5 51 51 H 1.08999 * 109.47108 * 90.00125 * 28 27 4 52 52 H 1.09000 * 109.46987 * 209.99973 * 28 27 4 53 53 H 1.08995 * 109.46924 * 329.99821 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6104 -0.0035 5 6 4.8978 1.4300 -0.0083 6 8 5.7956 1.1871 0.7755 7 7 5.0228 2.4492 -0.8812 8 6 6.2723 3.2179 -0.9606 9 6 6.7551 3.2254 -2.4144 10 6 5.6359 3.7502 -3.3167 11 6 6.1262 3.7914 -4.7655 12 1 5.3386 4.1775 -5.4124 13 6 6.5371 2.3752 -5.2209 14 6 7.7949 2.6409 -6.0896 15 6 8.4500 3.8243 -5.3346 16 7 7.3189 4.6453 -4.8656 17 6 7.3707 5.9816 -4.5712 18 1 6.4570 6.5364 -4.4165 19 6 8.5975 6.6234 -4.4717 20 7 9.7111 5.9473 -4.6597 21 14 8.6682 8.4462 -4.0694 22 1 7.2887 8.9707 -3.9053 23 1 9.4274 8.6458 -2.8089 24 1 9.3446 9.1711 -5.1749 25 6 4.4211 2.8250 -3.2160 26 6 3.9118 2.8129 -1.7712 27 6 3.5998 -0.7553 0.0046 28 6 4.7721 -1.7021 0.0107 29 7 2.3007 -1.1100 0.0067 30 1 1.9757 -2.0237 0.0125 31 1 -0.3634 0.0066 1.0276 32 1 -0.3633 0.8867 -0.5196 33 1 -0.3633 -0.8932 -0.5082 34 1 1.9630 2.1233 -0.0004 35 1 7.0280 2.7535 -0.3270 36 1 6.0936 4.2410 -0.6296 37 1 7.0198 2.2117 -2.7151 38 1 7.6284 3.8714 -2.5049 39 1 5.3549 4.7545 -2.9998 40 1 6.7858 1.7511 -4.3627 41 1 5.7470 1.9173 -5.8160 42 1 7.5160 2.9303 -7.1028 43 1 8.4529 1.7720 -6.1003 44 1 9.0832 4.4008 -6.0092 45 1 9.0317 3.4606 -4.4876 46 1 10.5684 6.3957 -4.5898 47 1 3.6329 3.1863 -3.8766 48 1 4.7076 1.8151 -3.5091 49 1 3.1099 2.0813 -1.6726 50 1 3.5406 3.8030 -1.5065 51 1 5.0543 -1.9243 1.0398 52 1 4.4958 -2.6258 -0.4977 53 1 5.6142 -1.2411 -0.5055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004547763.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:40:23 Heat of formation + Delta-G solvation = 6.958478 kcal Electronic energy + Delta-G solvation = -31868.873344 eV Core-core repulsion = 27933.472879 eV Total energy + Delta-G solvation = -3935.400465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.34359 -40.92239 -39.64124 -37.61976 -34.70662 -33.75283 -33.55133 -32.59500 -31.43118 -31.11226 -29.99872 -29.08860 -26.64447 -26.14503 -24.89434 -24.34488 -23.06948 -22.18531 -21.62731 -21.32876 -20.15833 -19.14010 -18.56760 -17.98365 -17.15313 -16.96905 -16.63003 -16.35749 -16.10121 -15.69979 -15.56469 -15.29214 -14.99862 -14.62316 -14.49289 -14.33217 -14.06245 -13.97972 -13.84892 -13.66576 -13.51855 -13.45563 -13.28872 -13.02874 -12.92657 -12.86503 -12.79049 -12.77443 -12.58368 -12.42599 -12.14240 -11.96918 -11.80767 -11.72868 -11.45600 -11.26270 -11.18316 -10.90539 -10.83780 -10.61487 -9.72346 -9.52656 -8.90048 -8.71563 -7.78256 -5.12659 0.93049 1.45889 1.47085 1.48329 1.56202 1.93518 2.26891 2.42810 2.53175 3.39469 3.69220 3.72269 3.89461 3.93564 4.01086 4.12821 4.18697 4.24882 4.26560 4.30059 4.32961 4.38997 4.42089 4.53772 4.59375 4.66228 4.68324 4.71609 4.82056 4.86570 4.88592 4.90952 4.92343 4.98525 5.05152 5.08709 5.12016 5.17474 5.21864 5.23323 5.27192 5.30933 5.33815 5.56343 5.61536 5.67859 5.71813 5.75943 5.85180 5.85372 6.05924 6.32460 6.53914 6.70455 7.18384 7.25981 7.88465 8.55532 9.32134 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.002841 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.191160 B = 9854.205086 C =10120.093956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.028 3.972 3 C -0.187 4.187 4 C -0.252 4.252 5 C 0.585 3.415 6 O -0.597 6.597 7 N -0.598 5.598 8 C 0.120 3.880 9 C -0.099 4.099 10 C -0.083 4.083 11 C 0.159 3.841 12 H 0.035 0.965 13 C -0.114 4.114 14 C -0.138 4.138 15 C 0.177 3.823 16 N -0.609 5.609 17 C -0.217 4.217 18 H 0.077 0.923 19 C -0.066 4.066 20 N -0.949 5.949 21 Si 0.965 3.035 22 H -0.265 1.265 23 H -0.298 1.298 24 H -0.296 1.296 25 C -0.116 4.116 26 C 0.105 3.895 27 C 0.086 3.914 28 C -0.086 4.086 29 N -0.535 5.535 30 H 0.430 0.570 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.152 0.848 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.034 0.966 45 H -0.011 1.011 46 H 0.242 0.758 47 H 0.092 0.908 48 H 0.067 0.933 49 H 0.115 0.885 50 H 0.071 0.929 51 H 0.078 0.922 52 H 0.097 0.903 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.997 -17.669 5.998 28.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.211 4.211 4 C -0.262 4.262 5 C 0.376 3.624 6 O -0.479 6.479 7 N -0.329 5.329 8 C -0.003 4.003 9 C -0.137 4.137 10 C -0.104 4.104 11 C 0.052 3.948 12 H 0.053 0.947 13 C -0.151 4.151 14 C -0.177 4.177 15 C 0.052 3.948 16 N -0.333 5.333 17 C -0.347 4.347 18 H 0.095 0.905 19 C -0.258 4.258 20 N -0.599 5.599 21 Si 0.795 3.205 22 H -0.190 1.190 23 H -0.226 1.226 24 H -0.223 1.223 25 C -0.155 4.155 26 C -0.017 4.017 27 C -0.032 4.032 28 C -0.144 4.144 29 N -0.133 5.133 30 H 0.270 0.730 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.170 0.830 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.007 0.993 46 H 0.052 0.948 47 H 0.110 0.890 48 H 0.086 0.914 49 H 0.133 0.867 50 H 0.089 0.911 51 H 0.097 0.903 52 H 0.116 0.884 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.483 -17.725 6.404 28.578 hybrid contribution 1.181 1.295 0.359 1.789 sum -20.303 -16.430 6.763 26.979 Atomic orbital electron populations 1.20448 0.84948 1.04807 1.03730 1.20689 0.94882 0.85201 1.07466 1.21886 0.89413 0.98970 1.10833 1.20024 0.93013 0.93091 1.20092 1.18008 0.86099 0.79205 0.79046 1.90712 1.44223 1.71535 1.41423 1.48051 1.15285 1.32105 1.37473 1.21443 0.86286 0.95193 0.97400 1.21606 0.98625 1.00222 0.93286 1.21417 0.94606 0.98102 0.96235 1.21178 0.89096 0.90656 0.93826 0.94722 1.22611 0.97635 0.95703 0.99199 1.22884 0.97864 0.98278 0.98649 1.21199 0.89551 0.89785 0.94257 1.44731 1.06550 1.04954 1.77083 1.19284 0.92255 0.84543 1.38630 0.90537 1.25537 0.95395 1.01750 1.03159 1.70160 0.96752 1.35434 1.57566 0.85189 0.77682 0.80986 0.76645 1.18974 1.22592 1.22312 1.21903 0.97420 0.99872 0.96288 1.22137 0.88832 1.02040 0.88689 1.20224 0.86304 0.93427 1.03240 1.20399 0.92987 0.97491 1.03503 1.41424 1.04102 1.09711 1.58072 0.72971 0.90108 0.89005 0.89862 0.83038 0.91432 0.92117 0.92723 0.93462 0.93343 0.91420 0.89238 0.91848 0.90686 0.94720 0.99332 0.94805 0.88953 0.91385 0.86675 0.91102 0.90313 0.88417 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.41 71.24 0.74 0.25 16 2 C 0.03 0.38 7.13 40.98 0.29 0.68 16 3 C -0.19 -3.64 8.60 23.62 0.20 -3.44 16 4 C -0.25 -6.48 5.27 -19.04 -0.10 -6.58 16 5 C 0.59 19.40 7.20 86.62 0.62 20.02 16 6 O -0.60 -24.27 16.35 -4.12 -0.07 -24.34 16 7 N -0.60 -18.54 2.97 -822.95 -2.45 -20.99 16 8 C 0.12 4.29 6.42 86.36 0.55 4.84 16 9 C -0.10 -3.80 4.93 30.67 0.15 -3.64 16 10 C -0.08 -2.87 1.91 -10.77 -0.02 -2.89 16 11 C 0.16 6.10 2.95 45.34 0.13 6.23 16 12 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 13 C -0.11 -3.71 5.22 31.78 0.17 -3.54 16 14 C -0.14 -5.12 7.08 31.98 0.23 -4.89 16 15 C 0.18 8.81 5.47 86.85 0.47 9.28 16 16 N -0.61 -30.22 2.29 -668.25 -1.53 -31.75 16 17 C -0.22 -11.94 9.85 84.03 0.83 -11.11 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 19 C -0.07 -3.75 5.47 84.86 0.46 -3.29 16 20 N -0.95 -57.78 10.46 21.65 0.23 -57.55 16 21 Si 0.97 46.59 29.55 68.60 2.03 48.61 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 25 C -0.12 -2.94 5.10 30.67 0.16 -2.78 16 26 C 0.10 2.53 5.94 86.37 0.51 3.04 16 27 C 0.09 1.75 7.17 41.78 0.30 2.05 16 28 C -0.09 -1.55 10.07 71.23 0.72 -0.83 16 29 N -0.54 -6.99 5.90 -171.07 -1.01 -8.00 16 30 H 0.43 2.47 8.96 -92.72 -0.83 1.64 16 31 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.15 2.60 7.66 -2.91 -0.02 2.58 16 35 H 0.07 2.64 7.03 -2.39 -0.02 2.62 16 36 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.05 2.07 6.12 -2.39 -0.01 2.06 16 38 H 0.05 2.26 7.53 -2.39 -0.02 2.24 16 39 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 40 H 0.07 2.20 5.49 -2.39 -0.01 2.19 16 41 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.03 1.97 6.71 -2.39 -0.02 1.95 16 45 H -0.01 -0.62 8.11 -2.39 -0.02 -0.64 16 46 H 0.24 14.51 8.31 -92.71 -0.77 13.73 16 47 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.07 1.70 7.13 -2.39 -0.02 1.68 16 49 H 0.12 2.35 4.46 -2.39 -0.01 2.34 16 50 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 52 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.06 1.40 7.92 -2.39 -0.02 1.38 16 Total: -1.00 -76.07 404.07 3.71 -72.36 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.08 Total: 18.26 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.43 Total: 3.39 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -4.76 Total: -118.29 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.07 Total: -24.34 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -76.07 3.71 -72.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004547763.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.323 kcal (2) G-P(sol) polarization free energy of solvation -76.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds