Wall clock time and date at job start Sat Apr 11 2020 07:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99841 * 2 1 4 4 H 1.48498 * 109.46643 * 269.99566 * 3 2 1 5 5 H 1.48500 * 109.47242 * 29.99320 * 3 2 1 6 6 H 1.48503 * 109.47155 * 149.99994 * 3 2 1 7 7 C 1.37882 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00037 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99729 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46635 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46994 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47504 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00406 * 180.02562 * 12 11 10 14 14 O 1.21555 * 119.99698 * 359.97438 * 13 12 11 15 15 C 1.47846 * 120.00148 * 179.97438 * 13 12 11 16 16 C 1.39590 * 120.14094 * 359.97438 * 15 13 12 17 17 C 1.37937 * 119.88555 * 180.02562 * 16 15 13 18 18 C 1.38362 * 120.15663 * 359.74195 * 17 16 15 19 19 S 1.76201 * 119.86091 * 180.27287 * 18 17 16 20 20 N 1.65605 * 107.21609 * 115.23900 * 19 18 17 21 21 O 1.42097 * 106.40580 * 228.77592 * 19 18 17 22 22 O 1.42103 * 106.40349 * 1.70063 * 19 18 17 23 23 C 1.38447 * 120.28232 * 0.51766 * 18 17 16 24 24 Cl 1.73599 * 119.94651 * 179.76446 * 23 18 17 25 25 C 1.38103 * 120.11372 * 359.47924 * 23 18 17 26 26 H 0.96994 * 120.00032 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46612 * 60.00498 * 9 7 2 28 28 H 1.08999 * 109.47286 * 300.00039 * 9 7 2 29 29 H 1.09000 * 109.47087 * 60.00329 * 10 9 7 30 30 H 1.09004 * 109.47492 * 300.00147 * 10 9 7 31 31 H 1.09005 * 109.47124 * 59.99657 * 11 10 9 32 32 H 1.09004 * 109.46944 * 300.00266 * 11 10 9 33 33 H 0.97003 * 119.99559 * 359.97438 * 12 11 10 34 34 H 1.08006 * 120.05621 * 0.03883 * 16 15 13 35 35 H 1.08005 * 119.92508 * 180.02562 * 17 16 15 36 36 H 0.96998 * 120.00065 * 359.97438 * 20 19 18 37 37 H 0.96998 * 120.00179 * 180.02562 * 20 19 18 38 38 H 1.07997 * 120.08301 * 180.23587 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5516 -2.6365 0.0001 12 7 6.0400 -4.0176 -0.0004 13 6 7.3650 -4.2639 0.0001 14 8 8.1549 -3.3400 0.0005 15 6 7.8579 -5.6578 0.0002 16 6 6.9534 -6.7210 0.0003 17 6 7.4190 -8.0195 0.0009 18 6 8.7798 -8.2699 -0.0040 19 16 9.3659 -9.9316 -0.0105 20 7 10.1607 -10.1654 -1.4444 21 8 10.3497 -10.0141 1.0115 22 8 8.2144 -10.7632 -0.0497 23 6 9.6828 -7.2205 0.0013 24 17 11.3882 -7.5448 0.0012 25 6 9.2292 -5.9161 0.0006 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6796 0.8895 28 1 3.8746 -0.6807 -0.8905 29 1 3.6579 -3.1505 -0.8897 30 1 3.6586 -3.1502 0.8903 31 1 5.9149 -2.1225 0.8901 32 1 5.9149 -2.1227 -0.8899 33 1 5.4096 -4.7549 -0.0003 34 1 5.8909 -6.5274 -0.0003 35 1 6.7198 -8.8426 0.0006 36 1 10.2254 -9.4414 -2.0867 37 1 10.5607 -11.0265 -1.6424 38 1 9.9341 -5.0979 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170905527.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:32 Heat of formation + Delta-G solvation = -96.467740 kcal Electronic energy + Delta-G solvation = -24407.497120 eV Core-core repulsion = 20402.713834 eV Total energy + Delta-G solvation = -4004.783286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.73783 -39.00495 -37.71752 -37.12306 -36.30906 -35.82253 -33.73879 -33.59399 -32.39772 -31.76083 -31.16174 -27.54480 -25.11801 -23.64191 -22.79341 -21.16180 -20.37649 -20.11793 -19.18445 -18.14812 -17.93187 -17.03537 -16.73134 -16.47582 -16.00532 -15.82272 -15.73232 -15.30461 -14.71434 -14.56620 -14.39203 -14.06225 -13.93054 -13.61328 -12.78672 -12.66728 -12.55262 -12.49354 -12.32073 -12.26191 -12.12011 -12.01809 -11.96373 -11.40968 -11.20553 -10.99142 -10.98315 -10.50050 -10.16078 -10.12991 -9.92592 -9.76588 -9.59613 -9.31139 -9.15626 -8.62108 -6.12662 -4.12050 -0.46592 -0.12215 0.41405 1.19692 2.05679 2.55081 2.87188 2.99453 3.14866 3.25957 3.34154 3.37206 3.73989 4.12842 4.23728 4.35185 4.38211 4.58764 4.61680 5.00898 5.09110 5.21088 5.25455 5.37379 5.45126 5.46560 5.48524 5.82744 5.86020 6.07249 6.29412 6.48020 6.48215 6.65034 7.12120 7.25756 7.26096 7.68267 7.89802 8.42731 8.90606 9.49161 11.00432 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.026095 B = 0.001917 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.754793 B =14605.796930 C =15480.170560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.112 3.888 12 N -0.712 5.712 13 C 0.546 3.454 14 O -0.526 6.526 15 C -0.056 4.056 16 C -0.104 4.104 17 C -0.009 4.009 18 C -0.657 4.657 19 S 2.701 3.299 20 N -1.246 6.246 21 O -0.943 6.943 22 O -0.957 6.957 23 C 0.040 3.960 24 Cl -0.030 7.030 25 C -0.073 4.073 26 H 0.264 0.736 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.401 0.599 34 H 0.149 0.851 35 H 0.164 0.836 36 H 0.417 0.583 37 H 0.423 0.577 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.345 -21.662 -3.449 31.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.010 4.010 12 N -0.363 5.363 13 C 0.331 3.669 14 O -0.404 6.404 15 C -0.060 4.060 16 C -0.123 4.123 17 C -0.029 4.029 18 C -0.744 4.744 19 S 2.787 3.213 20 N -0.922 5.922 21 O -0.932 6.932 22 O -0.946 6.946 23 C 0.012 3.988 24 Cl 0.000 7.000 25 C -0.093 4.093 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.033 0.967 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.237 0.763 34 H 0.167 0.833 35 H 0.181 0.819 36 H 0.244 0.756 37 H 0.254 0.746 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 22.663 -21.446 -2.581 31.308 hybrid contribution 0.185 1.286 -0.654 1.454 sum 22.848 -20.160 -3.235 30.642 Atomic orbital electron populations 1.69904 1.06320 1.27043 1.50726 1.25034 0.94761 0.99269 0.94410 0.86774 0.80379 0.83524 0.78597 1.20229 1.21317 1.18922 1.21068 0.89206 0.94536 1.51400 0.90982 1.19501 0.97388 0.91238 0.96745 1.21733 0.90207 1.01370 1.01926 1.21798 0.96508 0.80233 1.02478 1.46127 1.06079 1.10773 1.73352 1.18084 0.83178 0.87732 0.77886 1.90822 1.55302 1.45082 1.49154 1.20431 0.93748 0.94246 0.97534 1.21660 1.00652 0.91879 0.98147 1.20999 0.92616 0.98403 0.90837 1.30734 1.02077 1.22953 1.18588 1.01775 0.73912 0.72518 0.73102 1.52942 1.76365 1.24111 1.38789 1.93671 1.59510 1.84935 1.55130 1.93620 1.50870 1.64031 1.86105 1.20408 0.85890 0.93943 0.98587 1.98472 1.10259 1.95093 1.96184 1.21296 0.95520 0.95528 0.96985 0.92624 0.96237 0.96689 0.91939 0.91911 0.91207 0.91224 0.76327 0.83310 0.81895 0.75583 0.74584 0.82312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.52 -14.25 9.66 -34.44 -0.33 -14.59 16 8 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.11 -1.95 5.27 -26.73 -0.14 -2.09 16 11 C 0.11 1.65 5.67 -4.04 -0.02 1.63 16 12 N -0.71 -8.35 5.51 -61.25 -0.34 -8.69 16 13 C 0.55 6.85 7.77 -12.33 -0.10 6.75 16 14 O -0.53 -8.49 16.35 5.32 0.09 -8.40 16 15 C -0.06 -0.54 5.87 -104.97 -0.62 -1.16 16 16 C -0.10 -0.75 9.54 -39.19 -0.37 -1.13 16 17 C -0.01 -0.06 9.53 -39.65 -0.38 -0.44 16 18 C -0.66 -5.05 5.89 -39.46 -0.23 -5.29 16 19 S 2.70 20.07 5.60 -107.50 -0.60 19.47 16 20 N -1.25 -4.60 9.32 60.35 0.56 -4.04 16 21 O -0.94 -9.83 16.48 -57.17 -0.94 -10.78 16 22 O -0.96 -9.38 16.95 -57.17 -0.97 -10.35 16 23 C 0.04 0.34 6.29 -39.55 -0.25 0.09 16 24 Cl -0.03 -0.24 26.43 -51.86 -1.37 -1.61 16 25 C -0.07 -0.69 9.38 -39.14 -0.37 -1.05 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 28 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.40 3.50 6.51 -40.82 -0.27 3.24 16 34 H 0.15 0.70 6.40 -52.48 -0.34 0.37 16 35 H 0.16 0.84 7.32 -52.48 -0.38 0.46 16 36 H 0.42 0.80 8.92 -34.47 -0.31 0.50 16 37 H 0.42 0.75 8.96 -34.48 -0.31 0.44 16 38 H 0.16 1.48 7.65 -52.49 -0.40 1.08 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -36.51 352.60 -9.22 -45.73 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.05 Total: -0.98 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -3.02 Total: -15.83 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 1.00 Total: -39.06 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -1.82 Total: -29.52 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 16 Polarization: 20.07 SS G_CDS: -0.60 Total: 19.47 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.37 Total: -1.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.51 -9.22 -45.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170905527.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.735 kcal (2) G-P(sol) polarization free energy of solvation -36.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds