Wall clock time and date at job start Sat Apr 11 2020 07:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46832 * 2 1 4 4 N 1.46500 * 109.47412 * 239.99771 * 2 1 3 5 5 S 1.65599 * 120.00291 * 94.99580 * 4 2 1 6 6 O 1.42095 * 106.40298 * 178.54082 * 5 4 2 7 7 O 1.42100 * 106.40005 * 311.46659 * 5 4 2 8 8 C 1.76202 * 107.21507 * 65.00148 * 5 4 2 9 9 C 1.38242 * 119.98864 * 269.72433 * 8 5 4 10 10 C 1.38212 * 120.01597 * 179.72633 * 9 8 5 11 11 C 1.38357 * 119.98203 * 0.55098 * 10 9 8 12 12 Cl 1.73595 * 120.01160 * 179.70065 * 11 10 9 13 13 C 1.38352 * 119.97567 * 359.72668 * 11 10 9 14 14 C 1.38218 * 119.98658 * 359.97438 * 13 11 10 15 15 C 1.50705 * 109.47326 * 119.99342 * 2 1 3 16 16 O 1.21290 * 119.99778 * 119.99799 * 15 2 1 17 17 N 1.34774 * 120.00057 * 300.27672 * 15 2 1 18 18 C 1.46504 * 120.00014 * 359.72685 * 17 15 2 19 19 C 1.37091 * 119.99969 * 179.72135 * 17 15 2 20 20 H 1.08002 * 120.00258 * 22.82745 * 19 17 15 21 21 C 1.38952 * 120.00125 * 202.83005 * 19 17 15 22 22 N 1.31419 * 119.99938 * 11.01438 * 21 19 17 23 23 Si 1.86803 * 120.00197 * 191.00939 * 21 19 17 24 24 H 1.48499 * 109.47134 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46816 * 120.00100 * 23 21 19 26 26 H 1.48497 * 109.47197 * 240.00217 * 23 21 19 27 27 H 1.08999 * 109.47554 * 60.00512 * 1 2 3 28 28 H 1.09002 * 109.46788 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47417 * 300.00233 * 1 2 3 30 30 H 0.96996 * 119.99632 * 275.00206 * 4 2 1 31 31 H 1.08007 * 119.99118 * 0.02562 * 9 8 5 32 32 H 1.07990 * 120.01004 * 180.27241 * 10 9 8 33 33 H 1.08002 * 120.00808 * 179.97438 * 13 11 10 34 34 H 1.08000 * 119.99589 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.47270 * 93.01081 * 18 17 15 36 36 H 1.09000 * 109.46714 * 213.01230 * 18 17 15 37 37 H 1.09004 * 109.46734 * 333.01210 * 18 17 15 38 38 H 0.97001 * 120.00122 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 16 2.4122 0.1770 -2.5505 6 8 2.8777 -0.7637 -3.5084 7 8 1.3246 1.0591 -2.7922 8 6 3.7927 1.1909 -2.1372 9 6 3.5901 2.4638 -1.6374 10 6 4.6726 3.2575 -1.3077 11 6 5.9592 2.7820 -1.4887 12 17 7.3193 3.7811 -1.0821 13 6 6.1614 1.5101 -1.9943 14 6 5.0780 0.7151 -2.3178 15 6 2.0324 -0.7103 1.2306 16 8 2.7297 -1.6965 1.1193 17 7 1.7022 -0.2530 2.4546 18 6 0.8599 0.9381 2.5890 19 6 2.1545 -0.9024 3.5740 20 1 3.0371 -1.5225 3.5190 21 6 1.4775 -0.7631 4.7793 22 7 0.2936 -0.1931 4.8059 23 14 2.2499 -1.3860 6.3620 24 1 3.5769 -1.9822 6.0640 25 1 2.4175 -0.2549 7.3096 26 1 1.3696 -2.4155 6.9707 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 2.1110 -1.6562 -1.1947 31 1 2.5857 2.8364 -1.5000 32 1 4.5142 4.2502 -0.9132 33 1 7.1655 1.1386 -2.1362 34 1 5.2357 -0.2776 -2.7129 35 1 -0.1845 0.6372 2.6712 36 1 1.1506 1.4897 3.4830 37 1 0.9869 1.5737 1.7125 38 1 -0.1789 -0.0955 5.6474 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263855006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:16 Heat of formation + Delta-G solvation = -71.941286 kcal Electronic energy + Delta-G solvation = -26388.685042 eV Core-core repulsion = 22384.965303 eV Total energy + Delta-G solvation = -4003.719739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.50794 -39.01506 -37.22944 -36.84715 -35.85003 -35.32391 -34.54807 -31.84082 -31.46152 -31.27722 -29.50858 -26.28051 -25.14230 -23.48102 -23.30868 -22.91487 -19.63813 -19.45284 -18.31854 -17.67901 -16.99412 -16.62961 -16.28374 -15.72206 -15.62426 -14.94288 -14.67396 -14.49118 -14.33169 -13.91542 -13.90020 -13.70937 -13.37322 -12.99324 -12.70451 -12.15265 -12.09422 -12.07148 -12.03586 -11.96307 -11.86669 -11.61982 -11.35910 -11.24746 -11.19968 -11.08988 -11.04049 -10.74750 -10.37642 -10.37309 -9.58916 -9.41063 -9.36204 -9.10723 -8.45117 -7.80149 -6.40952 -3.98590 0.24158 0.53021 0.93470 1.69202 2.86362 3.08461 3.17701 3.20773 3.27128 3.69626 3.76181 4.05800 4.18995 4.50377 4.51405 4.71723 4.91152 4.98564 5.05609 5.15039 5.20732 5.44164 5.54812 5.55311 5.58533 5.69969 5.74973 5.81019 6.13340 6.19792 6.32783 6.36341 6.54461 6.76013 7.13250 7.19156 7.47771 8.01532 8.36197 9.06762 9.29457 9.82324 10.62252 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.010293 B = 0.003958 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.704670 B = 7073.105433 C = 8772.326262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.143 3.857 3 H 0.089 0.911 4 N -1.088 6.088 5 S 2.698 3.302 6 O -0.960 6.960 7 O -0.953 6.953 8 C -0.675 4.675 9 C -0.009 4.009 10 C -0.132 4.132 11 C 0.017 3.983 12 Cl -0.060 7.060 13 C -0.133 4.133 14 C -0.001 4.001 15 C 0.439 3.561 16 O -0.581 6.581 17 N -0.438 5.438 18 C 0.105 3.895 19 C -0.307 4.307 20 H 0.100 0.900 21 C 0.033 3.967 22 N -0.880 5.880 23 Si 0.927 3.073 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.281 1.281 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.427 0.573 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.767 8.402 -11.357 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.032 3.968 3 H 0.107 0.893 4 N -0.850 5.850 5 S 2.786 3.214 6 O -0.950 6.950 7 O -0.943 6.943 8 C -0.761 4.761 9 C -0.028 4.028 10 C -0.151 4.151 11 C -0.010 4.010 12 Cl -0.031 7.031 13 C -0.152 4.152 14 C -0.020 4.020 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.156 5.156 18 C -0.038 4.038 19 C -0.435 4.435 20 H 0.118 0.882 21 C -0.171 4.171 22 N -0.520 5.520 23 Si 0.753 3.247 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.207 1.207 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.264 0.736 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.168 0.832 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.671 8.232 -11.992 15.612 hybrid contribution 1.022 -0.127 1.530 1.844 sum 6.693 8.104 -10.462 14.830 Atomic orbital electron populations 1.22503 0.93198 1.03833 1.04084 1.20533 0.95703 0.95295 0.85259 0.89347 1.55199 1.80849 1.20130 1.28868 1.01827 0.73733 0.73259 0.72594 1.93583 1.82128 1.61436 1.57860 1.93592 1.50438 1.66634 1.83668 1.31239 1.17250 1.10930 1.16655 1.20974 1.00045 0.91093 0.90730 1.21199 0.90449 1.01509 1.01936 1.21291 0.89092 0.92590 0.98046 1.98397 1.43960 1.68873 1.91883 1.21201 1.00531 0.92670 1.00791 1.20920 0.90173 0.99338 0.91563 1.19928 0.86619 0.86850 0.84088 1.90510 1.42207 1.28126 1.85744 1.43525 1.44028 1.23806 1.04287 1.21750 0.96224 0.86899 0.98973 1.19702 1.10334 1.27902 0.85531 0.88243 1.25348 0.94895 0.97015 0.99828 1.69983 1.11475 1.43250 1.27252 0.85852 0.79375 0.78438 0.80988 1.19245 1.20627 1.20655 0.91056 0.91644 0.89339 0.73587 0.83073 0.83792 0.83885 0.83159 0.91411 0.91244 0.95269 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 9.13 37.16 0.34 -2.43 16 2 C 0.14 2.43 2.38 -69.08 -0.16 2.27 16 3 H 0.09 1.30 6.52 -51.93 -0.34 0.96 16 4 N -1.09 -16.82 5.26 -5.88 -0.03 -16.85 16 5 S 2.70 37.96 5.65 -107.50 -0.61 37.35 16 6 O -0.96 -15.18 17.28 -57.17 -0.99 -16.17 16 7 O -0.95 -14.50 16.53 -57.17 -0.95 -15.45 16 8 C -0.68 -8.72 5.82 -39.58 -0.23 -8.95 16 9 C -0.01 -0.11 8.92 -39.59 -0.35 -0.46 16 10 C -0.13 -1.43 9.83 -39.55 -0.39 -1.82 16 11 C 0.02 0.19 6.32 -39.50 -0.25 -0.06 16 12 Cl -0.06 -0.61 28.96 -51.86 -1.50 -2.11 16 13 C -0.13 -1.46 9.83 -39.55 -0.39 -1.85 16 14 C 0.00 -0.01 9.52 -39.59 -0.38 -0.38 16 15 C 0.44 9.84 7.10 -10.98 -0.08 9.76 16 16 O -0.58 -14.81 15.69 5.55 0.09 -14.73 16 17 N -0.44 -10.42 3.02 -122.19 -0.37 -10.79 16 18 C 0.11 2.14 7.04 59.85 0.42 2.56 16 19 C -0.31 -8.11 9.28 -14.94 -0.14 -8.25 16 20 H 0.10 2.78 7.41 -52.49 -0.39 2.39 16 21 C 0.03 0.82 5.13 -17.46 -0.09 0.73 16 22 N -0.88 -22.17 10.60 55.50 0.59 -21.58 16 23 Si 0.93 19.98 29.57 -169.99 -5.03 14.95 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H 0.07 0.99 7.64 -51.93 -0.40 0.59 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.09 1.38 4.57 -51.93 -0.24 1.14 16 30 H 0.43 6.64 8.21 -34.47 -0.28 6.36 16 31 H 0.15 1.50 7.61 -52.48 -0.40 1.10 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.15 1.61 7.62 -52.49 -0.40 1.21 16 35 H 0.07 1.42 6.48 -51.93 -0.34 1.09 16 36 H 0.07 1.50 7.13 -51.93 -0.37 1.13 16 37 H 0.03 0.47 5.79 -51.93 -0.30 0.17 16 38 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -32.03 345.70 -9.13 -41.16 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -3.85 Total: 7.87 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -1.70 Total: -8.89 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.19 Total: -49.22 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -1.85 Total: -46.34 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Atomic # 16 Polarization: 37.96 SS G_CDS: -0.61 Total: 37.35 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.03 -9.13 -41.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263855006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.777 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds