Wall clock time and date at job start Sat Apr 11 2020 07:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99841 * 2 1 4 4 H 1.48498 * 109.46643 * 269.99566 * 3 2 1 5 5 H 1.48500 * 109.47242 * 29.99320 * 3 2 1 6 6 H 1.48503 * 109.47155 * 149.99994 * 3 2 1 7 7 C 1.37882 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00037 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99729 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46635 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46994 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47504 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00406 * 180.02562 * 12 11 10 14 14 O 1.21555 * 119.99698 * 359.97438 * 13 12 11 15 15 C 1.47846 * 120.00148 * 179.97438 * 13 12 11 16 16 C 1.39590 * 120.14094 * 359.97438 * 15 13 12 17 17 C 1.37937 * 119.88555 * 180.02562 * 16 15 13 18 18 C 1.38362 * 120.15663 * 359.74195 * 17 16 15 19 19 S 1.76201 * 119.86091 * 180.27287 * 18 17 16 20 20 N 1.65605 * 107.21609 * 115.23900 * 19 18 17 21 21 O 1.42097 * 106.40580 * 228.77592 * 19 18 17 22 22 O 1.42103 * 106.40349 * 1.70063 * 19 18 17 23 23 C 1.38447 * 120.28232 * 0.51766 * 18 17 16 24 24 Cl 1.73599 * 119.94651 * 179.76446 * 23 18 17 25 25 C 1.38103 * 120.11372 * 359.47924 * 23 18 17 26 26 H 0.96994 * 120.00032 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46612 * 60.00498 * 9 7 2 28 28 H 1.08999 * 109.47286 * 300.00039 * 9 7 2 29 29 H 1.09000 * 109.47087 * 60.00329 * 10 9 7 30 30 H 1.09004 * 109.47492 * 300.00147 * 10 9 7 31 31 H 1.09005 * 109.47124 * 59.99657 * 11 10 9 32 32 H 1.09004 * 109.46944 * 300.00266 * 11 10 9 33 33 H 0.97003 * 119.99559 * 359.97438 * 12 11 10 34 34 H 1.08006 * 120.05621 * 0.03883 * 16 15 13 35 35 H 1.08005 * 119.92508 * 180.02562 * 17 16 15 36 36 H 0.96998 * 120.00065 * 359.97438 * 20 19 18 37 37 H 0.96998 * 120.00179 * 180.02562 * 20 19 18 38 38 H 1.07997 * 120.08301 * 180.23587 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5516 -2.6365 0.0001 12 7 6.0400 -4.0176 -0.0004 13 6 7.3650 -4.2639 0.0001 14 8 8.1549 -3.3400 0.0005 15 6 7.8579 -5.6578 0.0002 16 6 6.9534 -6.7210 0.0003 17 6 7.4190 -8.0195 0.0009 18 6 8.7798 -8.2699 -0.0040 19 16 9.3659 -9.9316 -0.0105 20 7 10.1607 -10.1654 -1.4444 21 8 10.3497 -10.0141 1.0115 22 8 8.2144 -10.7632 -0.0497 23 6 9.6828 -7.2205 0.0013 24 17 11.3882 -7.5448 0.0012 25 6 9.2292 -5.9161 0.0006 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6796 0.8895 28 1 3.8746 -0.6807 -0.8905 29 1 3.6579 -3.1505 -0.8897 30 1 3.6586 -3.1502 0.8903 31 1 5.9149 -2.1225 0.8901 32 1 5.9149 -2.1227 -0.8899 33 1 5.4096 -4.7549 -0.0003 34 1 5.8909 -6.5274 -0.0003 35 1 6.7198 -8.8426 0.0006 36 1 10.2254 -9.4414 -2.0867 37 1 10.5607 -11.0265 -1.6424 38 1 9.9341 -5.0979 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170905527.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:31 Heat of formation + Delta-G solvation = -125.850020 kcal Electronic energy + Delta-G solvation = -24408.771231 eV Core-core repulsion = 20402.713834 eV Total energy + Delta-G solvation = -4006.057398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.57195 -39.84122 -38.39599 -37.77882 -37.10987 -37.00120 -35.26096 -34.13302 -33.65732 -32.74256 -32.11488 -29.09066 -26.13636 -24.50273 -24.00158 -22.33581 -21.69602 -20.72403 -19.82099 -19.11055 -18.75139 -18.46538 -17.67541 -17.02476 -16.85208 -16.80813 -16.63685 -16.24212 -16.00295 -15.66175 -15.39039 -14.96805 -14.83549 -14.77817 -14.44346 -13.83406 -13.68486 -13.29317 -13.25679 -13.19012 -12.90707 -12.85941 -12.73524 -12.71364 -12.58855 -12.11341 -11.94630 -11.79829 -11.59799 -11.38284 -11.33253 -11.20384 -10.87586 -10.75576 -10.24292 -10.18889 -8.28703 -6.32423 -1.12627 -0.73552 -0.21266 0.55922 1.28083 1.37267 1.39414 1.50341 1.89624 2.01923 2.26773 2.36609 2.52110 3.07334 3.12877 3.34695 3.60181 3.74868 3.94229 3.97964 4.08973 4.19625 4.42907 4.46062 4.49340 4.63394 4.81668 4.87843 4.88142 5.03941 5.20227 5.22444 5.28247 5.48553 5.56436 5.65797 6.27842 6.28334 6.33831 6.76225 6.96599 7.32491 8.87517 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.026095 B = 0.001917 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.754793 B =14605.796930 C =15480.170560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.247 1.247 7 C -0.529 4.529 8 H 0.039 0.961 9 C -0.014 4.014 10 C -0.102 4.102 11 C 0.124 3.876 12 N -0.702 5.702 13 C 0.549 3.451 14 O -0.568 6.568 15 C -0.069 4.069 16 C -0.091 4.091 17 C -0.008 4.008 18 C -0.652 4.652 19 S 2.720 3.280 20 N -1.232 6.232 21 O -0.975 6.975 22 O -0.980 6.980 23 C 0.035 3.965 24 Cl -0.029 7.029 25 C -0.080 4.080 26 H 0.265 0.735 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.417 0.583 34 H 0.177 0.823 35 H 0.186 0.814 36 H 0.427 0.573 37 H 0.434 0.566 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.553 -22.465 -3.921 32.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.170 1.170 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.052 4.052 10 C -0.140 4.140 11 C 0.001 3.999 12 N -0.354 5.354 13 C 0.336 3.664 14 O -0.448 6.448 15 C -0.072 4.072 16 C -0.111 4.111 17 C -0.027 4.027 18 C -0.739 4.739 19 S 2.806 3.194 20 N -0.913 5.913 21 O -0.964 6.964 22 O -0.969 6.969 23 C 0.007 3.993 24 Cl 0.000 7.000 25 C -0.100 4.100 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.256 0.744 34 H 0.195 0.805 35 H 0.203 0.797 36 H 0.257 0.743 37 H 0.268 0.732 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 23.879 -22.298 -3.063 32.814 hybrid contribution -0.220 1.417 -0.535 1.530 sum 23.659 -20.881 -3.599 31.760 Atomic orbital electron populations 1.70055 1.08223 1.28081 1.52746 1.25990 0.95577 1.03441 0.94355 0.85715 0.79548 0.78602 0.79135 1.19289 1.21302 1.17017 1.21471 0.91943 0.93224 1.50069 0.94260 1.19477 0.94023 0.94771 0.96890 1.21502 0.91742 0.98184 1.02544 1.21431 0.94606 0.81811 1.02044 1.45895 1.06370 1.10161 1.72994 1.18413 0.82778 0.88511 0.76680 1.90803 1.56263 1.46606 1.51102 1.20196 0.94195 0.93120 0.99716 1.21939 1.01652 0.91170 0.96297 1.21324 0.92587 0.98952 0.89840 1.30794 1.02502 1.22618 1.17971 1.01014 0.73277 0.71906 0.73240 1.52600 1.75829 1.25160 1.37730 1.93640 1.60297 1.85346 1.57110 1.93596 1.51873 1.64731 1.86671 1.20373 0.86100 0.93755 0.99074 1.98472 1.10241 1.95027 1.96212 1.21288 0.95580 0.95817 0.97354 0.92576 0.96084 0.96108 0.91279 0.91438 0.91879 0.91647 0.74429 0.80545 0.79728 0.74293 0.73227 0.82939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.21 13.96 21.45 0.30 -57.91 16 2 C 0.00 0.18 5.47 84.66 0.46 0.65 16 3 Si 0.95 43.18 27.47 68.60 1.88 45.06 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16 7 C -0.53 -28.87 9.66 25.60 0.25 -28.63 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 10 C -0.10 -3.28 5.27 30.59 0.16 -3.12 16 11 C 0.12 3.43 5.67 86.38 0.49 3.92 16 12 N -0.70 -14.96 5.51 -465.97 -2.57 -17.52 16 13 C 0.55 13.02 7.77 86.79 0.67 13.69 16 14 O -0.57 -18.04 16.35 -3.89 -0.06 -18.10 16 15 C -0.07 -1.21 5.87 -20.09 -0.12 -1.33 16 16 C -0.09 -1.06 9.54 22.52 0.21 -0.85 16 17 C -0.01 -0.09 9.53 22.23 0.21 0.12 16 18 C -0.65 -8.79 5.89 22.35 0.13 -8.66 16 19 S 2.72 36.15 5.60 -56.49 -0.32 35.83 16 20 N -1.23 -6.81 9.32 37.02 0.35 -6.47 16 21 O -0.97 -19.34 16.48 -128.00 -2.11 -21.45 16 22 O -0.98 -17.45 16.95 -128.00 -2.17 -19.62 16 23 C 0.04 0.55 6.29 22.29 0.14 0.69 16 24 Cl -0.03 -0.44 26.43 -2.72 -0.07 -0.51 16 25 C -0.08 -1.43 9.38 22.55 0.21 -1.22 16 26 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 28 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.42 6.05 6.51 -92.71 -0.60 5.45 16 34 H 0.18 0.98 6.40 -2.91 -0.02 0.96 16 35 H 0.19 1.29 7.32 -2.91 -0.02 1.26 16 36 H 0.43 0.77 8.92 -96.74 -0.86 -0.10 16 37 H 0.43 0.72 8.96 -96.74 -0.87 -0.15 16 38 H 0.15 2.86 7.65 -2.91 -0.02 2.84 16 Total: -1.00 -79.31 352.60 -3.06 -82.37 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -1.24 Total: 3.52 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 2.95 Total: -25.20 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -1.92 Total: -81.90 kcal Atomic # 8 Polarization: -54.83 SS G_CDS: -4.34 Total: -59.17 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.06 kcal Atomic # 16 Polarization: 36.15 SS G_CDS: -0.32 Total: 35.83 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.07 Total: -0.51 kcal Total: -79.31 -3.06 -82.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170905527.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.482 kcal (2) G-P(sol) polarization free energy of solvation -79.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds