Wall clock time and date at job start Sat Apr 11 2020 07:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47207 * 2 1 4 4 H 1.08999 * 109.46868 * 55.00595 * 3 2 1 5 5 C 1.50699 * 109.47061 * 175.00067 * 3 2 1 6 6 H 1.07999 * 120.00056 * 120.00101 * 5 3 2 7 7 C 1.37880 * 120.00172 * 300.00389 * 5 3 2 8 8 N 1.31522 * 119.99779 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00169 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46977 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46892 * 119.99902 * 9 7 5 12 12 H 1.48502 * 109.47134 * 239.99840 * 9 7 5 13 13 O 1.45196 * 109.46964 * 295.00396 * 3 2 1 14 14 C 1.34718 * 117.00175 * 90.00337 * 13 3 2 15 15 O 1.21483 * 119.99871 * 359.97438 * 14 13 3 16 16 C 1.47644 * 119.99816 * 180.27300 * 14 13 3 17 17 C 1.39675 * 120.16458 * 359.44089 * 16 14 13 18 18 C 1.37882 * 119.86564 * 179.76586 * 17 16 14 19 19 S 1.76199 * 119.90846 * 180.23086 * 18 17 16 20 20 C 1.81393 * 104.45167 * 270.28096 * 19 18 17 21 21 O 1.42095 * 104.27586 * 26.35792 * 19 18 17 22 22 O 1.42107 * 104.27386 * 154.21336 * 19 18 17 23 23 C 1.38441 * 120.18145 * 0.51818 * 18 17 16 24 24 C 1.38269 * 120.32810 * 359.73574 * 23 18 17 25 25 C 1.38142 * 120.14003 * 0.02562 * 24 23 18 26 26 Cl 1.73600 * 120.09785 * 179.97438 * 25 24 23 27 27 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46843 * 299.99589 * 1 2 3 29 29 H 1.09000 * 109.47031 * 59.99386 * 1 2 3 30 30 H 1.09000 * 109.46843 * 240.00411 * 2 1 3 31 31 H 1.09000 * 109.47031 * 120.00614 * 2 1 3 32 32 H 0.96997 * 120.00070 * 180.02562 * 8 7 5 33 33 H 1.08005 * 120.06902 * 0.02562 * 17 16 14 34 34 H 1.09004 * 109.47209 * 60.00086 * 20 19 18 35 35 H 1.08995 * 109.47431 * 179.97438 * 20 19 18 36 36 H 1.09002 * 109.47266 * 300.00245 * 20 19 18 37 37 H 1.07996 * 119.83124 * 179.71553 * 23 18 17 38 38 H 1.07997 * 119.92761 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0051 0.8798 1.3810 10 1 6.5989 1.5440 0.1930 11 1 6.4001 1.6154 2.6091 12 1 6.4962 -0.5192 1.4625 13 8 1.6558 2.0917 -1.2406 14 6 0.4684 2.7278 -1.2559 15 8 -0.2273 2.7395 -0.2600 16 6 0.0096 3.4052 -2.4849 17 6 0.8091 3.3986 -3.6302 18 6 0.3724 4.0290 -4.7761 19 16 1.3774 4.0161 -6.2233 20 6 2.4149 5.4958 -6.0672 21 8 2.1638 2.8397 -6.0934 22 8 0.4536 4.1654 -7.2927 23 6 -0.8508 4.6771 -4.7908 24 6 -1.6462 4.6930 -3.6599 25 6 -1.2241 4.0616 -2.5061 26 17 -2.2233 4.0828 -1.0866 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8292 -0.0606 2.9502 33 1 1.7656 2.8971 -3.6195 34 1 3.0110 5.4273 -5.1572 35 1 3.0768 5.5682 -6.9301 36 1 1.7805 6.3810 -6.0201 37 1 -1.1852 5.1730 -5.6900 38 1 -2.5991 5.2009 -3.6785 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188012739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:40 Heat of formation + Delta-G solvation = -128.372971 kcal Electronic energy + Delta-G solvation = -26064.876185 eV Core-core repulsion = 22026.416633 eV Total energy + Delta-G solvation = -4038.459552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.052 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22470 -38.81799 -37.34342 -36.63387 -36.16734 -35.78270 -33.57577 -31.86177 -31.43311 -31.20065 -29.79032 -27.35489 -24.71163 -23.50781 -23.10185 -21.39226 -19.78238 -19.05484 -18.27914 -16.99574 -16.73227 -16.71629 -16.41625 -16.11516 -15.49504 -15.43652 -15.18754 -14.54383 -14.28960 -13.83713 -13.62754 -13.50749 -13.19116 -12.91602 -12.87009 -12.37119 -12.31506 -12.14750 -12.03225 -11.87347 -11.54370 -11.46905 -11.34776 -11.31471 -11.14205 -10.98366 -10.96222 -10.66892 -10.27777 -9.78276 -9.54254 -9.44336 -9.36737 -9.34669 -8.83540 -8.48156 -6.21140 -4.28277 -0.25686 0.23625 0.66208 1.87885 2.49209 2.63059 3.21974 3.26685 3.31351 3.40644 3.46506 3.68135 3.83167 4.28157 4.32142 4.46128 4.55798 4.61781 4.92676 5.00200 5.11140 5.24036 5.33280 5.43816 5.55448 5.58480 5.90910 6.22472 6.23585 6.29846 6.44479 6.84198 6.93834 7.14468 7.18589 7.58283 7.70543 7.88112 8.11697 8.52367 8.82864 9.36903 10.85649 Molecular weight = 346.05amu Principal moments of inertia in cm(-1) A = 0.010470 B = 0.004009 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.773932 B = 6981.801133 C = 8933.875020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.050 0.950 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.349 6.349 14 C 0.489 3.511 15 O -0.486 6.486 16 C -0.125 4.125 17 C 0.043 3.957 18 C -0.678 4.678 19 S 2.503 3.497 20 C -0.650 4.650 21 O -0.926 6.926 22 O -0.938 6.938 23 C 0.009 3.991 24 C -0.146 4.146 25 C 0.061 3.939 26 Cl -0.014 7.014 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.110 0.890 32 H 0.266 0.734 33 H 0.168 0.832 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.154 0.846 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 11.844 -15.012 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.559 4.559 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.265 6.265 14 C 0.332 3.668 15 O -0.376 6.376 16 C -0.128 4.128 17 C 0.024 3.976 18 C -0.763 4.763 19 S 2.681 3.319 20 C -0.800 4.800 21 O -0.923 6.923 22 O -0.935 6.935 23 C -0.010 4.010 24 C -0.166 4.166 25 C 0.033 3.967 26 Cl 0.016 6.984 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.128 0.872 32 H 0.076 0.924 33 H 0.186 0.814 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.172 0.828 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.344 11.103 -14.993 20.050 hybrid contribution 0.616 0.438 1.190 1.409 sum -6.728 11.542 -13.804 19.210 Atomic orbital electron populations 1.21859 0.98331 0.99092 1.00720 1.22037 0.92670 0.99245 1.03509 1.20759 0.95119 0.88778 0.78200 0.93257 1.21065 0.89503 1.39070 1.06300 0.91178 1.24877 0.99240 0.94706 0.95047 1.69900 1.35320 1.37788 1.09447 0.86234 0.83866 0.77947 0.78186 1.19440 1.20798 1.20681 1.86522 1.33135 1.62290 1.44596 1.20554 0.81812 0.77702 0.86773 1.90880 1.54799 1.57459 1.34456 1.19425 0.95086 1.03288 0.94989 1.21385 0.98855 0.88776 0.88547 1.30727 1.12171 1.13874 1.19542 1.05226 0.75575 0.77092 0.74017 1.30226 1.16206 1.20965 1.12594 1.93644 1.70519 1.42547 1.85592 1.93583 1.61558 1.87070 1.51279 1.21069 0.90597 0.91525 0.97815 1.21140 1.01891 1.02260 0.91280 1.21458 0.91094 0.94049 0.90102 1.98455 1.66681 1.96227 1.37087 0.94783 0.92756 0.95021 0.93819 0.87228 0.92413 0.81415 0.84469 0.84833 0.84951 0.82811 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.56 37.16 0.32 -2.81 16 2 C -0.14 -3.36 5.49 -26.73 -0.15 -3.51 16 3 C 0.22 5.80 2.25 -27.88 -0.06 5.73 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.22 8.90 -34.44 -0.31 -14.53 16 6 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.63 11.30 55.43 0.63 -24.00 16 9 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 O -0.35 -8.03 9.06 -40.54 -0.37 -8.40 16 14 C 0.49 10.04 6.34 34.57 0.22 10.26 16 15 O -0.49 -10.74 11.15 -19.25 -0.21 -10.95 16 16 C -0.12 -2.02 5.88 -104.95 -0.62 -2.64 16 17 C 0.04 0.60 9.03 -39.18 -0.35 0.24 16 18 C -0.68 -7.14 5.65 -39.64 -0.22 -7.36 16 19 S 2.50 22.13 5.79 -107.50 -0.62 21.50 16 20 C -0.65 -3.03 10.79 101.05 1.09 -1.94 16 21 O -0.93 -12.08 17.12 -57.54 -0.99 -13.06 16 22 O -0.94 -10.20 17.11 -57.54 -0.98 -11.19 16 23 C 0.01 0.08 9.46 -39.50 -0.37 -0.29 16 24 C -0.15 -1.48 9.82 -39.61 -0.39 -1.87 16 25 C 0.06 0.84 6.35 -39.05 -0.25 0.60 16 26 Cl -0.01 -0.21 26.03 -51.86 -1.35 -1.56 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 1.24 7.79 -51.93 -0.40 0.83 16 29 H 0.03 0.67 6.06 -51.93 -0.31 0.36 16 30 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.17 2.33 7.12 -52.48 -0.37 1.96 16 34 H 0.14 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.13 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 37 H 0.15 0.91 7.56 -52.49 -0.40 0.51 16 38 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -34.63 348.77 -9.10 -43.74 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.25 Total: -0.50 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -1.19 Total: -16.50 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 0.63 Total: -24.00 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -2.55 Total: -43.60 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 22.13 SS G_CDS: -0.62 Total: 21.50 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.35 Total: -1.56 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.63 -9.10 -43.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188012739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.636 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds