Wall clock time and date at job start Sat Apr 11 2020 07:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47207 * 2 1 4 4 H 1.08999 * 109.46868 * 55.00595 * 3 2 1 5 5 C 1.50699 * 109.47061 * 175.00067 * 3 2 1 6 6 H 1.07999 * 120.00056 * 120.00101 * 5 3 2 7 7 C 1.37880 * 120.00172 * 300.00389 * 5 3 2 8 8 N 1.31522 * 119.99779 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00169 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46977 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46892 * 119.99902 * 9 7 5 12 12 H 1.48502 * 109.47134 * 239.99840 * 9 7 5 13 13 O 1.45196 * 109.46964 * 295.00396 * 3 2 1 14 14 C 1.34718 * 117.00175 * 90.00337 * 13 3 2 15 15 O 1.21483 * 119.99871 * 359.97438 * 14 13 3 16 16 C 1.47644 * 119.99816 * 180.27300 * 14 13 3 17 17 C 1.39675 * 120.16458 * 359.44089 * 16 14 13 18 18 C 1.37882 * 119.86564 * 179.76586 * 17 16 14 19 19 S 1.76199 * 119.90846 * 180.23086 * 18 17 16 20 20 C 1.81393 * 104.45167 * 270.28096 * 19 18 17 21 21 O 1.42095 * 104.27586 * 26.35792 * 19 18 17 22 22 O 1.42107 * 104.27386 * 154.21336 * 19 18 17 23 23 C 1.38441 * 120.18145 * 0.51818 * 18 17 16 24 24 C 1.38269 * 120.32810 * 359.73574 * 23 18 17 25 25 C 1.38142 * 120.14003 * 0.02562 * 24 23 18 26 26 Cl 1.73600 * 120.09785 * 179.97438 * 25 24 23 27 27 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46843 * 299.99589 * 1 2 3 29 29 H 1.09000 * 109.47031 * 59.99386 * 1 2 3 30 30 H 1.09000 * 109.46843 * 240.00411 * 2 1 3 31 31 H 1.09000 * 109.47031 * 120.00614 * 2 1 3 32 32 H 0.96997 * 120.00070 * 180.02562 * 8 7 5 33 33 H 1.08005 * 120.06902 * 0.02562 * 17 16 14 34 34 H 1.09004 * 109.47209 * 60.00086 * 20 19 18 35 35 H 1.08995 * 109.47431 * 179.97438 * 20 19 18 36 36 H 1.09002 * 109.47266 * 300.00245 * 20 19 18 37 37 H 1.07996 * 119.83124 * 179.71553 * 23 18 17 38 38 H 1.07997 * 119.92761 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0051 0.8798 1.3810 10 1 6.5989 1.5440 0.1930 11 1 6.4001 1.6154 2.6091 12 1 6.4962 -0.5192 1.4625 13 8 1.6558 2.0917 -1.2406 14 6 0.4684 2.7278 -1.2559 15 8 -0.2273 2.7395 -0.2600 16 6 0.0096 3.4052 -2.4849 17 6 0.8091 3.3986 -3.6302 18 6 0.3724 4.0290 -4.7761 19 16 1.3774 4.0161 -6.2233 20 6 2.4149 5.4958 -6.0672 21 8 2.1638 2.8397 -6.0934 22 8 0.4536 4.1654 -7.2927 23 6 -0.8508 4.6771 -4.7908 24 6 -1.6462 4.6930 -3.6599 25 6 -1.2241 4.0616 -2.5061 26 17 -2.2233 4.0828 -1.0866 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8292 -0.0606 2.9502 33 1 1.7656 2.8971 -3.6195 34 1 3.0110 5.4273 -5.1572 35 1 3.0768 5.5682 -6.9301 36 1 1.7805 6.3810 -6.0201 37 1 -1.1852 5.1730 -5.6900 38 1 -2.5991 5.2009 -3.6785 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188012739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:40 Heat of formation + Delta-G solvation = -151.669019 kcal Electronic energy + Delta-G solvation = -26065.886378 eV Core-core repulsion = 22026.416633 eV Total energy + Delta-G solvation = -4039.469745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.052 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64520 -40.10211 -38.14977 -37.78432 -37.47801 -36.97808 -35.52798 -33.48673 -32.65085 -32.37032 -30.21988 -29.34464 -26.09197 -24.96551 -24.40870 -22.83782 -21.57209 -20.07759 -19.39784 -18.61437 -18.33932 -17.63532 -17.29048 -17.12702 -17.04560 -16.96963 -16.37776 -16.07334 -15.31752 -15.03629 -14.79195 -14.69358 -14.18023 -13.89435 -13.89052 -13.82413 -13.39837 -13.37044 -13.19509 -13.14164 -13.12181 -12.95413 -12.88217 -12.82436 -12.56899 -12.55152 -12.14197 -12.09271 -11.76480 -11.74449 -11.43670 -10.98864 -10.82395 -10.54588 -10.43751 -10.34252 -8.27579 -6.44049 -0.94826 -0.73964 -0.33737 0.82436 1.36364 1.41710 1.43018 1.55987 1.82913 1.87538 2.22264 2.40118 2.99141 3.02427 3.08893 3.41882 3.63671 3.86769 3.96516 4.08064 4.16913 4.33706 4.35208 4.36777 4.45111 4.53569 4.61089 4.68206 4.79851 4.85113 5.03578 5.06010 5.18744 5.31808 5.35753 5.50684 5.64837 5.93076 6.08560 6.59319 6.90356 7.26739 8.79494 Molecular weight = 346.05amu Principal moments of inertia in cm(-1) A = 0.010470 B = 0.004009 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.773932 B = 6981.801133 C = 8933.875020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.131 4.131 3 C 0.228 3.772 4 H 0.012 0.988 5 C -0.548 4.548 6 H 0.067 0.933 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.262 1.262 11 H -0.276 1.276 12 H -0.273 1.273 13 O -0.358 6.358 14 C 0.483 3.517 15 O -0.510 6.510 16 C -0.156 4.156 17 C 0.033 3.967 18 C -0.671 4.671 19 S 2.509 3.491 20 C -0.624 4.624 21 O -0.977 6.977 22 O -0.957 6.957 23 C 0.028 3.972 24 C -0.132 4.132 25 C 0.048 3.952 26 Cl -0.032 7.032 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.270 0.730 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.199 0.801 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.912 13.979 -17.586 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.175 3.825 4 H 0.030 0.970 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.803 3.197 10 H -0.186 1.186 11 H -0.201 1.201 12 H -0.199 1.199 13 O -0.275 6.275 14 C 0.327 3.673 15 O -0.401 6.401 16 C -0.159 4.159 17 C 0.014 3.986 18 C -0.754 4.754 19 S 2.690 3.310 20 C -0.778 4.778 21 O -0.974 6.974 22 O -0.955 6.955 23 C 0.010 3.990 24 C -0.151 4.151 25 C 0.021 3.979 26 Cl -0.002 7.002 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.173 0.827 34 H 0.164 0.836 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.216 0.784 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.231 13.209 -17.568 23.139 hybrid contribution 0.525 -0.089 1.854 1.929 sum -6.706 13.120 -15.714 21.541 Atomic orbital electron populations 1.21697 0.96375 1.00479 1.00011 1.21888 0.94371 0.98274 1.02335 1.20421 0.94670 0.89106 0.78280 0.97022 1.21347 0.90322 1.39977 1.06914 0.91445 1.25778 1.04134 0.93839 0.94345 1.70020 1.37345 1.37964 1.09858 0.85181 0.77810 0.78289 0.78427 1.18642 1.20112 1.19855 1.86501 1.35009 1.63008 1.42980 1.21358 0.80562 0.77066 0.88297 1.90852 1.55020 1.58378 1.35833 1.19224 0.97087 1.05758 0.93788 1.21290 0.98444 0.89757 0.89135 1.31036 1.13223 1.12534 1.18618 1.05043 0.75225 0.77956 0.72746 1.30054 1.15668 1.17881 1.14228 1.93588 1.71152 1.46822 1.85883 1.93553 1.62700 1.87808 1.51390 1.21672 0.89059 0.89555 0.98723 1.21600 1.03131 1.00615 0.89720 1.21659 0.90317 0.95033 0.90904 1.98445 1.66879 1.96384 1.38482 0.92203 0.94229 0.94888 0.93796 0.89319 0.92061 0.82699 0.83630 0.82371 0.81670 0.78422 0.79549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 8.56 71.98 0.62 -5.21 16 2 C -0.13 -6.73 5.49 30.60 0.17 -6.56 16 3 C 0.23 12.51 2.25 29.85 0.07 12.58 16 4 H 0.01 0.73 7.16 -2.39 -0.02 0.71 16 5 C -0.55 -31.06 8.90 25.60 0.23 -30.83 16 6 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 7 C 0.02 1.04 5.29 84.65 0.45 1.48 16 8 N -0.91 -52.27 11.30 21.45 0.24 -52.02 16 9 Si 0.98 42.80 29.54 68.60 2.03 44.82 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 O -0.36 -17.48 9.06 -56.28 -0.51 -17.99 16 14 C 0.48 20.91 6.34 70.31 0.45 21.36 16 15 O -0.51 -23.87 11.15 19.89 0.22 -23.65 16 16 C -0.16 -5.15 5.88 -20.08 -0.12 -5.27 16 17 C 0.03 0.91 9.03 22.53 0.20 1.11 16 18 C -0.67 -12.71 5.65 22.23 0.13 -12.59 16 19 S 2.51 38.64 5.79 -56.49 -0.33 38.32 16 20 C -0.62 -3.01 10.79 113.37 1.22 -1.79 16 21 O -0.98 -25.27 17.12 -127.65 -2.19 -27.45 16 22 O -0.96 -18.00 17.11 -127.65 -2.18 -20.18 16 23 C 0.03 0.40 9.46 22.33 0.21 0.61 16 24 C -0.13 -2.24 9.82 22.25 0.22 -2.02 16 25 C 0.05 1.31 6.35 22.61 0.14 1.46 16 26 Cl -0.03 -0.94 26.03 -2.72 -0.07 -1.01 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.04 1.88 7.79 -2.39 -0.02 1.86 16 29 H 0.03 1.45 6.06 -2.39 -0.01 1.44 16 30 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.09 4.95 5.95 -2.39 -0.01 4.93 16 32 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.16 4.58 7.12 -2.91 -0.02 4.56 16 34 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.16 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.17 -0.15 8.14 -2.39 -0.02 -0.17 16 37 H 0.20 1.14 7.56 -2.91 -0.02 1.12 16 38 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -80.40 348.77 2.29 -78.11 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.10 Total: 6.73 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 3.98 Total: -25.67 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.24 Total: -52.02 kcal Atomic # 8 Polarization: -84.61 SS G_CDS: -4.66 Total: -89.27 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 38.64 SS G_CDS: -0.33 Total: 38.32 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.07 Total: -1.01 kcal Total: -80.40 2.29 -78.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188012739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.560 kcal (2) G-P(sol) polarization free energy of solvation -80.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds