Wall clock time and date at job start Sat Apr 11 2020 07:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00209 * 3 2 1 5 5 H 1.48500 * 109.46628 * 29.99896 * 3 2 1 6 6 H 1.48493 * 109.47109 * 149.99555 * 3 2 1 7 7 C 1.37884 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99838 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21565 * 120.00159 * 0.02562 * 13 12 11 15 15 C 1.47766 * 120.00147 * 179.97438 * 13 12 11 16 16 C 1.39625 * 120.15108 * 359.73493 * 15 13 12 17 17 C 1.37905 * 119.86231 * 179.73866 * 16 15 13 18 18 S 1.76199 * 119.90751 * 180.26979 * 17 16 15 19 19 N 1.65597 * 107.22157 * 270.23500 * 18 17 16 20 20 O 1.42093 * 106.40315 * 23.77849 * 18 17 16 21 21 O 1.42104 * 106.39918 * 156.69431 * 18 17 16 22 22 C 1.38417 * 120.18125 * 0.50981 * 17 16 15 23 23 C 1.38265 * 120.31861 * 359.76229 * 22 17 16 24 24 C 1.38159 * 120.13163 * 359.97438 * 23 22 17 25 25 Cl 1.73597 * 120.09608 * 179.97438 * 24 23 22 26 26 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.46824 * 60.00052 * 9 7 2 28 28 H 1.08996 * 109.46811 * 299.99879 * 9 7 2 29 29 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 30 30 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 31 31 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 32 32 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 33 33 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 34 34 H 1.07992 * 120.07324 * 359.96973 * 16 15 13 35 35 H 0.97005 * 119.99647 * 0.02562 * 19 18 17 36 36 H 0.96998 * 120.00061 * 180.02562 * 19 18 17 37 37 H 1.08003 * 119.84194 * 179.74269 * 22 17 16 38 38 H 1.07999 * 119.93712 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 1.9829 -7.3714 0.0004 14 8 0.7877 -7.5935 0.0013 15 6 2.9430 -8.4946 -0.0008 16 6 4.3164 -8.2431 -0.0085 17 6 5.2073 -9.2958 -0.0041 18 16 6.9407 -8.9799 -0.0066 19 7 7.4209 -8.8929 -1.5890 20 8 7.1121 -7.6782 0.5369 21 8 7.5602 -10.1371 0.5378 22 6 4.7434 -10.6000 -0.0027 23 6 3.3849 -10.8576 -0.0008 24 6 2.4809 -9.8128 0.0003 25 17 0.7755 -10.1374 0.0020 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8902 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8895 30 1 2.8719 -3.6044 -0.8905 31 1 0.8531 -5.0451 -0.8897 32 1 0.8538 -5.0446 0.8903 33 1 3.3858 -5.9235 -0.0008 34 1 4.6804 -7.2264 -0.0140 35 1 6.7717 -9.0112 -2.3000 36 1 8.3513 -8.7238 -1.8049 37 1 5.4459 -11.4203 -0.0035 38 1 3.0298 -11.8775 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170902610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:29 Heat of formation + Delta-G solvation = -94.880785 kcal Electronic energy + Delta-G solvation = -24745.263900 eV Core-core repulsion = 20740.549429 eV Total energy + Delta-G solvation = -4004.714471 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59401 -38.74813 -37.59781 -36.89057 -36.27494 -35.52413 -33.67725 -33.48526 -32.26647 -31.71253 -30.91135 -26.94820 -24.68004 -23.89119 -22.95316 -20.99544 -20.64932 -19.83174 -18.93914 -17.86912 -17.62391 -17.04892 -16.66388 -16.30378 -15.98289 -15.68860 -15.55059 -15.10502 -14.92694 -14.44891 -14.40260 -13.73433 -13.50313 -13.29653 -12.65172 -12.61670 -12.53172 -12.35313 -12.30747 -12.18060 -11.89169 -11.77921 -11.65478 -11.36101 -10.98441 -10.91681 -10.76134 -10.60003 -9.90411 -9.83329 -9.81021 -9.70662 -9.41089 -9.14010 -8.89989 -8.38413 -6.03100 -4.06184 -0.25248 -0.00685 0.27690 1.61686 2.20819 2.65841 3.05560 3.09880 3.27902 3.30557 3.37115 3.40354 3.80334 4.05315 4.17948 4.43542 4.56343 4.61900 4.74636 5.02586 5.04107 5.23201 5.32905 5.37594 5.49553 5.65556 5.71699 5.85842 6.10278 6.32790 6.51279 6.54731 6.75144 6.95531 7.49102 7.61540 7.73308 7.95354 8.14396 8.36543 9.00479 9.58223 11.08191 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.010736 B = 0.002642 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.347406 B =10597.309051 C =13005.820315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.117 3.883 12 N -0.718 5.718 13 C 0.545 3.455 14 O -0.514 6.514 15 C -0.143 4.143 16 C 0.025 3.975 17 C -0.686 4.686 18 S 2.706 3.294 19 N -1.249 6.249 20 O -0.953 6.953 21 O -0.959 6.959 22 C 0.013 3.987 23 C -0.141 4.141 24 C 0.065 3.935 25 Cl -0.009 7.009 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.397 0.603 34 H 0.156 0.844 35 H 0.418 0.582 36 H 0.422 0.578 37 H 0.157 0.843 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.037 -26.212 -3.888 29.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.005 4.005 12 N -0.369 5.369 13 C 0.330 3.670 14 O -0.390 6.390 15 C -0.148 4.148 16 C 0.005 3.995 17 C -0.772 4.772 18 S 2.793 3.207 19 N -0.925 5.925 20 O -0.943 6.943 21 O -0.949 6.949 22 C -0.007 4.007 23 C -0.160 4.160 24 C 0.037 3.963 25 Cl 0.021 6.979 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.173 0.827 35 H 0.245 0.755 36 H 0.253 0.747 37 H 0.175 0.825 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.300 -26.152 -2.927 29.048 hybrid contribution 0.143 0.915 -0.695 1.158 sum 12.442 -25.237 -3.623 28.370 Atomic orbital electron populations 1.69966 1.06077 1.26716 1.50548 1.25031 0.94856 0.99333 0.95242 0.86574 0.79839 0.83375 0.78093 1.20664 1.21222 1.19830 1.21205 0.93035 0.90901 1.50970 0.92577 1.19020 0.93801 0.90803 0.97680 1.21925 0.99867 0.93194 1.01116 1.21738 0.91694 0.84684 1.02379 1.46181 1.11085 1.05621 1.74054 1.17927 0.87996 0.82799 0.78260 1.90890 1.15285 1.84243 1.48594 1.20088 0.94073 0.93500 1.07111 1.21160 0.91223 0.99187 0.87948 1.30690 1.25723 1.00204 1.20599 1.01574 0.72523 0.74215 0.72397 1.53023 1.20143 1.92838 1.26481 1.93652 1.84409 1.39790 1.76403 1.93618 1.73627 1.51112 1.76513 1.21113 0.95908 0.95074 0.88560 1.21252 0.92306 0.99284 1.03190 1.21480 0.88101 0.93290 0.93464 1.98468 1.09190 1.95130 1.95122 0.92919 0.96255 0.96238 0.92503 0.92582 0.91345 0.91333 0.76759 0.82668 0.75510 0.74693 0.82539 0.83012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.48 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.49 16 11 C 0.12 1.98 5.67 -4.04 -0.02 1.96 16 12 N -0.72 -9.91 5.51 -61.27 -0.34 -10.25 16 13 C 0.55 7.81 7.77 -12.37 -0.10 7.72 16 14 O -0.51 -8.93 13.97 5.31 0.07 -8.85 16 15 C -0.14 -1.60 5.88 -104.94 -0.62 -2.21 16 16 C 0.02 0.22 9.01 -39.19 -0.35 -0.13 16 17 C -0.69 -4.90 5.94 -39.64 -0.24 -5.14 16 18 S 2.71 18.62 6.28 -107.50 -0.67 17.95 16 19 N -1.25 -4.04 9.55 60.35 0.58 -3.46 16 20 O -0.95 -10.12 17.28 -57.17 -0.99 -11.11 16 21 O -0.96 -9.11 17.27 -57.17 -0.99 -10.10 16 22 C 0.01 0.08 9.51 -39.51 -0.38 -0.29 16 23 C -0.14 -1.00 9.82 -39.60 -0.39 -1.39 16 24 C 0.07 0.67 6.35 -39.07 -0.25 0.42 16 25 Cl -0.01 -0.11 26.02 -51.86 -1.35 -1.46 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.40 4.42 6.51 -40.82 -0.27 4.16 16 34 H 0.16 1.16 5.96 -52.49 -0.31 0.85 16 35 H 0.42 0.46 8.92 -34.47 -0.31 0.15 16 36 H 0.42 0.81 8.96 -34.47 -0.31 0.51 16 37 H 0.16 0.59 7.60 -52.48 -0.40 0.19 16 38 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 355.69 15.07 5.36 5.36 Total: -1.00 -37.54 355.69 -9.73 -47.27 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.09 Total: -1.44 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -3.03 Total: -14.36 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.98 Total: -39.67 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.90 Total: -30.06 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 18.62 SS G_CDS: -0.67 Total: 17.95 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.35 Total: -1.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.54 -9.73 -47.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170902610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.607 kcal (2) G-P(sol) polarization free energy of solvation -37.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds