Wall clock time and date at job start Sat Apr 11 2020 07:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65606 * 119.99996 * 2 1 4 4 O 1.42103 * 106.40084 * 311.46144 * 3 2 1 5 5 O 1.42103 * 106.40124 * 178.54581 * 3 2 1 6 6 C 1.76194 * 107.21983 * 64.99855 * 3 2 1 7 7 C 1.38427 * 119.90777 * 90.00190 * 6 3 2 8 8 C 1.38266 * 120.32202 * 180.02562 * 7 6 3 9 9 C 1.38157 * 120.12431 * 359.97438 * 8 7 6 10 10 Cl 1.73599 * 120.08963 * 179.97438 * 9 8 7 11 11 C 1.39694 * 119.81772 * 0.02562 * 9 8 7 12 12 C 1.47765 * 120.15601 * 179.97438 * 11 9 8 13 13 O 1.21569 * 120.00057 * 0.02562 * 12 11 9 14 14 N 1.34780 * 120.00089 * 179.97438 * 12 11 9 15 15 C 1.46500 * 119.99910 * 180.02562 * 14 12 11 16 16 H 1.09002 * 109.47129 * 324.99754 * 15 14 12 17 17 C 1.52997 * 109.47473 * 85.00011 * 15 14 12 18 18 C 1.50708 * 109.47008 * 205.00179 * 15 14 12 19 19 H 1.08000 * 119.99723 * 359.97438 * 18 15 14 20 20 C 1.37873 * 119.99930 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00195 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99968 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.46809 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46948 * 120.00245 * 22 20 18 25 25 H 1.48497 * 109.47378 * 240.00531 * 22 20 18 26 26 C 1.37890 * 119.91424 * 270.28107 * 6 3 2 27 27 H 1.09011 * 109.47011 * 300.00177 * 1 2 3 28 28 H 1.09000 * 109.47362 * 59.99733 * 1 2 3 29 29 H 1.08995 * 109.47299 * 180.02562 * 1 2 3 30 30 H 0.97000 * 119.99910 * 180.02562 * 2 1 3 31 31 H 1.07999 * 119.83656 * 359.97438 * 7 6 3 32 32 H 1.07989 * 119.93858 * 179.97438 * 8 7 6 33 33 H 0.96994 * 120.00115 * 359.97438 * 14 12 11 34 34 H 1.09002 * 109.47153 * 59.99757 * 17 15 14 35 35 H 1.09001 * 109.46832 * 299.99948 * 17 15 14 36 36 H 1.09004 * 109.47261 * 179.97438 * 17 15 14 37 37 H 0.97006 * 120.00358 * 179.97438 * 21 20 18 38 38 H 1.08002 * 120.06656 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2330 -1.0216 5 8 3.6738 1.1003 0.0346 6 6 1.9378 2.2416 1.5253 7 6 2.7405 2.0141 2.6299 8 6 2.4693 2.6427 3.8312 9 6 1.3938 3.5036 3.9360 10 17 1.0538 4.2918 5.4448 11 6 0.5802 3.7371 2.8247 12 6 -0.5724 4.6559 2.9286 13 8 -0.8141 5.2111 3.9828 14 7 -1.3551 4.8794 1.8543 15 6 -2.4974 5.7908 1.9572 16 1 -2.9407 5.7072 2.9495 17 6 -2.0254 7.2281 1.7288 18 6 -3.5248 5.4281 0.9159 19 1 -3.3446 4.6016 0.2445 20 6 -4.6947 6.1513 0.8206 21 7 -4.9140 7.1580 1.6379 22 14 -5.9679 5.7021 -0.4705 23 1 -5.4845 4.5403 -1.2590 24 1 -7.2466 5.3492 0.1971 25 1 -6.1848 6.8593 -1.3755 26 6 0.8577 3.0938 1.6170 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.9500 -0.8401 -0.0004 31 1 3.5822 1.3417 2.5532 32 1 3.0993 2.4605 4.6891 33 1 -1.1616 4.4374 1.0129 34 1 -1.5821 7.3117 0.7365 35 1 -1.2823 7.4904 2.4820 36 1 -2.8755 7.9062 1.8049 37 1 -5.7369 7.6671 1.5705 38 1 0.2302 3.2667 0.7551 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194663309.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:08 Heat of formation + Delta-G solvation = -106.846289 kcal Electronic energy + Delta-G solvation = -25956.526386 eV Core-core repulsion = 21951.293052 eV Total energy + Delta-G solvation = -4005.233334 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35516 -39.56678 -38.40893 -37.62820 -37.02033 -36.72738 -35.89063 -34.46767 -32.84544 -32.31139 -30.53669 -27.34901 -26.84139 -25.53121 -24.45130 -23.12306 -21.44605 -20.67204 -19.85264 -18.75986 -18.32902 -17.76148 -17.67421 -17.16572 -17.10065 -16.49548 -16.13396 -15.93728 -15.57206 -15.50393 -14.79251 -14.68613 -14.49484 -14.35643 -13.97174 -13.79174 -13.69521 -13.31893 -13.26598 -13.08062 -12.99070 -12.88853 -12.85874 -12.78001 -12.53070 -12.37198 -12.28224 -12.11062 -12.01284 -11.09877 -10.67364 -10.59118 -10.51886 -10.41411 -10.35862 -9.78552 -8.17141 -6.34453 -0.84339 -0.61900 -0.33059 0.91388 1.45835 1.47063 1.55077 1.59110 2.01821 2.25686 2.40280 2.49301 2.68343 3.13284 3.14327 3.42173 3.55343 3.92430 3.96500 4.12829 4.25118 4.43590 4.49194 4.65863 4.68747 4.72616 4.82712 4.90112 4.91292 5.06240 5.07929 5.32811 5.40496 5.57027 5.66029 5.86636 6.07891 6.14034 6.71340 6.83503 7.28118 7.43476 8.89449 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.009902 B = 0.004078 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.142337 B = 6864.501531 C = 9083.049824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.103 6.103 3 S 2.722 3.278 4 O -0.980 6.980 5 O -0.971 6.971 6 C -0.684 4.684 7 C 0.024 3.976 8 C -0.130 4.130 9 C 0.047 3.953 10 Cl -0.034 7.034 11 C -0.159 4.159 12 C 0.533 3.467 13 O -0.562 6.562 14 N -0.699 5.699 15 C 0.273 3.727 16 H 0.006 0.994 17 C -0.135 4.135 18 C -0.546 4.546 19 H 0.075 0.925 20 C 0.016 3.984 21 N -0.917 5.917 22 Si 0.972 3.028 23 H -0.258 1.258 24 H -0.283 1.283 25 H -0.281 1.281 26 C 0.019 3.981 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.433 0.567 31 H 0.190 0.810 32 H 0.182 0.818 33 H 0.402 0.598 34 H 0.038 0.962 35 H 0.012 0.988 36 H 0.069 0.931 37 H 0.265 0.735 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.120 -18.372 -0.992 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.867 5.867 3 S 2.808 3.192 4 O -0.970 6.970 5 O -0.961 6.961 6 C -0.769 4.769 7 C 0.004 3.996 8 C -0.149 4.149 9 C 0.018 3.982 10 Cl -0.005 7.005 11 C -0.164 4.164 12 C 0.320 3.680 13 O -0.443 6.443 14 N -0.349 5.349 15 C 0.170 3.830 16 H 0.024 0.976 17 C -0.194 4.194 18 C -0.584 4.584 19 H 0.093 0.907 20 C -0.184 4.184 21 N -0.555 5.555 22 Si 0.796 3.204 23 H -0.181 1.181 24 H -0.209 1.209 25 H -0.206 1.206 26 C -0.001 4.001 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.271 0.729 31 H 0.207 0.793 32 H 0.200 0.800 33 H 0.237 0.763 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 16.145 -17.267 -0.727 23.650 hybrid contribution -1.159 0.197 0.236 1.199 sum 14.986 -17.070 -0.491 22.720 Atomic orbital electron populations 1.21791 0.77310 1.06387 1.02365 1.54951 1.16697 1.23649 1.91392 1.01110 0.72343 0.72833 0.72883 1.93597 1.79088 1.69797 1.54541 1.93574 1.31714 1.83722 1.87099 1.31154 1.06494 1.15973 1.23324 1.21496 0.95570 0.93506 0.88990 1.21571 0.96171 0.96266 1.00912 1.21673 0.94974 0.93945 0.87587 1.98441 1.94552 1.78647 1.28832 1.19974 0.98503 1.02639 0.95282 1.18538 0.83006 0.82086 0.84374 1.90810 1.72459 1.51850 1.29145 1.46269 1.29395 1.46550 1.12641 1.18410 0.82379 0.85961 0.96286 0.97618 1.21917 0.99607 1.00054 0.97803 1.21552 1.02626 1.16482 1.17738 0.90660 1.25777 1.00103 0.94498 0.98044 1.70055 1.26440 1.20372 1.38649 0.85298 0.78110 0.78513 0.78435 1.18124 1.20915 1.20646 1.21159 0.93566 0.89497 0.95868 0.91897 0.91521 0.86888 0.72934 0.79274 0.80031 0.76251 0.94261 0.96908 0.91247 0.92561 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 11.14 127.77 1.42 2.11 16 2 N -1.10 -11.38 6.19 -206.53 -1.28 -12.66 16 3 S 2.72 47.61 5.73 -56.49 -0.32 47.28 16 4 O -0.98 -24.68 17.00 -128.00 -2.18 -26.85 16 5 O -0.97 -19.71 17.27 -128.00 -2.21 -21.92 16 6 C -0.68 -12.96 5.94 22.23 0.13 -12.83 16 7 C 0.02 0.36 9.51 22.32 0.21 0.57 16 8 C -0.13 -2.31 9.82 22.26 0.22 -2.09 16 9 C 0.05 1.27 6.35 22.60 0.14 1.41 16 10 Cl -0.03 -1.06 26.02 -2.72 -0.07 -1.13 16 11 C -0.16 -4.94 5.88 -20.07 -0.12 -5.06 16 12 C 0.53 21.87 7.73 86.76 0.67 22.54 16 13 O -0.56 -27.00 13.63 -3.93 -0.05 -27.05 16 14 N -0.70 -29.47 5.02 -449.03 -2.25 -31.73 16 15 C 0.27 14.12 2.56 44.25 0.11 14.23 16 16 H 0.01 0.36 7.58 -2.39 -0.02 0.34 16 17 C -0.13 -6.92 9.26 71.98 0.67 -6.26 16 18 C -0.55 -28.55 8.73 25.60 0.22 -28.33 16 19 H 0.08 3.66 7.74 -2.91 -0.02 3.63 16 20 C 0.02 0.85 5.30 84.65 0.45 1.29 16 21 N -0.92 -52.22 11.32 21.44 0.24 -51.98 16 22 Si 0.97 41.50 29.54 68.60 2.03 43.53 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.02 0.47 9.01 22.52 0.20 0.68 16 27 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.07 0.80 8.10 -2.39 -0.02 0.78 16 29 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.43 2.11 8.96 -96.74 -0.87 1.24 16 31 H 0.19 1.49 7.60 -2.91 -0.02 1.46 16 32 H 0.18 1.97 8.06 -2.92 -0.02 1.95 16 33 H 0.40 14.38 6.57 -92.71 -0.61 13.77 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 3.87 6.07 -2.38 -0.01 3.86 16 37 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 38 H 0.16 3.64 5.96 -2.91 -0.02 3.62 16 Total: -1.00 -76.44 351.80 -2.10 -78.54 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -0.34 Total: 15.70 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 4.34 Total: -11.74 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -3.29 Total: -96.36 kcal Atomic # 8 Polarization: -71.39 SS G_CDS: -4.44 Total: -75.83 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 47.61 SS G_CDS: -0.32 Total: 47.28 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.07 Total: -1.13 kcal Total: -76.44 -2.10 -78.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194663309.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.307 kcal (2) G-P(sol) polarization free energy of solvation -76.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds