Wall clock time and date at job start Sat Apr 11 2020 07:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47068 * 2 1 4 4 C 1.50703 * 109.47024 * 180.02562 * 3 2 1 5 5 N 1.34655 * 125.80260 * 265.18844 * 4 3 2 6 6 H 0.97004 * 124.85468 * 0.02562 * 5 4 3 7 7 C 1.36447 * 110.29868 * 180.28171 * 5 4 3 8 8 C 1.34488 * 108.85577 * 359.73164 * 7 5 4 9 9 C 1.36768 * 125.80100 * 85.00285 * 4 3 2 10 10 C 1.47263 * 126.94325 * 359.97438 * 9 4 3 11 11 O 1.21626 * 120.00261 * 29.27343 * 10 9 4 12 12 N 1.34777 * 120.00076 * 208.99847 * 10 9 4 13 13 C 1.47069 * 120.84686 * 355.98276 * 12 10 9 14 14 C 1.53136 * 109.04136 * 126.54821 * 13 12 10 15 15 C 1.53136 * 109.61845 * 54.00206 * 14 13 12 16 16 C 1.52824 * 109.26811 * 299.15346 * 15 14 13 17 17 H 1.09003 * 109.47487 * 301.99140 * 16 15 14 18 18 C 1.53065 * 110.33713 * 181.45651 * 16 15 14 19 19 N 1.46664 * 108.19475 * 183.89955 * 18 16 15 20 20 C 1.36938 * 120.73359 * 233.44306 * 19 18 16 21 21 H 1.07995 * 120.00172 * 33.75227 * 20 19 18 22 22 C 1.38811 * 119.99503 * 213.74202 * 20 19 18 23 23 N 1.31619 * 120.00522 * 18.92658 * 22 20 19 24 24 Si 1.86801 * 119.99891 * 198.92221 * 22 20 19 25 25 H 1.48503 * 109.47136 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47225 * 120.00601 * 24 22 20 27 27 H 1.48506 * 109.47328 * 240.00404 * 24 22 20 28 28 C 1.46863 * 118.79024 * 53.88018 * 19 18 16 29 29 C 1.53312 * 109.10298 * 306.93203 * 28 19 18 30 30 C 1.46717 * 120.84785 * 175.70987 * 12 10 9 31 31 H 1.08997 * 109.53512 * 114.82283 * 30 12 10 32 32 H 1.08996 * 109.47164 * 300.00077 * 1 2 3 33 33 H 1.09002 * 109.47509 * 59.99810 * 1 2 3 34 34 H 1.09003 * 109.46912 * 179.97438 * 1 2 3 35 35 H 1.09005 * 109.47095 * 240.00514 * 2 1 3 36 36 H 1.09002 * 109.47509 * 120.00190 * 2 1 3 37 37 H 1.08992 * 109.47303 * 60.00432 * 3 2 1 38 38 H 1.08997 * 109.47234 * 299.99963 * 3 2 1 39 39 H 1.08000 * 125.57273 * 179.74530 * 7 5 4 40 40 H 1.08007 * 126.83388 * 180.02562 * 8 7 5 41 41 H 1.09003 * 109.54389 * 246.41625 * 13 12 10 42 42 H 1.09003 * 109.54179 * 6.67951 * 13 12 10 43 43 H 1.09002 * 109.44335 * 174.04700 * 14 13 12 44 44 H 1.08999 * 109.44363 * 293.95874 * 14 13 12 45 45 H 1.09004 * 109.51107 * 59.09298 * 15 14 13 46 46 H 1.09002 * 109.50303 * 179.21935 * 15 14 13 47 47 H 1.09005 * 109.69328 * 304.27555 * 18 16 15 48 48 H 1.09001 * 109.69669 * 64.85311 * 18 16 15 49 49 H 0.96999 * 120.00656 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.53281 * 187.04741 * 28 19 18 51 51 H 1.09000 * 109.53781 * 66.81856 * 28 19 18 52 52 H 1.09004 * 109.55706 * 294.26262 * 29 28 19 53 53 H 1.09005 * 109.56103 * 173.94842 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3352 1.5339 1.0873 6 1 4.0142 1.6102 1.9995 7 6 5.6498 1.5097 0.7228 8 6 5.7279 1.3955 -0.6150 9 6 4.3466 1.3460 -1.1060 10 6 3.9091 1.2232 -2.5068 11 8 2.8510 1.7090 -2.8583 12 7 4.6840 0.5773 -3.4006 13 6 6.0085 0.0646 -3.0189 14 6 6.0904 -1.4224 -3.3755 15 6 5.7371 -1.6171 -4.8528 16 6 4.3098 -1.1295 -5.0985 17 1 3.6226 -1.6771 -4.4535 18 6 3.9181 -1.3464 -6.5622 19 7 2.5812 -0.7791 -6.7674 20 6 1.5767 -1.5340 -7.3117 21 1 1.5264 -2.5934 -7.1082 22 6 0.6229 -0.9374 -8.1247 23 7 0.8669 0.2325 -8.6763 24 14 -1.0072 -1.7949 -8.4363 25 1 -1.0339 -3.0877 -7.7061 26 1 -2.1187 -0.9339 -7.9583 27 1 -1.1651 -2.0444 -9.8917 28 6 2.3401 0.6188 -6.3872 29 6 2.7762 0.8254 -4.9321 30 6 4.2251 0.3624 -4.7775 31 1 4.8634 0.9171 -5.4652 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8900 37 1 1.6767 1.9563 0.8899 38 1 1.6766 1.9564 -0.8900 39 1 6.4903 1.5718 1.3981 40 1 6.6285 1.3489 -1.2094 41 1 6.7810 0.6121 -3.5590 42 1 6.1530 0.1908 -1.9459 43 1 7.1026 -1.7839 -3.1937 44 1 5.3888 -1.9829 -2.7577 45 1 6.4288 -1.0447 -5.4710 46 1 5.8095 -2.6744 -5.1080 47 1 4.6415 -0.8549 -7.2128 48 1 3.8922 -2.4139 -6.7812 49 1 0.2006 0.6492 -9.2448 50 1 1.2783 0.8451 -6.4850 51 1 2.9157 1.2778 -7.0372 52 1 2.1342 0.2417 -4.2723 53 1 2.7015 1.8821 -4.6752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021655730.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:40:46 Heat of formation + Delta-G solvation = 21.605906 kcal Electronic energy + Delta-G solvation = -32543.392764 eV Core-core repulsion = 28608.627460 eV Total energy + Delta-G solvation = -3934.765305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.37040 -41.18081 -38.86385 -37.36060 -35.89670 -34.60509 -33.92676 -32.57461 -31.21275 -31.03978 -30.71937 -27.35260 -27.18534 -26.04956 -24.36952 -23.95520 -23.01365 -22.43848 -21.87990 -21.15336 -20.93899 -19.23956 -18.67085 -18.35584 -17.08453 -16.88564 -16.56644 -16.31942 -15.95211 -15.71689 -15.54915 -15.39866 -15.17405 -14.98949 -14.82943 -14.55609 -14.28872 -14.08102 -13.84142 -13.75731 -13.65351 -13.48879 -13.26071 -13.10551 -12.87012 -12.73500 -12.69760 -12.32051 -12.23902 -12.17837 -12.15779 -12.03898 -11.93984 -11.69552 -11.63798 -11.59838 -11.36233 -11.03152 -10.56460 -9.99120 -9.64772 -9.37735 -9.02093 -8.63093 -7.89489 -5.40986 0.89188 1.41333 1.43920 1.54915 1.60489 2.06205 2.46490 2.47980 2.57562 3.23700 3.64290 3.74063 3.80395 3.89037 3.97422 3.99435 4.13220 4.16999 4.18911 4.33307 4.36041 4.40504 4.42883 4.55249 4.57828 4.63924 4.68072 4.74608 4.78906 4.85884 4.89982 4.91412 4.95243 4.97018 5.01541 5.05977 5.09368 5.16498 5.19320 5.22358 5.30950 5.33611 5.36367 5.39019 5.47778 5.51954 5.63209 5.68120 5.79925 5.86541 6.06973 6.38523 6.68434 6.76988 7.11621 7.47276 7.81910 8.38161 9.15357 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.003722 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.236796 B = 7520.934205 C = 8977.534874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.106 4.106 3 C -0.061 4.061 4 C 0.093 3.907 5 N -0.537 5.537 6 H 0.432 0.568 7 C 0.009 3.991 8 C -0.199 4.199 9 C -0.255 4.255 10 C 0.576 3.424 11 O -0.580 6.580 12 N -0.602 5.602 13 C 0.075 3.925 14 C -0.123 4.123 15 C -0.108 4.108 16 C -0.098 4.098 17 H 0.044 0.956 18 C 0.154 3.846 19 N -0.608 5.608 20 C -0.272 4.272 21 H 0.062 0.938 22 C -0.044 4.044 23 N -0.930 5.930 24 Si 0.964 3.036 25 H -0.265 1.265 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.181 3.819 29 C -0.100 4.100 30 C 0.166 3.834 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.058 0.942 35 H 0.029 0.971 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.213 0.787 40 H 0.171 0.829 41 H 0.078 0.922 42 H 0.134 0.866 43 H 0.107 0.893 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.018 0.982 48 H 0.056 0.944 49 H 0.251 0.749 50 H 0.033 0.967 51 H -0.004 1.004 52 H 0.033 0.967 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.331 0.399 25.796 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C -0.099 4.099 4 C -0.026 4.026 5 N -0.133 5.133 6 H 0.272 0.728 7 C -0.119 4.119 8 C -0.222 4.222 9 C -0.266 4.266 10 C 0.367 3.633 11 O -0.462 6.462 12 N -0.333 5.333 13 C -0.046 4.046 14 C -0.162 4.162 15 C -0.146 4.146 16 C -0.119 4.119 17 H 0.063 0.937 18 C 0.028 3.972 19 N -0.331 5.331 20 C -0.402 4.402 21 H 0.079 0.921 22 C -0.240 4.240 23 N -0.575 5.575 24 Si 0.792 3.208 25 H -0.189 1.189 26 H -0.218 1.218 27 H -0.211 1.211 28 C 0.055 3.945 29 C -0.139 4.139 30 C 0.063 3.937 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.229 0.771 40 H 0.188 0.812 41 H 0.096 0.904 42 H 0.151 0.849 43 H 0.126 0.874 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.036 0.964 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.052 0.948 51 H 0.014 0.986 52 H 0.052 0.948 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.696 0.733 25.647 29.084 hybrid contribution -1.502 -0.088 -0.889 1.747 sum 12.194 0.645 24.758 27.606 Atomic orbital electron populations 1.21747 0.94931 1.02068 1.01998 1.21354 0.96428 0.95418 1.01226 1.20337 0.87282 0.98212 1.04036 1.20170 0.93351 1.02544 0.86496 1.41566 1.06091 1.56932 1.08735 0.72845 1.22394 0.86246 1.06999 0.96287 1.22429 0.94867 1.10103 0.94845 1.20222 0.95591 1.19609 0.91138 1.18063 0.82836 0.77030 0.85335 1.90765 1.25629 1.50117 1.79679 1.48066 1.19121 1.56049 1.10075 1.22830 0.82455 0.94508 1.04778 1.21869 1.03181 0.95866 0.95235 1.21509 0.93855 1.01730 0.97549 1.21772 0.98041 0.94790 0.97299 0.93726 1.20973 0.85931 0.97134 0.93200 1.44221 1.07268 1.09923 1.71715 1.19438 1.04968 0.93066 1.22736 0.92081 1.25945 1.03465 0.98319 0.96271 1.70217 1.34505 1.19435 1.33301 0.85271 0.79833 0.78344 0.77388 1.18941 1.21802 1.21141 1.20623 0.97796 0.84816 0.91263 1.22279 0.94817 1.01058 0.95729 1.20831 0.94796 0.95837 0.82242 0.92313 0.90516 0.94428 0.92337 0.95159 0.90377 0.88423 0.91119 0.77053 0.81192 0.90396 0.84916 0.87449 0.92976 0.91007 0.90829 0.96371 0.92597 0.94048 0.94826 0.98611 0.94847 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.91 71.98 0.71 -2.55 16 2 C -0.11 -2.43 5.92 30.59 0.18 -2.25 16 3 C -0.06 -1.37 5.42 29.85 0.16 -1.21 16 4 C 0.09 2.04 6.42 41.78 0.27 2.31 16 5 N -0.54 -6.72 5.90 -182.72 -1.08 -7.80 16 6 H 0.43 2.27 8.96 -92.71 -0.83 1.44 16 7 C 0.01 0.10 11.89 83.12 0.99 1.09 16 8 C -0.20 -3.46 8.77 23.62 0.21 -3.26 16 9 C -0.26 -6.79 5.85 -19.04 -0.11 -6.90 16 10 C 0.58 20.40 7.46 86.62 0.65 21.05 16 11 O -0.58 -25.24 10.96 -4.11 -0.05 -25.28 16 12 N -0.60 -19.57 2.98 -800.15 -2.38 -21.95 16 13 C 0.07 1.63 5.68 86.32 0.49 2.12 16 14 C -0.12 -2.54 6.07 30.69 0.19 -2.35 16 15 C -0.11 -2.84 5.24 30.58 0.16 -2.68 16 16 C -0.10 -3.65 2.18 -10.88 -0.02 -3.68 16 17 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 18 C 0.15 6.90 5.86 86.37 0.51 7.41 16 19 N -0.61 -33.73 2.95 -699.93 -2.06 -35.80 16 20 C -0.27 -16.21 9.49 84.03 0.80 -15.42 16 21 H 0.06 3.56 7.90 -2.91 -0.02 3.54 16 22 C -0.04 -2.61 4.81 84.86 0.41 -2.20 16 23 N -0.93 -59.01 11.74 21.65 0.25 -58.75 16 24 Si 0.96 47.71 29.59 68.60 2.03 49.74 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 27 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 28 C 0.18 10.09 5.24 86.41 0.45 10.54 16 29 C -0.10 -4.79 3.81 30.66 0.12 -4.68 16 30 C 0.17 6.51 2.63 44.86 0.12 6.63 16 31 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 35 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 2.18 6.61 -2.39 -0.02 2.16 16 39 H 0.21 0.41 8.06 -2.91 -0.02 0.39 16 40 H 0.17 2.27 6.12 -2.91 -0.02 2.25 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 42 H 0.13 2.36 3.13 -2.39 -0.01 2.36 16 43 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 48 H 0.06 2.45 7.92 -2.39 -0.02 2.43 16 49 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 50 H 0.03 2.09 6.56 -2.39 -0.02 2.07 16 51 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 52 H 0.03 1.74 7.44 -2.39 -0.02 1.72 16 53 H 0.07 3.57 6.13 -2.38 -0.01 3.56 16 Total: -1.00 -81.62 397.37 3.06 -78.57 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.07 Total: 17.29 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 6.27 Total: 3.99 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -5.27 Total: -124.31 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.28 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -81.62 3.06 -78.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021655730.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.173 kcal (2) G-P(sol) polarization free energy of solvation -81.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds