Wall clock time and date at job start Sat Apr 11 2020 07:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 S 1.65602 * 120.00116 * 2 1 4 4 O 1.42095 * 106.40471 * 311.46410 * 3 2 1 5 5 O 1.42102 * 106.39844 * 178.53941 * 3 2 1 6 6 C 1.76200 * 107.21525 * 65.00374 * 3 2 1 7 7 C 1.38417 * 119.91081 * 89.99732 * 6 3 2 8 8 C 1.38265 * 120.31861 * 180.02562 * 7 6 3 9 9 C 1.38159 * 120.13163 * 359.97438 * 8 7 6 10 10 Cl 1.73597 * 120.09608 * 179.97438 * 9 8 7 11 11 C 1.39693 * 119.81215 * 359.97438 * 9 8 7 12 12 C 1.47766 * 120.15638 * 180.02562 * 11 9 8 13 13 O 1.21565 * 119.99693 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00147 * 180.02562 * 12 11 9 15 15 C 1.46506 * 119.99873 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47035 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.47300 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00339 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00355 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99771 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47174 * 89.99890 * 21 19 17 23 23 H 1.48501 * 109.47062 * 209.99841 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99640 * 21 19 17 25 25 C 1.37905 * 119.90734 * 270.27783 * 6 3 2 26 26 H 1.09004 * 109.47532 * 59.99975 * 1 2 3 27 27 H 1.09004 * 109.47726 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47607 * 299.99715 * 1 2 3 29 29 H 0.97008 * 120.00237 * 180.02562 * 2 1 3 30 30 H 1.08003 * 119.84194 * 0.02562 * 7 6 3 31 31 H 1.07999 * 119.93712 * 179.97438 * 8 7 6 32 32 H 0.96999 * 120.00047 * 359.97438 * 14 12 11 33 33 H 1.09004 * 109.47073 * 299.99562 * 15 14 12 34 34 H 1.09000 * 109.47212 * 59.99645 * 15 14 12 35 35 H 1.09004 * 109.46930 * 299.99770 * 16 15 14 36 36 H 1.09004 * 109.47059 * 59.99372 * 16 15 14 37 37 H 0.96991 * 119.99886 * 180.02562 * 20 19 17 38 38 H 1.07992 * 120.06404 * 359.97438 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2929 1.4341 0.0000 4 8 1.7119 2.2330 -1.0215 5 8 3.6737 1.1002 0.0347 6 6 1.9378 2.2414 1.5254 7 6 2.7404 2.0138 2.6300 8 6 2.4691 2.6423 3.8312 9 6 1.3936 3.5033 3.9362 10 17 1.0535 4.2914 5.4451 11 6 0.5807 3.7377 2.8246 12 6 -0.5712 4.6575 2.9282 13 8 -0.8135 5.2118 3.9826 14 7 -1.3538 4.8810 1.8539 15 6 -2.4961 5.7925 1.9568 16 6 -3.2112 5.8685 0.6063 17 6 -4.3867 6.8055 0.7122 18 1 -4.6024 7.2974 1.6492 19 6 -5.1867 7.0350 -0.3870 20 7 -6.2128 7.8524 -0.2944 21 14 -4.8140 6.1837 -2.0074 22 1 -5.5359 4.8872 -2.0630 23 1 -5.2570 7.0455 -3.1327 24 1 -3.3527 5.9416 -2.1148 25 6 0.8575 3.0937 1.6171 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3635 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.9500 -0.8401 -0.0004 30 1 3.5825 1.3420 2.5531 31 1 3.0991 2.4600 4.6893 32 1 -1.1607 4.4385 1.0127 33 1 -3.1879 5.4241 2.7144 34 1 -2.1447 6.7853 2.2378 35 1 -2.5193 6.2372 -0.1510 36 1 -3.5626 4.8757 0.3249 37 1 -6.7758 8.0134 -1.0676 38 1 0.2302 3.2666 0.7553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273176226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:28 Heat of formation + Delta-G solvation = -111.455512 kcal Electronic energy + Delta-G solvation = -25436.991302 eV Core-core repulsion = 21431.558097 eV Total energy + Delta-G solvation = -4005.433205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46365 -39.64323 -38.42350 -37.67077 -37.03005 -36.68981 -35.89674 -34.86799 -33.14694 -32.35069 -31.58526 -27.18594 -26.83600 -25.09732 -24.44588 -22.75542 -22.01620 -20.58335 -19.62049 -19.00295 -18.75254 -17.84025 -17.70816 -17.31885 -16.91158 -16.64903 -16.35019 -16.09015 -15.68745 -15.57764 -15.30203 -14.84556 -14.66952 -14.50118 -14.33471 -14.01909 -13.79836 -13.37559 -13.33123 -13.27702 -13.08682 -13.03976 -12.89984 -12.58254 -12.52618 -12.17324 -12.12864 -12.06277 -11.76319 -11.50579 -10.77893 -10.75355 -10.58676 -10.48707 -10.39173 -10.07065 -8.29355 -6.36583 -0.87493 -0.65085 -0.37875 0.87177 1.40115 1.43230 1.45772 1.54116 1.97825 2.03332 2.31753 2.37649 2.67009 3.06020 3.08267 3.37095 3.46058 3.85819 3.91116 4.07643 4.23830 4.29076 4.40364 4.42008 4.47601 4.63898 4.68258 4.74378 4.77932 4.90044 5.05745 5.08315 5.28773 5.37156 5.40085 5.62363 6.11773 6.21880 6.43990 6.71214 7.08719 7.28198 8.87351 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.009465 B = 0.003674 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.590674 B = 7618.996093 C =10141.292979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -1.104 6.104 3 S 2.720 3.280 4 O -0.980 6.980 5 O -0.973 6.973 6 C -0.684 4.684 7 C 0.026 3.974 8 C -0.131 4.131 9 C 0.049 3.951 10 Cl -0.033 7.033 11 C -0.160 4.160 12 C 0.543 3.457 13 O -0.552 6.552 14 N -0.712 5.712 15 C 0.147 3.853 16 C -0.016 4.016 17 C -0.538 4.538 18 H 0.030 0.970 19 C 0.007 3.993 20 N -0.950 5.950 21 Si 0.954 3.046 22 H -0.261 1.261 23 H -0.288 1.288 24 H -0.238 1.238 25 C 0.021 3.979 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.432 0.568 30 H 0.188 0.812 31 H 0.181 0.819 32 H 0.410 0.590 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.039 0.961 37 H 0.268 0.732 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.255 -23.156 2.973 32.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.868 5.868 3 S 2.807 3.193 4 O -0.969 6.969 5 O -0.963 6.963 6 C -0.770 4.770 7 C 0.006 3.994 8 C -0.150 4.150 9 C 0.020 3.980 10 Cl -0.003 7.003 11 C -0.165 4.165 12 C 0.330 3.670 13 O -0.431 6.431 14 N -0.364 5.364 15 C 0.024 3.976 16 C -0.054 4.054 17 C -0.576 4.576 18 H 0.049 0.951 19 C -0.191 4.191 20 N -0.590 5.590 21 Si 0.776 3.224 22 H -0.186 1.186 23 H -0.214 1.214 24 H -0.161 1.161 25 C 0.001 3.999 26 H 0.085 0.915 27 H 0.129 0.871 28 H 0.085 0.915 29 H 0.270 0.730 30 H 0.205 0.795 31 H 0.198 0.802 32 H 0.247 0.753 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 22.279 -22.111 3.121 31.543 hybrid contribution -0.779 0.200 0.087 0.809 sum 21.500 -21.911 3.208 30.865 Atomic orbital electron populations 1.21812 0.77259 1.06417 1.02510 1.54972 1.16775 1.23656 1.91409 1.01151 0.72343 0.72852 0.72974 1.93599 1.79077 1.69772 1.54501 1.93579 1.31854 1.83721 1.87115 1.31143 1.06612 1.16040 1.23165 1.21496 0.95482 0.93328 0.89049 1.21573 0.96269 0.96298 1.00843 1.21660 0.94881 0.93781 0.87658 1.98452 1.94473 1.78530 1.28818 1.19831 0.98582 1.02896 0.95212 1.18425 0.82715 0.81888 0.83993 1.90855 1.72262 1.51090 1.28892 1.46023 1.29556 1.47180 1.13621 1.21095 0.85786 0.91832 0.98930 1.19688 0.94836 0.97240 0.93591 1.21223 1.11774 1.26968 0.97658 0.95146 1.26036 0.94143 0.95466 1.03420 1.70068 1.18413 1.38209 1.32343 0.85614 0.80689 0.78656 0.77436 1.18571 1.21376 1.16130 1.21205 0.93511 0.89310 0.95919 0.91452 0.87097 0.91482 0.73011 0.79516 0.80173 0.75281 0.92996 0.93453 0.94645 0.94263 0.92335 0.82095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 11.14 127.77 1.42 1.86 16 2 N -1.10 -8.15 6.19 -206.56 -1.28 -9.43 16 3 S 2.72 38.74 5.73 -56.49 -0.32 38.42 16 4 O -0.98 -21.25 17.00 -128.00 -2.18 -23.43 16 5 O -0.97 -17.32 17.27 -128.00 -2.21 -19.53 16 6 C -0.68 -9.99 5.94 22.23 0.13 -9.86 16 7 C 0.03 0.29 9.51 22.32 0.21 0.50 16 8 C -0.13 -1.78 9.82 22.26 0.22 -1.56 16 9 C 0.05 1.06 6.35 22.60 0.14 1.20 16 10 Cl -0.03 -0.83 26.02 -2.72 -0.07 -0.90 16 11 C -0.16 -3.89 5.88 -20.07 -0.12 -4.01 16 12 C 0.54 17.40 7.77 86.76 0.67 18.07 16 13 O -0.55 -21.49 13.97 -3.92 -0.05 -21.54 16 14 N -0.71 -22.39 5.51 -466.02 -2.57 -24.95 16 15 C 0.15 5.89 5.61 86.38 0.48 6.37 16 16 C -0.02 -0.69 4.16 29.85 0.12 -0.57 16 17 C -0.54 -30.43 9.66 25.60 0.25 -30.18 16 18 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 19 C 0.01 0.38 5.47 84.65 0.46 0.84 16 20 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 21 Si 0.95 42.09 27.47 68.60 1.88 43.97 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.24 -9.45 6.54 99.48 0.65 -8.80 16 25 C 0.02 0.38 9.01 22.53 0.20 0.59 16 26 H 0.07 0.57 8.10 -2.38 -0.02 0.55 16 27 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.43 1.10 8.96 -96.74 -0.87 0.23 16 30 H 0.19 0.92 7.60 -2.91 -0.02 0.90 16 31 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.41 10.24 6.51 -92.71 -0.60 9.64 16 33 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 1.49 7.20 -2.38 -0.02 1.47 16 36 H 0.04 1.58 7.57 -2.39 -0.02 1.56 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.16 2.62 5.96 -2.91 -0.02 2.60 16 Total: -1.00 -81.53 353.01 -2.68 -84.21 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -0.39 Total: 8.69 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 4.21 Total: -16.76 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -3.54 Total: -93.13 kcal Atomic # 8 Polarization: -60.06 SS G_CDS: -4.44 Total: -64.50 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.88 Total: 43.97 kcal Atomic # 16 Polarization: 38.74 SS G_CDS: -0.32 Total: 38.42 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.07 Total: -0.90 kcal Total: -81.53 -2.68 -84.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273176226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.242 kcal (2) G-P(sol) polarization free energy of solvation -81.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds