Wall clock time and date at job start Sat Apr 11 2020 07:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46832 * 2 1 4 4 N 1.46500 * 109.47412 * 239.99771 * 2 1 3 5 5 S 1.65599 * 120.00291 * 94.99580 * 4 2 1 6 6 O 1.42095 * 106.40298 * 178.54082 * 5 4 2 7 7 O 1.42100 * 106.40005 * 311.46659 * 5 4 2 8 8 C 1.76202 * 107.21507 * 65.00148 * 5 4 2 9 9 C 1.38242 * 119.98864 * 269.72433 * 8 5 4 10 10 C 1.38212 * 120.01597 * 179.72633 * 9 8 5 11 11 C 1.38357 * 119.98203 * 0.55098 * 10 9 8 12 12 Cl 1.73595 * 120.01160 * 179.70065 * 11 10 9 13 13 C 1.38352 * 119.97567 * 359.72668 * 11 10 9 14 14 C 1.38218 * 119.98658 * 359.97438 * 13 11 10 15 15 C 1.50705 * 109.47326 * 119.99342 * 2 1 3 16 16 O 1.21290 * 119.99778 * 119.99799 * 15 2 1 17 17 N 1.34774 * 120.00057 * 300.27672 * 15 2 1 18 18 C 1.46504 * 120.00014 * 359.72685 * 17 15 2 19 19 C 1.37091 * 119.99969 * 179.72135 * 17 15 2 20 20 H 1.08002 * 120.00258 * 22.82745 * 19 17 15 21 21 C 1.38952 * 120.00125 * 202.83005 * 19 17 15 22 22 N 1.31419 * 119.99938 * 11.01438 * 21 19 17 23 23 Si 1.86803 * 120.00197 * 191.00939 * 21 19 17 24 24 H 1.48499 * 109.47134 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46816 * 120.00100 * 23 21 19 26 26 H 1.48497 * 109.47197 * 240.00217 * 23 21 19 27 27 H 1.08999 * 109.47554 * 60.00512 * 1 2 3 28 28 H 1.09002 * 109.46788 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47417 * 300.00233 * 1 2 3 30 30 H 0.96996 * 119.99632 * 275.00206 * 4 2 1 31 31 H 1.08007 * 119.99118 * 0.02562 * 9 8 5 32 32 H 1.07990 * 120.01004 * 180.27241 * 10 9 8 33 33 H 1.08002 * 120.00808 * 179.97438 * 13 11 10 34 34 H 1.08000 * 119.99589 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.47270 * 93.01081 * 18 17 15 36 36 H 1.09000 * 109.46714 * 213.01230 * 18 17 15 37 37 H 1.09004 * 109.46734 * 333.01210 * 18 17 15 38 38 H 0.97001 * 120.00122 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 16 2.4122 0.1770 -2.5505 6 8 2.8777 -0.7637 -3.5084 7 8 1.3246 1.0591 -2.7922 8 6 3.7927 1.1909 -2.1372 9 6 3.5901 2.4638 -1.6374 10 6 4.6726 3.2575 -1.3077 11 6 5.9592 2.7820 -1.4887 12 17 7.3193 3.7811 -1.0821 13 6 6.1614 1.5101 -1.9943 14 6 5.0780 0.7151 -2.3178 15 6 2.0324 -0.7103 1.2306 16 8 2.7297 -1.6965 1.1193 17 7 1.7022 -0.2530 2.4546 18 6 0.8599 0.9381 2.5890 19 6 2.1545 -0.9024 3.5740 20 1 3.0371 -1.5225 3.5190 21 6 1.4775 -0.7631 4.7793 22 7 0.2936 -0.1931 4.8059 23 14 2.2499 -1.3860 6.3620 24 1 3.5769 -1.9822 6.0640 25 1 2.4175 -0.2549 7.3096 26 1 1.3696 -2.4155 6.9707 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 2.1110 -1.6562 -1.1947 31 1 2.5857 2.8364 -1.5000 32 1 4.5142 4.2502 -0.9132 33 1 7.1655 1.1386 -2.1362 34 1 5.2357 -0.2776 -2.7129 35 1 -0.1845 0.6372 2.6712 36 1 1.1506 1.4897 3.4830 37 1 0.9869 1.5737 1.7125 38 1 -0.1789 -0.0955 5.6474 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263855006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:15 Heat of formation + Delta-G solvation = -94.284135 kcal Electronic energy + Delta-G solvation = -26389.653901 eV Core-core repulsion = 22384.965303 eV Total energy + Delta-G solvation = -4004.688598 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.72630 -40.35005 -38.42198 -37.66930 -37.03636 -36.93574 -36.19900 -33.68682 -32.31421 -32.16702 -30.89472 -28.00970 -26.86527 -24.53669 -24.36024 -24.11017 -21.07273 -20.74835 -19.38225 -18.93085 -18.79031 -17.60315 -17.46997 -17.39625 -16.79602 -16.23702 -16.10821 -15.79771 -15.77619 -15.33785 -14.77765 -14.76546 -14.70734 -14.35842 -13.94806 -13.60396 -13.36293 -13.33739 -13.26865 -13.15588 -13.05410 -12.90095 -12.82830 -12.80777 -12.58025 -12.32858 -12.24293 -12.08616 -12.07664 -12.01104 -10.99428 -10.83228 -10.28503 -10.26255 -10.18051 -9.66884 -8.31099 -5.96625 -0.79198 -0.47056 0.07866 0.85806 1.36573 1.43540 1.55475 1.77734 1.98010 2.20799 2.30576 2.65815 3.03645 3.11861 3.19224 3.58740 3.70525 3.74375 3.96402 4.08067 4.15835 4.19581 4.37220 4.39390 4.67183 4.71972 4.73914 4.85078 4.91742 4.97088 5.03682 5.07289 5.30033 5.47729 5.50176 5.51123 5.90445 6.12232 6.48578 7.17521 7.46871 8.00124 8.69836 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.010293 B = 0.003958 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.704670 B = 7073.105433 C = 8772.326262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.151 3.849 3 H 0.118 0.882 4 N -1.093 6.093 5 S 2.718 3.282 6 O -0.979 6.979 7 O -0.962 6.962 8 C -0.687 4.687 9 C -0.018 4.018 10 C -0.133 4.133 11 C 0.009 3.991 12 Cl -0.051 7.051 13 C -0.137 4.137 14 C -0.016 4.016 15 C 0.433 3.567 16 O -0.621 6.621 17 N -0.454 5.454 18 C 0.111 3.889 19 C -0.341 4.341 20 H 0.071 0.929 21 C 0.003 3.997 22 N -0.891 5.891 23 Si 0.984 3.016 24 H -0.276 1.276 25 H -0.267 1.267 26 H -0.277 1.277 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.424 0.576 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.807 10.056 -11.435 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.040 3.960 3 H 0.135 0.865 4 N -0.853 5.853 5 S 2.808 3.192 6 O -0.970 6.970 7 O -0.953 6.953 8 C -0.775 4.775 9 C -0.037 4.037 10 C -0.152 4.152 11 C -0.018 4.018 12 Cl -0.021 7.021 13 C -0.156 4.156 14 C -0.035 4.035 15 C 0.221 3.779 16 O -0.508 6.508 17 N -0.172 5.172 18 C -0.031 4.031 19 C -0.469 4.469 20 H 0.089 0.911 21 C -0.199 4.199 22 N -0.530 5.530 23 Si 0.808 3.192 24 H -0.201 1.201 25 H -0.192 1.192 26 H -0.203 1.203 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.261 0.739 31 H 0.188 0.812 32 H 0.186 0.814 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.668 9.897 -12.081 16.614 hybrid contribution 1.077 -0.613 1.514 1.957 sum 6.745 9.284 -10.567 15.600 Atomic orbital electron populations 1.22513 0.91919 1.03668 1.05267 1.20486 0.96532 0.95917 0.83051 0.86493 1.55250 1.81281 1.20205 1.28560 1.01113 0.73582 0.72720 0.71786 1.93555 1.82486 1.62447 1.58493 1.93569 1.51389 1.66563 1.83736 1.31023 1.16750 1.11455 1.18270 1.21280 1.01342 0.90660 0.90445 1.21516 0.90028 1.02433 1.01243 1.21498 0.89735 0.92809 0.97761 1.98402 1.43479 1.68516 1.91741 1.21459 1.01238 0.92659 1.00235 1.21135 0.90370 1.00021 0.92005 1.20848 0.85321 0.86533 0.85230 1.90477 1.43685 1.29990 1.86606 1.43744 1.44524 1.24733 1.04201 1.21754 0.95013 0.86073 1.00271 1.19602 1.10525 1.29327 0.87477 0.91079 1.25977 0.95220 0.96900 1.01849 1.70043 1.11763 1.43078 1.28109 0.85011 0.78114 0.78248 0.77781 1.20089 1.19177 1.20301 0.88748 0.92630 0.89137 0.73898 0.81242 0.81413 0.81944 0.82538 0.92231 0.92902 0.90882 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.14 9.13 71.98 0.66 -4.48 16 2 C 0.15 4.92 2.38 44.25 0.11 5.03 16 3 H 0.12 3.12 6.52 -2.39 -0.02 3.10 16 4 N -1.09 -32.92 5.26 -172.52 -0.91 -33.83 16 5 S 2.72 73.22 5.65 -56.49 -0.32 72.90 16 6 O -0.98 -30.45 17.28 -128.00 -2.21 -32.67 16 7 O -0.96 -27.32 16.53 -128.00 -2.12 -29.44 16 8 C -0.69 -16.73 5.82 22.27 0.13 -16.60 16 9 C -0.02 -0.38 8.92 22.26 0.20 -0.18 16 10 C -0.13 -2.55 9.83 22.29 0.22 -2.33 16 11 C 0.01 0.18 6.32 22.33 0.14 0.33 16 12 Cl -0.05 -0.92 28.96 -2.72 -0.08 -1.00 16 13 C -0.14 -2.81 9.83 22.29 0.22 -2.59 16 14 C -0.02 -0.37 9.52 22.27 0.21 -0.16 16 15 C 0.43 19.43 7.10 87.66 0.62 20.05 16 16 O -0.62 -32.40 15.69 -3.06 -0.05 -32.45 16 17 N -0.45 -21.64 3.02 -658.88 -1.99 -23.63 16 18 C 0.11 4.41 7.04 127.77 0.90 5.31 16 19 C -0.34 -18.40 9.28 84.04 0.78 -17.62 16 20 H 0.07 4.15 7.41 -2.91 -0.02 4.13 16 21 C 0.00 0.15 5.13 84.93 0.44 0.58 16 22 N -0.89 -44.50 10.60 21.66 0.23 -44.27 16 23 Si 0.98 40.92 29.57 68.60 2.03 42.95 16 24 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 26 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 27 H 0.09 2.36 7.64 -2.39 -0.02 2.34 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 2.63 4.57 -2.38 -0.01 2.62 16 30 H 0.42 13.29 8.21 -96.75 -0.79 12.50 16 31 H 0.17 2.82 7.61 -2.91 -0.02 2.80 16 32 H 0.17 2.31 8.06 -2.92 -0.02 2.29 16 33 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.16 3.29 7.62 -2.91 -0.02 3.26 16 35 H 0.06 2.44 6.48 -2.39 -0.02 2.43 16 36 H 0.05 2.24 7.13 -2.39 -0.02 2.23 16 37 H 0.07 2.19 5.79 -2.38 -0.01 2.17 16 38 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 Total: -1.00 -68.90 345.70 -0.46 -69.36 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.33 Total: 24.74 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 4.62 Total: -12.66 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -2.67 Total: -101.73 kcal Atomic # 8 Polarization: -90.18 SS G_CDS: -4.38 Total: -94.55 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: 73.22 SS G_CDS: -0.32 Total: 72.90 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -68.90 -0.46 -69.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263855006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.928 kcal (2) G-P(sol) polarization free energy of solvation -68.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds