Wall clock time and date at job start Sat Apr 11 2020 07:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46901 * 2 1 4 4 C 1.36778 * 125.79873 * 269.99695 * 3 2 1 5 5 C 1.47253 * 126.94288 * 359.97438 * 4 3 2 6 6 O 1.21629 * 120.00469 * 38.72211 * 5 4 3 7 7 N 1.34783 * 119.99892 * 218.72045 * 5 4 3 8 8 C 1.46942 * 120.84345 * 4.61881 * 7 5 4 9 9 C 1.53618 * 108.76998 * 125.93465 * 8 7 5 10 10 C 1.53119 * 109.40724 * 54.30166 * 9 8 7 11 11 C 1.52858 * 109.34806 * 299.22045 * 10 9 8 12 12 H 1.09003 * 109.25253 * 302.49887 * 11 10 9 13 13 C 1.52767 * 109.56777 * 182.83684 * 11 10 9 14 14 N 1.46899 * 109.18352 * 293.08376 * 13 11 10 15 15 C 1.36935 * 120.77264 * 126.67729 * 14 13 11 16 16 H 1.08006 * 119.99825 * 210.46286 * 15 14 13 17 17 C 1.38805 * 120.00545 * 30.45814 * 15 14 13 18 18 N 1.31626 * 119.99977 * 15.49353 * 17 15 14 19 19 Si 1.86798 * 120.00276 * 195.49388 * 17 15 14 20 20 H 1.48496 * 109.47133 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47035 * 119.99867 * 19 17 15 22 22 H 1.48500 * 109.47383 * 239.99694 * 19 17 15 23 23 C 1.46978 * 118.45056 * 306.64767 * 14 13 11 24 24 C 1.51558 * 109.37561 * 53.47258 * 23 14 13 25 25 C 1.47311 * 120.84533 * 184.89652 * 7 5 4 26 26 H 1.09006 * 110.07397 * 355.09542 * 25 7 5 27 27 C 1.46689 * 106.11115 * 180.02562 * 4 3 2 28 28 C 1.34483 * 106.33673 * 0.02562 * 27 4 3 29 29 N 1.34654 * 125.80466 * 89.69652 * 3 2 1 30 30 C 1.46508 * 124.84765 * 359.96057 * 29 3 2 31 31 H 1.09003 * 109.47373 * 59.99625 * 1 2 3 32 32 H 1.08996 * 109.46842 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46748 * 300.00022 * 1 2 3 34 34 H 1.08996 * 109.47020 * 119.99803 * 2 1 3 35 35 H 1.08997 * 109.46905 * 240.00233 * 2 1 3 36 36 H 1.08999 * 109.54561 * 245.84167 * 8 7 5 37 37 H 1.08998 * 109.54980 * 6.11770 * 8 7 5 38 38 H 1.09002 * 109.61679 * 294.25712 * 9 8 7 39 39 H 1.08999 * 109.39691 * 174.21809 * 9 8 7 40 40 H 1.09005 * 109.49367 * 179.25644 * 10 9 8 41 41 H 1.09008 * 109.49201 * 59.18195 * 10 9 8 42 42 H 1.08993 * 109.52039 * 52.99420 * 13 11 10 43 43 H 1.08991 * 109.51961 * 173.11649 * 13 11 10 44 44 H 0.96999 * 120.00126 * 179.97438 * 18 17 15 45 45 H 1.08998 * 109.60699 * 174.05513 * 23 14 13 46 46 H 1.08997 * 109.61016 * 294.39920 * 23 14 13 47 47 H 1.08997 * 110.30866 * 185.36686 * 24 23 14 48 48 H 1.09002 * 107.76267 * 65.95442 * 24 23 14 49 49 H 1.08000 * 126.83292 * 179.97438 * 27 4 3 50 50 H 1.07995 * 125.57539 * 180.02562 * 28 27 4 51 51 H 1.08996 * 109.47092 * 90.00237 * 30 29 3 52 52 H 1.08996 * 109.46717 * 210.00084 * 30 29 3 53 53 H 1.09001 * 109.46776 * 329.99611 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2990 2.1752 -1.1094 5 6 2.1540 1.7631 -2.5156 6 8 1.2114 1.0723 -2.8529 7 7 3.0657 2.1515 -3.4291 8 6 4.2640 2.9005 -3.0262 9 6 5.5062 2.1665 -3.5536 10 6 5.3689 1.9544 -5.0638 11 6 4.1323 1.1010 -5.3450 12 1 4.2200 0.1544 -4.8117 13 6 4.0297 0.8271 -6.8444 14 7 3.7539 2.0870 -7.5475 15 6 4.5451 2.4968 -8.5873 16 1 4.6839 3.5509 -8.7774 17 6 5.1689 1.5576 -9.3969 18 7 4.7747 0.3020 -9.3724 19 14 6.5677 2.0755 -10.5214 20 1 6.8177 3.5307 -10.3625 21 1 7.7957 1.3209 -10.1636 22 1 6.2024 1.7866 -11.9314 23 6 2.6085 2.8971 -7.1094 24 6 2.7179 3.1589 -5.6206 25 6 2.8833 1.8411 -4.8576 26 1 2.0008 1.2162 -4.9949 27 6 2.7599 3.4772 -0.6152 28 6 2.7345 3.4028 0.7273 29 7 2.2894 2.1655 1.0920 30 6 2.1199 1.7106 2.4744 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 4.2246 3.9052 -3.4468 37 1 4.3082 2.9604 -1.9388 38 1 5.5983 1.2001 -3.0579 39 1 6.3940 2.7652 -3.3501 40 1 6.2556 1.4454 -5.4418 41 1 5.2647 2.9200 -5.5588 42 1 4.9698 0.4081 -7.2031 43 1 3.2212 0.1204 -7.0310 44 1 5.2103 -0.3542 -9.9385 45 1 2.5994 3.8419 -7.6529 46 1 1.6824 2.3555 -7.3017 47 1 1.8289 3.6772 -5.2613 48 1 3.5944 3.7857 -5.4566 49 1 3.0607 4.3263 -1.2110 50 1 3.0147 4.1948 1.4059 51 1 3.0466 1.2548 2.8230 52 1 1.8723 2.5615 3.1090 53 1 1.3148 0.9773 2.5193 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021672872.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:40:56 Heat of formation + Delta-G solvation = 15.402488 kcal Electronic energy + Delta-G solvation = -32299.982183 eV Core-core repulsion = 28364.947878 eV Total energy + Delta-G solvation = -3935.034305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40424 -41.24530 -39.15722 -37.02345 -34.69504 -34.41884 -33.96545 -33.42992 -31.80356 -31.14610 -29.23609 -27.84345 -27.07424 -26.23565 -24.61222 -23.97364 -23.52627 -22.96131 -22.25068 -20.93247 -19.61087 -19.08090 -18.45024 -18.06676 -17.29197 -16.94501 -16.55296 -16.41814 -16.05867 -15.81775 -15.46127 -15.21793 -14.99506 -14.93436 -14.85915 -14.38417 -14.18576 -14.11691 -14.02979 -13.67357 -13.58662 -13.51365 -13.19936 -13.18873 -13.03731 -12.89638 -12.73193 -12.61901 -12.46026 -12.29119 -12.13104 -11.95119 -11.89949 -11.79105 -11.73103 -11.42690 -11.29224 -11.05111 -10.71883 -10.53113 -9.54349 -9.32889 -9.04118 -8.64438 -7.85294 -5.33682 0.90540 1.47551 1.49225 1.57823 1.60017 1.89764 2.23685 2.44521 2.52438 3.31068 3.62402 3.69995 3.73879 3.96629 3.98250 3.99852 4.05634 4.14329 4.16652 4.26466 4.36112 4.37584 4.40065 4.49968 4.53979 4.57635 4.60743 4.68829 4.74330 4.75315 4.77908 4.89299 4.91604 4.97992 5.00798 5.02301 5.05666 5.12472 5.12901 5.16039 5.22854 5.27204 5.32715 5.35029 5.46786 5.60537 5.68214 5.69354 5.73065 5.85517 6.17928 6.41403 6.44351 6.66253 7.15763 7.35909 7.84581 8.41149 9.22114 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.002791 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.924007 B =10030.328198 C =10411.620080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 C 0.087 3.913 4 C -0.256 4.256 5 C 0.582 3.418 6 O -0.594 6.594 7 N -0.599 5.599 8 C 0.105 3.895 9 C -0.124 4.124 10 C -0.095 4.095 11 C -0.103 4.103 12 H 0.050 0.950 13 C 0.192 3.808 14 N -0.599 5.599 15 C -0.254 4.254 16 H 0.070 0.930 17 C -0.050 4.050 18 N -0.938 5.938 19 Si 0.967 3.033 20 H -0.263 1.263 21 H -0.291 1.291 22 H -0.295 1.295 23 C 0.145 3.855 24 C -0.123 4.123 25 C 0.165 3.835 26 H 0.059 0.941 27 C -0.186 4.186 28 C -0.001 4.001 29 N -0.440 5.440 30 C 0.059 3.941 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.064 0.936 42 H 0.057 0.943 43 H -0.018 1.018 44 H 0.249 0.751 45 H 0.065 0.935 46 H 0.000 1.000 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.155 0.845 50 H 0.205 0.795 51 H 0.088 0.912 52 H 0.110 0.890 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.465 6.461 29.112 29.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 C -0.030 4.030 4 C -0.266 4.266 5 C 0.374 3.626 6 O -0.477 6.477 7 N -0.329 5.329 8 C -0.016 4.016 9 C -0.162 4.162 10 C -0.133 4.133 11 C -0.124 4.124 12 H 0.068 0.932 13 C 0.066 3.934 14 N -0.323 5.323 15 C -0.384 4.384 16 H 0.088 0.912 17 C -0.245 4.245 18 N -0.584 5.584 19 Si 0.795 3.205 20 H -0.187 1.187 21 H -0.217 1.217 22 H -0.222 1.222 23 C 0.019 3.981 24 C -0.162 4.162 25 C 0.062 3.938 26 H 0.078 0.922 27 C -0.210 4.210 28 C -0.128 4.128 29 N -0.115 5.115 30 C -0.081 4.081 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.131 0.869 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.000 1.000 44 H 0.058 0.942 45 H 0.084 0.916 46 H 0.018 0.982 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.173 0.827 50 H 0.222 0.778 51 H 0.107 0.893 52 H 0.128 0.872 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.919 5.928 29.221 29.878 hybrid contribution 0.410 -0.468 -1.612 1.728 sum -1.509 5.461 27.609 28.184 Atomic orbital electron populations 1.21627 0.93796 1.02391 1.01602 1.20119 0.96907 0.89179 1.03117 1.20250 1.01961 0.95023 0.85805 1.20094 1.17431 0.98419 0.90611 1.18026 0.80994 0.78180 0.85446 1.90704 1.34085 1.40979 1.81892 1.48269 1.22641 1.55766 1.06223 1.22201 0.82643 0.94660 1.02117 1.21993 0.98483 1.01043 0.94697 1.21335 0.95747 1.00039 0.96163 1.21775 0.95672 0.97837 0.97152 0.93197 1.20366 0.98193 0.86921 0.87941 1.44177 1.29876 1.22479 1.35730 1.19488 1.21791 0.91964 1.05158 0.91248 1.25880 1.03127 0.96152 0.99324 1.70208 1.42708 1.03016 1.42477 0.85214 0.79076 0.78270 0.77933 1.18659 1.21748 1.22242 1.20656 0.89041 0.95086 0.93307 1.21887 1.01950 0.96610 0.95779 1.20879 0.97210 0.96238 0.79504 0.92237 1.22177 1.07700 0.96567 0.94518 1.22246 1.05906 0.88668 0.95935 1.43737 1.49641 1.11354 1.06781 1.22425 1.04341 1.03284 0.78055 0.94483 0.91130 0.91573 0.88518 0.92228 0.90667 0.86886 0.92557 0.88503 0.93533 0.91688 0.92437 0.99981 0.94219 0.91640 0.98198 0.91500 0.90724 0.82746 0.77807 0.89308 0.87167 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.89 71.98 0.71 -2.11 16 2 C -0.06 -1.16 5.29 29.85 0.16 -1.00 16 3 C 0.09 1.96 6.14 41.79 0.26 2.21 16 4 C -0.26 -6.97 5.38 -19.04 -0.10 -7.07 16 5 C 0.58 20.49 7.33 86.61 0.64 21.12 16 6 O -0.59 -25.40 15.17 -4.12 -0.06 -25.46 16 7 N -0.60 -19.81 2.65 -797.05 -2.11 -21.92 16 8 C 0.11 2.67 5.11 86.50 0.44 3.11 16 9 C -0.12 -3.29 6.10 30.84 0.19 -3.10 16 10 C -0.10 -3.39 4.82 30.59 0.15 -3.24 16 11 C -0.10 -4.27 2.50 -10.87 -0.03 -4.30 16 12 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 13 C 0.19 9.86 4.64 86.23 0.40 10.26 16 14 N -0.60 -30.88 2.57 -702.99 -1.81 -32.68 16 15 C -0.25 -13.98 9.58 84.03 0.80 -13.18 16 16 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 17 C -0.05 -2.80 4.94 84.86 0.42 -2.38 16 18 N -0.94 -56.95 11.29 21.65 0.24 -56.71 16 19 Si 0.97 45.18 29.58 68.60 2.03 47.21 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 22 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 23 C 0.15 6.42 6.44 85.82 0.55 6.97 16 24 C -0.12 -4.55 4.96 30.18 0.15 -4.40 16 25 C 0.17 6.47 2.65 44.94 0.12 6.59 16 26 H 0.06 2.72 7.05 -2.38 -0.02 2.71 16 27 C -0.19 -3.70 8.67 23.62 0.20 -3.50 16 28 C 0.00 -0.01 11.34 83.11 0.94 0.93 16 29 N -0.44 -6.51 3.09 -533.18 -1.65 -8.15 16 30 C 0.06 0.32 10.61 127.77 1.36 1.68 16 31 H 0.04 1.04 7.54 -2.39 -0.02 1.02 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.06 8.08 -2.38 -0.02 1.04 16 34 H 0.10 1.37 7.59 -2.39 -0.02 1.35 16 35 H 0.06 1.62 7.63 -2.39 -0.02 1.60 16 36 H 0.08 1.76 7.25 -2.39 -0.02 1.74 16 37 H 0.11 2.44 4.60 -2.39 -0.01 2.43 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.06 2.46 6.16 -2.38 -0.01 2.45 16 42 H 0.06 3.26 6.21 -2.39 -0.01 3.25 16 43 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.84 16 45 H 0.07 2.75 7.94 -2.39 -0.02 2.73 16 46 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 47 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.07 2.61 5.40 -2.39 -0.01 2.60 16 49 H 0.15 2.67 7.36 -2.91 -0.02 2.65 16 50 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 51 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 52 H 0.11 0.10 8.13 -2.39 -0.02 0.08 16 53 H 0.09 0.42 7.44 -2.39 -0.02 0.40 16 Total: -1.00 -76.14 397.97 4.90 -71.24 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.89 Total: 17.87 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 7.36 Total: 8.61 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -5.32 Total: -119.47 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.06 Total: -25.46 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -76.14 4.90 -71.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021672872.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.641 kcal (2) G-P(sol) polarization free energy of solvation -76.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds