Wall clock time and date at job start Sat Apr 11 2020 07:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99931 * 2 1 4 4 H 1.48497 * 109.47011 * 240.00129 * 3 2 1 5 5 H 1.48504 * 109.46830 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47082 * 120.00009 * 3 2 1 7 7 C 1.37876 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00316 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99694 * 0.02562 * 7 2 1 10 10 O 1.42897 * 113.41406 * 313.19883 * 9 7 2 11 11 C 1.53499 * 114.20573 * 179.97438 * 9 7 2 12 12 N 1.47062 * 87.98449 * 220.34655 * 11 9 7 13 13 S 1.65604 * 136.05568 * 207.08724 * 12 11 9 14 14 O 1.42098 * 106.40169 * 342.05559 * 13 12 11 15 15 O 1.42106 * 106.40261 * 209.13816 * 13 12 11 16 16 C 1.76198 * 107.22002 * 95.59784 * 13 12 11 17 17 C 1.38261 * 119.98586 * 15.28991 * 16 13 12 18 18 C 1.38229 * 120.05049 * 179.72488 * 17 16 13 19 19 C 1.38218 * 120.02134 * 0.54939 * 18 17 16 20 20 C 1.38430 * 119.97887 * 359.72505 * 19 18 17 21 21 F 1.35096 * 120.02990 * 179.97438 * 20 19 18 22 22 C 1.38174 * 119.98660 * 195.56670 * 16 13 12 23 23 N 1.48005 * 120.01248 * 0.02562 * 22 16 13 24 24 O 1.21796 * 120.00269 * 95.19567 * 23 22 16 25 25 O 1.21803 * 119.99943 * 275.19128 * 23 22 16 26 26 C 1.47064 * 87.88956 * 27.34494 * 12 11 9 27 27 H 0.97000 * 120.00025 * 359.97438 * 1 2 3 28 28 H 0.96701 * 114.00033 * 46.79807 * 10 9 7 29 29 H 1.09002 * 113.46753 * 105.56295 * 11 9 7 30 30 H 1.09000 * 113.46787 * 335.12605 * 11 9 7 31 31 H 1.07999 * 119.97790 * 359.97438 * 17 16 13 32 32 H 1.08002 * 119.98533 * 180.27280 * 18 17 16 33 33 H 1.08002 * 120.00660 * 179.69816 * 19 18 17 34 34 H 1.08998 * 113.47191 * 87.43593 * 26 12 11 35 35 H 1.08998 * 113.47105 * 217.88239 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.1894 -2.5419 0.9560 11 6 2.1488 -3.7442 0.0005 12 7 1.2100 -4.3574 -0.9510 13 16 0.7498 -5.8982 -1.3469 14 8 1.7614 -6.7606 -0.8448 15 8 0.3667 -5.8635 -2.7149 16 6 -0.7111 -6.2581 -0.4301 17 6 -1.4211 -5.2338 0.1687 18 6 -2.5705 -5.5141 0.8835 19 6 -3.0051 -6.8201 1.0100 20 6 -2.2920 -7.8470 0.4157 21 9 -2.7155 -9.1239 0.5391 22 6 -1.1436 -7.5644 -0.3049 23 7 -0.3797 -8.6613 -0.9404 24 8 0.4455 -9.2823 -0.2948 25 8 -0.5762 -8.9429 -2.1090 26 6 0.8644 -3.0005 -1.4007 27 1 -0.4850 0.8400 0.0004 28 1 -0.3743 -1.7561 0.9531 29 1 2.1851 -4.2532 0.9637 30 1 3.1385 -3.5658 -0.4200 31 1 -1.0796 -4.2136 0.0745 32 1 -3.1267 -4.7127 1.3471 33 1 -3.9006 -7.0392 1.5726 34 1 1.5154 -2.6260 -2.1906 35 1 -0.1936 -2.8759 -1.6312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189060463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:44 Heat of formation + Delta-G solvation = -100.919183 kcal Electronic energy + Delta-G solvation = -29242.672202 eV Core-core repulsion = 24673.526417 eV Total energy + Delta-G solvation = -4569.145785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.056 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.80005 -43.75091 -40.67565 -40.43214 -38.73021 -38.09185 -37.45758 -35.86977 -34.04623 -33.73126 -32.62673 -29.74622 -28.15713 -26.87430 -26.58235 -25.31050 -24.13665 -21.73574 -21.13986 -20.40467 -20.30329 -19.69832 -19.48293 -19.06065 -18.29194 -17.69422 -17.58799 -17.48572 -17.34402 -16.94201 -16.63285 -16.03706 -15.54982 -15.20626 -15.00330 -14.92315 -14.41673 -14.17997 -13.93121 -13.83297 -13.72600 -13.63407 -13.52540 -13.29489 -13.23899 -12.90069 -12.76874 -12.68491 -12.59288 -12.35446 -12.21131 -12.11107 -11.21953 -11.12680 -10.73399 -10.65394 -10.41328 -9.95852 -8.23759 -6.36690 -1.32503 -1.25511 -1.13535 -0.78273 -0.30769 1.32993 1.52498 1.56893 1.61423 1.62322 1.95809 2.30331 2.44790 2.83489 2.97398 3.03267 3.04319 3.52793 3.61223 3.64285 3.83009 4.17935 4.23032 4.36334 4.53330 4.57179 4.60225 4.60926 4.67231 4.86464 4.93175 5.09221 5.21269 5.64888 5.82122 5.88032 5.97795 6.68412 7.35705 7.56816 8.81852 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.003808 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.560839 B = 7351.951082 C = 8220.895342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.041 3.959 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.233 3.767 10 O -0.571 6.571 11 C 0.133 3.867 12 N -1.032 6.032 13 S 2.696 3.304 14 O -0.968 6.968 15 O -0.965 6.965 16 C -0.631 4.631 17 C -0.018 4.018 18 C -0.045 4.045 19 C -0.065 4.065 20 C 0.128 3.872 21 F -0.119 7.119 22 C -0.010 4.010 23 N -0.011 5.011 24 O -0.098 6.098 25 O -0.157 6.157 26 C 0.101 3.899 27 H 0.277 0.723 28 H 0.393 0.607 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.177 0.823 32 H 0.214 0.786 33 H 0.222 0.778 34 H 0.089 0.911 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.823 -5.322 4.728 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.160 4.160 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.590 4.590 8 H 0.092 0.908 9 C 0.189 3.811 10 O -0.384 6.384 11 C 0.009 3.991 12 N -0.875 5.875 13 S 2.788 3.212 14 O -0.958 6.958 15 O -0.956 6.956 16 C -0.717 4.717 17 C -0.037 4.037 18 C -0.063 4.063 19 C -0.084 4.084 20 C 0.107 3.893 21 F -0.097 7.097 22 C -0.093 4.093 23 N 0.518 4.482 24 O -0.329 6.329 25 O -0.371 6.371 26 C -0.024 4.024 27 H 0.087 0.913 28 H 0.250 0.750 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.194 0.806 32 H 0.231 0.769 33 H 0.238 0.762 34 H 0.107 0.893 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.877 -6.083 4.482 11.657 hybrid contribution 0.081 0.511 -0.329 0.613 sum -8.795 -5.571 4.153 11.209 Atomic orbital electron populations 1.69245 1.06688 1.28960 1.50330 1.25567 0.95724 1.01974 0.92760 0.85579 0.78406 0.78802 0.78643 1.20031 1.21041 1.20025 1.21679 0.94363 0.90631 1.52282 0.90849 1.19829 0.85572 0.91196 0.84524 1.85927 1.44931 1.48140 1.59423 1.23082 0.93510 0.91414 0.91133 1.59508 1.54757 1.19204 1.54028 1.01645 0.73782 0.72302 0.73489 1.93620 1.55959 1.64773 1.81483 1.93603 1.84250 1.86267 1.31437 1.30722 1.25289 0.96579 1.19095 1.21823 0.93124 0.98723 0.90078 1.22225 0.93287 0.97877 0.92924 1.22192 1.00394 0.89873 0.95903 1.17562 0.91739 0.81622 0.98403 1.91620 1.88864 1.35286 1.93963 1.20538 0.97058 0.86367 1.05296 1.43968 1.00694 1.02253 1.01314 1.94582 1.25672 1.49270 1.63423 1.94615 1.71051 1.71414 1.00007 1.23918 1.00833 0.75371 1.02272 0.91315 0.75014 0.90400 0.87711 0.80584 0.76898 0.76179 0.89302 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -39.75 11.01 21.45 0.24 -39.51 16 2 C 0.04 1.78 5.40 84.65 0.46 2.24 16 3 Si 0.96 35.84 29.54 68.60 2.03 37.87 16 4 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 6 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 7 C -0.55 -23.97 8.69 25.60 0.22 -23.74 16 8 H 0.07 3.13 7.81 -2.91 -0.02 3.11 16 9 C 0.23 9.23 1.59 -11.11 -0.02 9.22 16 10 O -0.57 -22.14 11.74 -148.98 -1.75 -23.89 16 11 C 0.13 4.81 8.13 83.18 0.68 5.48 16 12 N -1.03 -37.97 3.37 -549.87 -1.85 -39.82 16 13 S 2.70 105.79 5.71 -56.49 -0.32 105.47 16 14 O -0.97 -42.16 16.83 -124.98 -2.10 -44.26 16 15 O -0.97 -42.30 18.02 -128.00 -2.31 -44.60 16 16 C -0.63 -20.80 5.83 22.26 0.13 -20.67 16 17 C -0.02 -0.47 9.56 22.27 0.21 -0.25 16 18 C -0.05 -0.68 10.04 22.26 0.22 -0.46 16 19 C -0.07 -0.91 10.03 22.31 0.22 -0.69 16 20 C 0.13 3.12 7.30 22.37 0.16 3.28 16 21 F -0.12 -2.94 17.10 44.97 0.77 -2.18 16 22 C -0.01 -0.34 6.11 36.42 0.22 -0.12 16 23 N -0.01 -0.43 3.00 -46.37 -0.14 -0.57 16 24 O -0.10 -3.88 18.71 21.14 0.40 -3.48 16 25 O -0.16 -6.33 19.25 18.88 0.36 -5.97 16 26 C 0.10 3.81 7.60 83.27 0.63 4.44 16 27 H 0.28 11.61 8.31 -92.71 -0.77 10.84 16 28 H 0.39 15.84 6.33 -74.06 -0.47 15.37 16 29 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.10 3.50 8.10 -2.39 -0.02 3.48 16 31 H 0.18 4.80 4.79 -2.91 -0.01 4.78 16 32 H 0.21 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.22 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.09 3.31 8.10 -2.39 -0.02 3.29 16 35 H 0.07 2.54 8.00 -2.39 -0.02 2.52 16 Total: -1.00 -62.52 331.56 -0.81 -63.33 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.72 Total: 18.89 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 3.15 Total: -21.26 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.75 Total: -79.91 kcal Atomic # 8 Polarization: -116.81 SS G_CDS: -5.40 Total: -122.21 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.77 Total: -2.18 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Atomic # 16 Polarization: 105.79 SS G_CDS: -0.32 Total: 105.47 kcal Total: -62.52 -0.81 -63.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189060463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.586 kcal (2) G-P(sol) polarization free energy of solvation -62.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds