Wall clock time and date at job start Sat Apr 11 2020 07:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47286 * 2 1 4 4 H 1.08999 * 109.46669 * 305.26140 * 3 2 1 5 5 C 1.50696 * 109.47065 * 185.25946 * 3 2 1 6 6 H 1.08003 * 120.00282 * 245.24808 * 5 3 2 7 7 C 1.37879 * 120.00214 * 64.97512 * 5 3 2 8 8 N 1.31515 * 119.99928 * 6.91600 * 7 5 3 9 9 Si 1.86796 * 120.00405 * 186.91651 * 7 5 3 10 10 H 1.48502 * 109.47168 * 93.76910 * 9 7 5 11 11 H 1.48492 * 109.47362 * 213.76887 * 9 7 5 12 12 H 1.48500 * 109.47119 * 333.77259 * 9 7 5 13 13 N 1.46501 * 109.47114 * 65.25769 * 3 2 1 14 14 C 1.34770 * 119.99859 * 275.00329 * 13 3 2 15 15 O 1.21558 * 120.00722 * 359.97438 * 14 13 3 16 16 C 1.47767 * 119.99730 * 180.02562 * 14 13 3 17 17 C 1.39632 * 120.15879 * 359.72467 * 16 14 13 18 18 C 1.37893 * 119.87052 * 179.72030 * 17 16 14 19 19 S 1.76198 * 119.91316 * 180.27404 * 18 17 16 20 20 N 1.65601 * 107.21606 * 270.28240 * 19 18 17 21 21 O 1.42102 * 106.40088 * 23.81604 * 19 18 17 22 22 O 1.42092 * 106.40640 * 156.74049 * 19 18 17 23 23 C 1.38426 * 120.17840 * 0.55260 * 18 17 16 24 24 C 1.38271 * 120.31990 * 359.72424 * 23 18 17 25 25 C 1.38155 * 120.12573 * 359.97438 * 24 23 18 26 26 Cl 1.73605 * 120.08718 * 179.97438 * 25 24 23 27 27 H 1.09002 * 109.47414 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47396 * 300.00321 * 1 2 3 29 29 H 1.09005 * 109.47102 * 59.99755 * 1 2 3 30 30 H 1.09004 * 109.47019 * 239.99811 * 2 1 3 31 31 H 1.09005 * 109.47102 * 120.00245 * 2 1 3 32 32 H 0.96995 * 120.00658 * 180.02562 * 8 7 5 33 33 H 0.97000 * 119.99561 * 94.99925 * 13 3 2 34 34 H 1.08004 * 120.06209 * 359.97438 * 17 16 14 35 35 H 0.97005 * 120.00045 * 150.00381 * 20 19 18 36 36 H 0.97002 * 120.00262 * 329.99569 * 20 19 18 37 37 H 1.08003 * 119.83902 * 179.69272 * 23 18 17 38 38 H 1.08001 * 119.93669 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9828 -0.8391 5 6 3.5414 1.4444 -0.1302 6 1 4.1533 1.8106 0.6809 7 6 4.1340 0.9735 -1.2826 8 7 3.3917 0.6503 -2.3190 9 14 5.9913 0.7946 -1.3720 10 1 6.3735 -0.5915 -1.0005 11 1 6.4502 1.0809 -2.7549 12 1 6.6266 1.7521 -0.4314 13 7 1.6578 2.0956 1.2544 14 6 0.4410 2.6623 1.3756 15 8 -0.3392 2.6320 0.4439 16 6 0.0558 3.3215 2.6407 17 6 0.9476 3.3543 3.7146 18 6 0.5840 3.9761 4.8904 19 16 1.7112 4.0244 6.2438 20 7 1.4405 2.6688 7.1557 21 8 3.0114 3.8813 5.6885 22 8 1.3268 5.1317 7.0470 23 6 -0.6663 4.5575 5.0124 24 6 -1.5575 4.5246 3.9558 25 6 -1.2044 3.9104 2.7697 26 17 -2.3245 3.8690 1.4440 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8085 0.3187 -3.1297 33 1 2.2805 2.1201 1.9978 34 1 1.9217 2.8970 3.6230 35 1 2.1685 2.2671 7.6555 36 1 0.5540 2.2766 7.1903 37 1 -0.9472 5.0388 5.9376 38 1 -2.5316 4.9798 4.0579 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184160909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:38 Heat of formation + Delta-G solvation = -115.209148 kcal Electronic energy + Delta-G solvation = -26043.287930 eV Core-core repulsion = 22037.691955 eV Total energy + Delta-G solvation = -4005.595975 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.39214 -39.65641 -38.28557 -37.60723 -36.95768 -36.88686 -34.42401 -34.03485 -33.38136 -32.30335 -31.97860 -28.94592 -25.68740 -24.75272 -24.35346 -22.43323 -21.25432 -20.58840 -19.91140 -18.56383 -18.31467 -18.09579 -17.68583 -17.18355 -16.89826 -16.73958 -16.36429 -16.06003 -15.81475 -15.52012 -14.90001 -14.62312 -14.57482 -13.99835 -13.73449 -13.42443 -13.30358 -13.24910 -13.22643 -13.19921 -13.02100 -12.92535 -12.87071 -12.64301 -12.37820 -12.17198 -12.09965 -12.01665 -11.59034 -11.31505 -11.08258 -10.57499 -10.45734 -10.38853 -10.35116 -9.65968 -8.19125 -6.32884 -0.81099 -0.58885 -0.30982 0.93784 1.44378 1.45286 1.55702 1.59544 2.16938 2.29283 2.43494 2.50197 2.71600 3.12917 3.23198 3.47012 3.63325 3.97526 3.99147 4.19485 4.45837 4.48094 4.52632 4.54582 4.67335 4.72108 4.85064 5.06511 5.24625 5.30936 5.34534 5.42090 5.50334 5.59764 5.75424 5.88587 6.07358 6.39126 6.74856 6.88221 7.31092 7.47189 8.89001 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.004044 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.898910 B = 6922.172360 C = 9029.590691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 C 0.279 3.721 4 H 0.008 0.992 5 C -0.550 4.550 6 H 0.070 0.930 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.701 5.701 14 C 0.533 3.467 15 O -0.550 6.550 16 C -0.161 4.161 17 C 0.021 3.979 18 C -0.681 4.681 19 S 2.734 3.266 20 N -1.230 6.230 21 O -0.992 6.992 22 O -0.978 6.978 23 C 0.021 3.979 24 C -0.131 4.131 25 C 0.048 3.952 26 Cl -0.033 7.033 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.027 0.973 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.265 0.735 33 H 0.399 0.601 34 H 0.156 0.844 35 H 0.432 0.568 36 H 0.431 0.569 37 H 0.193 0.807 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.219 4.517 21.969 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.152 4.152 3 C 0.176 3.824 4 H 0.026 0.974 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.790 3.210 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.350 5.350 14 C 0.319 3.681 15 O -0.429 6.429 16 C -0.166 4.166 17 C 0.001 3.999 18 C -0.767 4.767 19 S 2.820 3.180 20 N -0.910 5.910 21 O -0.981 6.981 22 O -0.967 6.967 23 C 0.002 3.998 24 C -0.150 4.150 25 C 0.020 3.980 26 Cl -0.003 7.003 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.235 0.765 34 H 0.174 0.826 35 H 0.265 0.735 36 H 0.262 0.738 37 H 0.210 0.790 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.190 5.222 21.008 23.517 hybrid contribution 0.513 -0.841 -1.021 1.419 sum -8.676 4.381 19.987 22.225 Atomic orbital electron populations 1.21671 0.96576 0.99298 1.00499 1.21703 0.94120 0.98772 1.00574 1.18423 0.93768 0.89237 0.80981 0.97448 1.21551 0.91405 1.43522 1.02381 0.91219 1.25703 1.02966 0.94653 0.94681 1.70106 1.37298 1.44006 1.03810 0.85448 0.79508 0.78813 0.77280 1.19639 1.21329 1.18952 1.46254 1.14980 1.55886 1.17910 1.18425 0.82707 0.79371 0.87573 1.90831 1.51213 1.59894 1.40982 1.20034 0.95699 1.05083 0.95748 1.21172 0.98034 0.90815 0.89872 1.30877 1.14530 1.14386 1.16912 1.00584 0.71822 0.73110 0.72528 1.52704 1.22463 1.50011 1.65826 1.93602 1.38804 1.86413 1.79297 1.93598 1.83583 1.51878 1.67644 1.21569 0.88917 0.89476 0.99817 1.21584 1.03106 1.00258 0.90080 1.21689 0.90136 0.94985 0.91186 1.98446 1.59223 1.96255 1.46391 0.93463 0.93548 0.95392 0.92602 0.93369 0.92618 0.76497 0.82638 0.73481 0.73820 0.79016 0.80046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.52 71.98 0.61 -4.75 16 2 C -0.11 -5.38 5.49 30.60 0.17 -5.21 16 3 C 0.28 14.14 2.11 44.24 0.09 14.23 16 4 H 0.01 0.46 7.55 -2.39 -0.02 0.44 16 5 C -0.55 -29.13 8.67 25.60 0.22 -28.91 16 6 H 0.07 3.50 7.73 -2.91 -0.02 3.48 16 7 C 0.02 1.11 5.20 84.65 0.44 1.55 16 8 N -0.91 -52.58 12.00 21.45 0.26 -52.32 16 9 Si 0.96 42.37 29.54 68.60 2.03 44.40 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 13 N -0.70 -28.93 4.97 -449.07 -2.23 -31.17 16 14 C 0.53 21.03 6.34 86.76 0.55 21.58 16 15 O -0.55 -24.97 11.11 -3.90 -0.04 -25.01 16 16 C -0.16 -4.81 5.88 -20.07 -0.12 -4.92 16 17 C 0.02 0.50 9.01 22.52 0.20 0.71 16 18 C -0.68 -11.78 5.97 22.23 0.13 -11.65 16 19 S 2.73 42.52 6.28 -56.49 -0.35 42.17 16 20 N -1.23 -8.44 9.52 37.02 0.35 -8.08 16 21 O -0.99 -23.88 17.28 -128.00 -2.21 -26.09 16 22 O -0.98 -19.24 17.27 -128.00 -2.21 -21.45 16 23 C 0.02 0.29 9.51 22.32 0.21 0.50 16 24 C -0.13 -2.16 9.82 22.26 0.22 -1.94 16 25 C 0.05 1.26 6.35 22.60 0.14 1.40 16 26 Cl -0.03 -0.97 26.02 -2.72 -0.07 -1.05 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 1.94 5.64 -2.39 -0.01 1.93 16 29 H 0.03 1.32 7.86 -2.38 -0.02 1.30 16 30 H 0.06 2.98 6.65 -2.39 -0.02 2.97 16 31 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.40 14.21 6.56 -92.71 -0.61 13.60 16 34 H 0.16 3.56 5.96 -2.91 -0.02 3.55 16 35 H 0.43 1.83 8.96 -96.74 -0.87 0.96 16 36 H 0.43 0.72 8.96 -96.74 -0.87 -0.15 16 37 H 0.19 1.18 7.60 -2.91 -0.02 1.16 16 38 H 0.18 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -77.92 344.33 -2.79 -80.71 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -1.18 Total: 15.30 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 2.88 Total: -17.41 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -1.62 Total: -91.57 kcal Atomic # 8 Polarization: -68.09 SS G_CDS: -4.47 Total: -72.56 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 42.52 SS G_CDS: -0.35 Total: 42.17 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.07 Total: -1.05 kcal Total: -77.92 -2.79 -80.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184160909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.497 kcal (2) G-P(sol) polarization free energy of solvation -77.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds