Wall clock time and date at job start Sat Apr 11 2020 07:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99931 * 2 1 4 4 H 1.48497 * 109.47011 * 240.00129 * 3 2 1 5 5 H 1.48504 * 109.46830 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47082 * 120.00009 * 3 2 1 7 7 C 1.37876 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00316 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99694 * 0.02562 * 7 2 1 10 10 O 1.42897 * 113.41406 * 313.19883 * 9 7 2 11 11 C 1.53499 * 114.20573 * 179.97438 * 9 7 2 12 12 N 1.47062 * 87.98449 * 220.34655 * 11 9 7 13 13 S 1.65604 * 136.05568 * 207.08724 * 12 11 9 14 14 O 1.42098 * 106.40169 * 342.05559 * 13 12 11 15 15 O 1.42106 * 106.40261 * 209.13816 * 13 12 11 16 16 C 1.76198 * 107.22002 * 95.59784 * 13 12 11 17 17 C 1.38261 * 119.98586 * 15.28991 * 16 13 12 18 18 C 1.38229 * 120.05049 * 179.72488 * 17 16 13 19 19 C 1.38218 * 120.02134 * 0.54939 * 18 17 16 20 20 C 1.38430 * 119.97887 * 359.72505 * 19 18 17 21 21 F 1.35096 * 120.02990 * 179.97438 * 20 19 18 22 22 C 1.38174 * 119.98660 * 195.56670 * 16 13 12 23 23 N 1.48005 * 120.01248 * 0.02562 * 22 16 13 24 24 O 1.21796 * 120.00269 * 95.19567 * 23 22 16 25 25 O 1.21803 * 119.99943 * 275.19128 * 23 22 16 26 26 C 1.47064 * 87.88956 * 27.34494 * 12 11 9 27 27 H 0.97000 * 120.00025 * 359.97438 * 1 2 3 28 28 H 0.96701 * 114.00033 * 46.79807 * 10 9 7 29 29 H 1.09002 * 113.46753 * 105.56295 * 11 9 7 30 30 H 1.09000 * 113.46787 * 335.12605 * 11 9 7 31 31 H 1.07999 * 119.97790 * 359.97438 * 17 16 13 32 32 H 1.08002 * 119.98533 * 180.27280 * 18 17 16 33 33 H 1.08002 * 120.00660 * 179.69816 * 19 18 17 34 34 H 1.08998 * 113.47191 * 87.43593 * 26 12 11 35 35 H 1.08998 * 113.47105 * 217.88239 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.1894 -2.5419 0.9560 11 6 2.1488 -3.7442 0.0005 12 7 1.2100 -4.3574 -0.9510 13 16 0.7498 -5.8982 -1.3469 14 8 1.7614 -6.7606 -0.8448 15 8 0.3667 -5.8635 -2.7149 16 6 -0.7111 -6.2581 -0.4301 17 6 -1.4211 -5.2338 0.1687 18 6 -2.5705 -5.5141 0.8835 19 6 -3.0051 -6.8201 1.0100 20 6 -2.2920 -7.8470 0.4157 21 9 -2.7155 -9.1239 0.5391 22 6 -1.1436 -7.5644 -0.3049 23 7 -0.3797 -8.6613 -0.9404 24 8 0.4455 -9.2823 -0.2948 25 8 -0.5762 -8.9429 -2.1090 26 6 0.8644 -3.0005 -1.4007 27 1 -0.4850 0.8400 0.0004 28 1 -0.3743 -1.7561 0.9531 29 1 2.1851 -4.2532 0.9637 30 1 3.1385 -3.5658 -0.4200 31 1 -1.0796 -4.2136 0.0745 32 1 -3.1267 -4.7127 1.3471 33 1 -3.9006 -7.0392 1.5726 34 1 1.5154 -2.6260 -2.1906 35 1 -0.1936 -2.8759 -1.6312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189060463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:45 Heat of formation + Delta-G solvation = -81.514229 kcal Electronic energy + Delta-G solvation = -29241.830740 eV Core-core repulsion = 24673.526417 eV Total energy + Delta-G solvation = -4568.304323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.056 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.75806 -42.36135 -39.54634 -38.97881 -37.15438 -36.64721 -35.88009 -34.29315 -32.64762 -32.39218 -31.55294 -28.18249 -26.89196 -25.38020 -24.96658 -24.22999 -22.95299 -20.26982 -19.77884 -18.98716 -18.96910 -18.27708 -18.18145 -17.57841 -16.81075 -16.44799 -16.42833 -16.31631 -15.90042 -15.71577 -15.28849 -14.48855 -14.13956 -14.03287 -13.53908 -13.40341 -13.24140 -13.10512 -12.81352 -12.38506 -12.13699 -12.03217 -11.94291 -11.77404 -11.73507 -11.50639 -11.20666 -11.19843 -11.08081 -11.02084 -10.66335 -10.47572 -10.24410 -9.65737 -9.53937 -9.06524 -8.84999 -8.39756 -6.56924 -4.65591 -0.18193 0.17865 0.22086 0.31429 0.95516 2.56631 2.78129 3.07822 3.14208 3.16214 3.17809 3.57877 3.96863 4.06326 4.07598 4.38822 4.47895 4.61451 4.69427 4.77908 5.13852 5.21089 5.32088 5.54772 5.75631 5.83648 5.89512 6.06756 6.09171 6.11598 6.35444 6.43853 6.74864 7.20995 7.35847 7.48386 7.61959 8.37812 9.04408 9.20628 10.50244 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.003808 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.560839 B = 7351.951082 C = 8220.895342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.075 0.925 9 C 0.242 3.758 10 O -0.575 6.575 11 C 0.134 3.866 12 N -1.035 6.035 13 S 2.690 3.310 14 O -0.939 6.939 15 O -0.934 6.934 16 C -0.612 4.612 17 C -0.013 4.013 18 C -0.068 4.068 19 C -0.098 4.098 20 C 0.130 3.870 21 F -0.119 7.119 22 C 0.022 3.978 23 N -0.009 5.009 24 O -0.084 6.084 25 O -0.134 6.134 26 C 0.099 3.901 27 H 0.276 0.724 28 H 0.397 0.603 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.184 0.816 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.089 0.911 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.668 -6.253 2.940 9.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.129 4.129 3 Si 0.737 3.263 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.093 0.907 9 C 0.198 3.802 10 O -0.389 6.389 11 C 0.009 3.991 12 N -0.879 5.879 13 S 2.776 3.224 14 O -0.929 6.929 15 O -0.924 6.924 16 C -0.693 4.693 17 C -0.032 4.032 18 C -0.086 4.086 19 C -0.117 4.117 20 C 0.109 3.891 21 F -0.097 7.097 22 C -0.061 4.061 23 N 0.523 4.477 24 O -0.316 6.316 25 O -0.350 6.350 26 C -0.025 4.025 27 H 0.086 0.914 28 H 0.254 0.746 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.201 0.799 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.108 0.892 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.767 -7.009 2.737 10.120 hybrid contribution -0.474 0.787 0.128 0.927 sum -7.242 -6.223 2.865 9.969 Atomic orbital electron populations 1.69190 1.06229 1.28540 1.50159 1.25053 0.95046 0.99987 0.92764 0.86344 0.79507 0.81358 0.79108 1.19788 1.21003 1.19798 1.21421 0.94105 0.89587 1.52065 0.90713 1.19783 0.85226 0.91238 0.83987 1.85935 1.45072 1.48505 1.59378 1.23000 0.93230 0.92209 0.90616 1.59687 1.54411 1.19757 1.54013 1.02342 0.73478 0.72646 0.73914 1.93667 1.53971 1.64038 1.81206 1.93652 1.83673 1.85956 1.29073 1.31337 1.25430 0.95679 1.16839 1.21670 0.91834 0.99955 0.89718 1.21651 0.95270 0.96317 0.95357 1.21522 1.00255 0.91557 0.98387 1.17149 0.92538 0.80666 0.98784 1.91616 1.89093 1.34915 1.94053 1.20329 0.95450 0.87358 1.02922 1.43584 1.00818 1.01781 1.01467 1.94617 1.25088 1.48292 1.63564 1.94643 1.70637 1.70520 0.99234 1.23984 1.00489 0.75266 1.02793 0.91388 0.74600 0.91144 0.88843 0.79873 0.81741 0.81672 0.89239 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -20.14 11.01 55.43 0.61 -19.53 16 2 C 0.07 1.65 5.40 -17.82 -0.10 1.55 16 3 Si 0.91 17.84 29.54 -169.99 -5.02 12.82 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 7 C -0.53 -11.78 8.69 -34.44 -0.30 -12.08 16 8 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.24 4.87 1.59 -91.11 -0.14 4.73 16 10 O -0.57 -11.52 11.74 -35.23 -0.41 -11.93 16 11 C 0.13 2.44 8.13 -8.50 -0.07 2.37 16 12 N -1.04 -18.98 3.37 -125.00 -0.42 -19.40 16 13 S 2.69 51.53 5.71 -107.50 -0.61 50.91 16 14 O -0.94 -19.72 16.83 -60.33 -1.02 -20.74 16 15 O -0.93 -19.72 18.02 -57.17 -1.03 -20.75 16 16 C -0.61 -10.25 5.83 -39.60 -0.23 -10.48 16 17 C -0.01 -0.18 9.56 -39.58 -0.38 -0.56 16 18 C -0.07 -0.68 10.04 -39.59 -0.40 -1.08 16 19 C -0.10 -0.95 10.03 -39.52 -0.40 -1.35 16 20 C 0.13 1.76 7.30 -39.42 -0.29 1.47 16 21 F -0.12 -1.60 17.10 2.25 0.04 -1.56 16 22 C 0.02 0.37 6.11 -79.89 -0.49 -0.12 16 23 N -0.01 -0.16 3.00 33.99 0.10 -0.06 16 24 O -0.08 -1.61 18.71 -31.81 -0.60 -2.20 16 25 O -0.13 -2.58 19.25 -29.46 -0.57 -3.15 16 26 C 0.10 1.88 7.60 -8.36 -0.06 1.82 16 27 H 0.28 5.95 8.31 -40.82 -0.34 5.61 16 28 H 0.40 8.24 6.33 45.56 0.29 8.53 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.57 8.10 -51.93 -0.42 1.15 16 31 H 0.18 2.67 4.79 -52.49 -0.25 2.41 16 32 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 35 H 0.07 1.19 8.00 -51.93 -0.42 0.77 16 LS Contribution 331.56 15.07 5.00 5.00 Total: -1.00 -27.79 331.56 -8.81 -36.61 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -2.03 Total: 7.70 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.85 Total: -13.72 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.29 Total: -38.99 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -3.62 Total: -58.77 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.02 Total: 12.82 kcal Atomic # 16 Polarization: 51.53 SS G_CDS: -0.61 Total: 50.91 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.79 -8.81 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189060463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.907 kcal (2) G-P(sol) polarization free energy of solvation -27.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds