Wall clock time and date at job start Sat Apr 11 2020 07:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47150 * 2 1 4 4 C 1.50708 * 109.46971 * 240.00220 * 2 1 3 5 5 H 1.08000 * 119.99565 * 240.00275 * 4 2 1 6 6 C 1.37875 * 120.00098 * 59.99836 * 4 2 1 7 7 N 1.31518 * 120.00097 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99985 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47305 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47239 * 120.00187 * 8 6 4 11 11 H 1.48505 * 109.47251 * 240.00039 * 8 6 4 12 12 N 1.46498 * 109.47190 * 120.00296 * 2 1 3 13 13 C 1.34780 * 119.99641 * 275.00066 * 12 2 1 14 14 O 1.21552 * 120.00080 * 359.97438 * 13 12 2 15 15 C 1.47806 * 119.99278 * 179.97438 * 13 12 2 16 16 C 1.39631 * 120.10323 * 359.97438 * 15 13 12 17 17 C 1.37952 * 120.01001 * 180.02562 * 16 15 13 18 18 C 1.38363 * 120.21466 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 119.89875 * 179.97438 * 18 17 16 20 20 C 1.39115 * 120.20055 * 359.97438 * 18 17 16 21 21 N 1.39785 * 120.00612 * 179.97438 * 20 18 17 22 22 S 1.65604 * 119.99921 * 215.76650 * 21 20 18 23 23 C 1.81404 * 104.44788 * 60.00299 * 22 21 20 24 24 O 1.42105 * 104.27620 * 176.06864 * 22 21 20 25 25 O 1.42092 * 104.27881 * 303.92881 * 22 21 20 26 26 C 1.38591 * 119.98576 * 0.25124 * 20 18 17 27 27 H 1.09003 * 109.47087 * 59.99836 * 1 2 3 28 28 H 1.08994 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47073 * 300.00177 * 1 2 3 30 30 H 0.96998 * 120.00135 * 179.97438 * 7 6 4 31 31 H 0.96994 * 120.00034 * 94.99584 * 12 2 1 32 32 H 1.07994 * 119.99370 * 359.97438 * 16 15 13 33 33 H 1.08002 * 119.88777 * 179.97438 * 17 16 15 34 34 H 0.96994 * 120.00282 * 35.77475 * 21 20 18 35 35 H 1.08998 * 109.47075 * 180.02562 * 23 22 21 36 36 H 1.08998 * 109.46651 * 299.99441 * 23 22 21 37 37 H 1.08995 * 109.47348 * 59.99503 * 23 22 21 38 38 H 1.07998 * 120.10646 * 179.72114 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6035 8 14 2.3224 -1.1195 -4.0080 9 1 3.1474 -2.2863 -3.6039 10 1 1.1678 -1.5865 -4.8166 11 1 3.1472 -0.1856 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8584 1.1612 2.4116 15 6 2.6392 -0.7153 3.5640 16 6 2.9709 -2.0703 3.5038 17 6 3.4296 -2.7191 4.6315 18 6 3.5632 -2.0313 5.8247 19 17 4.1406 -2.8561 7.2389 20 6 3.2363 -0.6809 5.8943 21 7 3.3724 0.0098 7.1019 22 16 2.2840 1.1901 7.5078 23 6 0.6857 0.3336 7.5594 24 8 2.6755 1.5940 8.8128 25 8 2.3282 2.0982 6.4158 26 6 2.7703 -0.0221 4.7676 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7095 1.1619 -3.4844 31 1 2.2490 -1.6318 1.1525 32 1 2.8676 -2.6107 2.5745 33 1 3.6852 -3.7673 4.5829 34 1 4.1043 -0.2020 7.7021 35 1 -0.0986 1.0436 7.8218 36 1 0.4728 -0.0972 6.5810 37 1 0.7226 -0.4599 8.3056 38 1 2.5117 1.0252 4.8207 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194623582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:02 Heat of formation + Delta-G solvation = -82.988807 kcal Electronic energy + Delta-G solvation = -25636.409848 eV Core-core repulsion = 21632.211053 eV Total energy + Delta-G solvation = -4004.198796 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28214 -38.56203 -37.50058 -36.74415 -36.35035 -35.42416 -34.89939 -32.49168 -31.17012 -29.88238 -29.71282 -28.48999 -25.31036 -24.15046 -23.05583 -21.28599 -20.00395 -19.60878 -18.65320 -18.06134 -16.91213 -16.78386 -16.64688 -15.97439 -15.75680 -15.37470 -14.90318 -14.48363 -14.39343 -14.09677 -13.81292 -13.65838 -13.53326 -13.26012 -12.87908 -12.61572 -12.49557 -12.46890 -12.34176 -11.97551 -11.78854 -11.62431 -11.47950 -11.23501 -11.12870 -11.00224 -10.92644 -10.77596 -10.34540 -10.28070 -9.28278 -9.13342 -9.07521 -8.67201 -8.59963 -8.00044 -6.16172 -4.25874 -0.22887 0.55025 0.95025 1.70437 2.15100 2.88669 3.21537 3.29458 3.31633 3.33493 3.76009 3.84333 3.94823 4.30034 4.35662 4.46243 4.53856 4.65822 4.83817 4.95198 5.14324 5.16790 5.32503 5.35009 5.71871 5.78326 5.90875 6.15467 6.31992 6.57353 6.78176 6.90980 7.09330 7.35817 7.49235 7.64023 7.86010 8.09908 8.54528 8.71506 8.98687 9.41572 10.89874 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.002840 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.970906 B = 9856.927031 C =11104.436087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.698 5.698 13 C 0.537 3.463 14 O -0.536 6.536 15 C -0.082 4.082 16 C -0.091 4.091 17 C -0.092 4.092 18 C -0.046 4.046 19 Cl -0.063 7.063 20 C 0.153 3.847 21 N -1.052 6.052 22 S 2.603 3.397 23 C -0.667 4.667 24 O -0.951 6.951 25 O -0.933 6.933 26 C -0.113 4.113 27 H 0.091 0.909 28 H 0.027 0.973 29 H 0.016 0.984 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.428 0.572 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 -8.700 20.796 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.070 0.930 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.346 5.346 13 C 0.321 3.679 14 O -0.415 6.415 15 C -0.086 4.086 16 C -0.111 4.111 17 C -0.111 4.111 18 C -0.077 4.077 19 Cl -0.034 7.034 20 C 0.055 3.945 21 N -0.801 5.801 22 S 2.697 3.303 23 C -0.818 4.818 24 O -0.941 6.941 25 O -0.923 6.923 26 C -0.135 4.135 27 H 0.110 0.890 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.222 0.778 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.265 0.735 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.299 -6.784 20.892 22.086 hybrid contribution 0.464 -1.829 -0.532 1.961 sum 2.763 -8.613 20.361 22.280 Atomic orbital electron populations 1.22088 0.98237 0.99213 1.01098 1.18836 0.91168 0.94166 0.79676 0.93009 1.21226 1.32580 1.13317 0.90226 0.91954 1.24887 0.94766 0.94940 0.99095 1.69909 1.35781 1.22355 1.23876 0.86382 0.78599 0.79507 0.82520 1.19721 1.20880 1.20848 1.46513 1.64274 1.13557 1.10286 1.18090 0.79580 0.86955 0.83258 1.90790 1.50676 1.15220 1.84779 1.20350 0.99581 0.93883 0.94825 1.21453 0.97237 0.93648 0.98757 1.20894 0.99347 1.00669 0.90224 1.20999 1.05722 0.91136 0.89840 1.98367 1.87346 1.78069 1.39640 1.17008 1.02324 0.89207 0.85961 1.53490 1.43380 1.56823 1.26447 1.05344 0.76642 0.74056 0.74305 1.30439 1.23180 1.15745 1.12419 1.93635 1.80991 1.79808 1.39663 1.93645 1.85605 1.59675 1.53371 1.22135 0.99129 1.02986 0.89238 0.89005 0.95384 0.96501 0.92553 0.77788 0.83861 0.83812 0.73457 0.84586 0.84735 0.84942 0.79899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.21 16 2 C 0.26 6.48 2.56 -69.08 -0.18 6.30 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.54 -13.71 8.73 -34.44 -0.30 -14.01 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.34 11.32 55.43 0.63 -23.71 16 8 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 9 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 N -0.70 -13.84 5.02 -55.89 -0.28 -14.12 16 13 C 0.54 10.50 7.74 -12.35 -0.10 10.40 16 14 O -0.54 -12.73 16.00 5.32 0.09 -12.65 16 15 C -0.08 -1.21 5.87 -104.99 -0.62 -1.82 16 16 C -0.09 -1.01 9.54 -39.17 -0.37 -1.38 16 17 C -0.09 -0.84 9.80 -39.64 -0.39 -1.23 16 18 C -0.05 -0.44 6.34 -39.21 -0.25 -0.69 16 19 Cl -0.06 -0.51 27.95 -51.86 -1.45 -1.96 16 20 C 0.15 1.65 6.12 -83.78 -0.51 1.13 16 21 N -1.05 -9.52 5.39 32.41 0.17 -9.34 16 22 S 2.60 24.91 5.87 -107.50 -0.63 24.28 16 23 C -0.67 -4.24 10.71 101.05 1.08 -3.16 16 24 O -0.95 -11.18 18.08 -57.54 -1.04 -12.22 16 25 O -0.93 -12.91 15.05 -57.54 -0.87 -13.78 16 26 C -0.11 -1.56 8.79 -38.97 -0.34 -1.91 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.39 6.39 6.57 -40.82 -0.27 6.12 16 32 H 0.14 1.35 6.39 -52.49 -0.34 1.01 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.43 3.15 8.18 -34.47 -0.28 2.87 16 35 H 0.14 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.13 0.89 8.14 -51.92 -0.42 0.46 16 37 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.18 2.90 4.76 -52.49 -0.25 2.65 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -34.55 350.68 -8.76 -43.31 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.92 Total: 7.72 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.72 Total: -7.92 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.52 Total: -47.18 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.82 Total: -38.65 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 24.91 SS G_CDS: -0.63 Total: 24.28 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.45 Total: -1.96 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.55 -8.76 -43.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194623582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.678 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds