Wall clock time and date at job start Sat Apr 11 2020 07:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00209 * 3 2 1 5 5 H 1.48500 * 109.46628 * 29.99896 * 3 2 1 6 6 H 1.48493 * 109.47109 * 149.99555 * 3 2 1 7 7 C 1.37884 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99838 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21565 * 120.00159 * 0.02562 * 13 12 11 15 15 C 1.47766 * 120.00147 * 179.97438 * 13 12 11 16 16 C 1.39625 * 120.15108 * 359.73493 * 15 13 12 17 17 C 1.37905 * 119.86231 * 179.73866 * 16 15 13 18 18 S 1.76199 * 119.90751 * 180.26979 * 17 16 15 19 19 N 1.65597 * 107.22157 * 270.23500 * 18 17 16 20 20 O 1.42093 * 106.40315 * 23.77849 * 18 17 16 21 21 O 1.42104 * 106.39918 * 156.69431 * 18 17 16 22 22 C 1.38417 * 120.18125 * 0.50981 * 17 16 15 23 23 C 1.38265 * 120.31861 * 359.76229 * 22 17 16 24 24 C 1.38159 * 120.13163 * 359.97438 * 23 22 17 25 25 Cl 1.73597 * 120.09608 * 179.97438 * 24 23 22 26 26 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.46824 * 60.00052 * 9 7 2 28 28 H 1.08996 * 109.46811 * 299.99879 * 9 7 2 29 29 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 30 30 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 31 31 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 32 32 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 33 33 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 34 34 H 1.07992 * 120.07324 * 359.96973 * 16 15 13 35 35 H 0.97005 * 119.99647 * 0.02562 * 19 18 17 36 36 H 0.96998 * 120.00061 * 180.02562 * 19 18 17 37 37 H 1.08003 * 119.84194 * 179.74269 * 22 17 16 38 38 H 1.07999 * 119.93712 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 1.9829 -7.3714 0.0004 14 8 0.7877 -7.5935 0.0013 15 6 2.9430 -8.4946 -0.0008 16 6 4.3164 -8.2431 -0.0085 17 6 5.2073 -9.2958 -0.0041 18 16 6.9407 -8.9799 -0.0066 19 7 7.4209 -8.8929 -1.5890 20 8 7.1121 -7.6782 0.5369 21 8 7.5602 -10.1371 0.5378 22 6 4.7434 -10.6000 -0.0027 23 6 3.3849 -10.8576 -0.0008 24 6 2.4809 -9.8128 0.0003 25 17 0.7755 -10.1374 0.0020 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8902 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8895 30 1 2.8719 -3.6044 -0.8905 31 1 0.8531 -5.0451 -0.8897 32 1 0.8538 -5.0446 0.8903 33 1 3.3858 -5.9235 -0.0008 34 1 4.6804 -7.2264 -0.0140 35 1 6.7717 -9.0112 -2.3000 36 1 8.3513 -8.7238 -1.8049 37 1 5.4459 -11.4203 -0.0035 38 1 3.0298 -11.8775 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170902610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:29 Heat of formation + Delta-G solvation = -124.957181 kcal Electronic energy + Delta-G solvation = -24746.568110 eV Core-core repulsion = 20740.549429 eV Total energy + Delta-G solvation = -4006.018681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49757 -39.69040 -38.26908 -37.69153 -36.99063 -36.94813 -35.26686 -34.02740 -33.51796 -32.39878 -32.26764 -28.67156 -25.85746 -24.69608 -24.29082 -22.35829 -21.90526 -20.49823 -19.75628 -18.53369 -18.35203 -18.26444 -17.82452 -17.26268 -16.81384 -16.73090 -16.54741 -16.42382 -15.94544 -15.67728 -15.64199 -14.76636 -14.54238 -14.24384 -14.00748 -13.77207 -13.49303 -13.29670 -13.23118 -13.20286 -13.03144 -12.93322 -12.75038 -12.61099 -12.48532 -12.36494 -12.08051 -11.68429 -11.53313 -11.32609 -11.22248 -10.74611 -10.55134 -10.54641 -10.42063 -10.12229 -8.19464 -6.30663 -0.88017 -0.63446 -0.39469 0.85981 1.42148 1.43379 1.44100 1.54485 1.96631 2.11129 2.28903 2.42619 2.67842 3.13803 3.14559 3.36615 3.55696 3.86702 3.90074 4.10998 4.16359 4.20384 4.38943 4.45751 4.54313 4.62885 4.77626 4.93292 4.94756 5.16275 5.26662 5.31082 5.34110 5.52142 5.70690 5.84417 6.22376 6.36028 6.39327 6.86859 7.05009 7.38984 8.92631 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.010736 B = 0.002642 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.347406 B =10597.309051 C =13005.820315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.105 4.105 11 C 0.132 3.868 12 N -0.710 5.710 13 C 0.544 3.456 14 O -0.551 6.551 15 C -0.163 4.163 16 C 0.025 3.975 17 C -0.679 4.679 18 S 2.733 3.267 19 N -1.234 6.234 20 O -0.991 6.991 21 O -0.983 6.983 22 C 0.028 3.972 23 C -0.131 4.131 24 C 0.051 3.949 25 Cl -0.032 7.032 26 H 0.263 0.737 27 H -0.006 1.006 28 H -0.008 1.008 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.412 0.588 34 H 0.165 0.835 35 H 0.430 0.570 36 H 0.431 0.569 37 H 0.190 0.810 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.032 -27.440 -4.442 32.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.143 4.143 11 C 0.008 3.992 12 N -0.363 5.363 13 C 0.331 3.669 14 O -0.430 6.430 15 C -0.168 4.168 16 C 0.005 3.995 17 C -0.765 4.765 18 S 2.820 3.180 19 N -0.915 5.915 20 O -0.980 6.980 21 O -0.972 6.972 22 C 0.008 3.992 23 C -0.151 4.151 24 C 0.022 3.978 25 Cl -0.002 7.002 26 H 0.072 0.928 27 H 0.012 0.988 28 H 0.010 0.990 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.250 0.750 34 H 0.183 0.817 35 H 0.260 0.740 36 H 0.265 0.735 37 H 0.207 0.793 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 15.343 -27.396 -3.495 31.594 hybrid contribution -0.733 1.200 -0.553 1.511 sum 14.610 -26.195 -4.047 30.266 Atomic orbital electron populations 1.70111 1.07926 1.27779 1.51736 1.26013 0.95734 1.03522 0.94793 0.85426 0.78685 0.78323 0.78487 1.19729 1.21107 1.18485 1.21690 0.93766 0.92035 1.50405 0.91555 1.18925 0.94387 0.92840 0.95141 1.21637 0.98556 0.91826 1.02287 1.21298 0.91726 0.84954 1.01213 1.45936 1.11332 1.04923 1.74106 1.18412 0.88164 0.83337 0.77035 1.90869 1.17081 1.84798 1.50254 1.19821 0.94250 0.92599 1.10083 1.21244 0.90323 1.00311 0.87588 1.30726 1.25381 1.00362 1.20041 1.00577 0.71760 0.72934 0.72724 1.52651 1.21029 1.92451 1.25340 1.93613 1.84894 1.41593 1.77923 1.93594 1.74062 1.51787 1.77727 1.21565 0.96040 0.95512 0.86040 1.21585 0.92071 0.99795 1.01602 1.21700 0.87516 0.93834 0.94711 1.98459 1.11205 1.95142 1.95391 0.92826 0.98761 0.98975 0.91470 0.91067 0.92471 0.92829 0.75026 0.81726 0.73961 0.73549 0.79296 0.80139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.11 13.29 21.45 0.28 -56.82 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.97 43.83 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.11 -4.01 5.27 30.59 0.16 -3.85 16 11 C 0.13 4.55 5.67 86.38 0.49 5.04 16 12 N -0.71 -19.48 5.51 -466.02 -2.57 -22.05 16 13 C 0.54 15.69 7.77 86.76 0.67 16.37 16 14 O -0.55 -19.81 13.97 -3.92 -0.05 -19.86 16 15 C -0.16 -3.50 5.88 -20.07 -0.12 -3.61 16 16 C 0.03 0.40 9.01 22.53 0.20 0.60 16 17 C -0.68 -7.82 5.94 22.23 0.13 -7.69 16 18 S 2.73 30.73 6.28 -56.49 -0.35 30.38 16 19 N -1.23 -4.31 9.55 37.02 0.35 -3.95 16 20 O -0.99 -19.27 17.28 -128.00 -2.21 -21.48 16 21 O -0.98 -15.97 17.27 -128.00 -2.21 -18.18 16 22 C 0.03 0.24 9.51 22.32 0.21 0.45 16 23 C -0.13 -1.48 9.82 22.26 0.22 -1.26 16 24 C 0.05 0.98 6.35 22.60 0.14 1.13 16 25 Cl -0.03 -0.75 26.02 -2.72 -0.07 -0.82 16 26 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 27 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 28 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.41 8.71 6.51 -92.71 -0.60 8.10 16 34 H 0.17 2.17 5.96 -2.91 -0.02 2.16 16 35 H 0.43 -0.47 8.92 -96.74 -0.86 -1.33 16 36 H 0.43 0.42 8.96 -96.75 -0.87 -0.44 16 37 H 0.19 0.49 7.60 -2.91 -0.02 0.47 16 38 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -82.84 355.69 -3.03 -85.87 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -1.19 Total: 2.05 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 2.96 Total: -20.99 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -1.93 Total: -82.83 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -4.48 Total: -59.52 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 30.73 SS G_CDS: -0.35 Total: 30.38 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.07 Total: -0.82 kcal Total: -82.84 -3.03 -85.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170902610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.085 kcal (2) G-P(sol) polarization free energy of solvation -82.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds