Wall clock time and date at job start Sat Apr 11 2020 07:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47247 * 2 1 4 4 N 1.46503 * 109.47041 * 185.71632 * 3 2 1 5 5 C 1.36875 * 119.99820 * 278.59024 * 4 3 2 6 6 H 1.08001 * 119.99751 * 180.61590 * 5 4 3 7 7 C 1.39038 * 120.00496 * 0.61470 * 5 4 3 8 8 N 1.31378 * 119.99792 * 9.88075 * 7 5 4 9 9 Si 1.86796 * 120.00404 * 189.88016 * 7 5 4 10 10 H 1.48497 * 109.47097 * 59.99957 * 9 7 5 11 11 H 1.48499 * 109.47171 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47083 * 300.00160 * 9 7 5 13 13 C 1.34775 * 119.99973 * 98.59040 * 4 3 2 14 14 O 1.21601 * 120.00092 * 186.36431 * 13 4 3 15 15 C 1.47667 * 119.99821 * 6.36793 * 13 4 3 16 16 C 1.39707 * 120.13778 * 315.09910 * 15 13 4 17 17 C 1.37849 * 119.85980 * 180.25785 * 16 15 13 18 18 C 1.38554 * 120.14058 * 359.44574 * 17 16 15 19 19 Cl 1.73596 * 119.86535 * 180.27909 * 18 17 16 20 20 C 1.38510 * 120.27306 * 0.55884 * 18 17 16 21 21 S 1.76202 * 119.93091 * 179.70116 * 20 18 17 22 22 N 1.65596 * 107.21955 * 295.02200 * 21 20 18 23 23 O 1.42105 * 106.40226 * 48.56125 * 21 20 18 24 24 O 1.42096 * 106.40349 * 181.47746 * 21 20 18 25 25 C 1.37893 * 120.14081 * 359.71887 * 20 18 17 26 26 H 1.09002 * 109.46577 * 59.99676 * 1 2 3 27 27 H 1.08996 * 109.47074 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47163 * 300.00342 * 1 2 3 29 29 H 1.08999 * 109.47163 * 239.99658 * 2 1 3 30 30 H 1.09004 * 109.46896 * 119.99624 * 2 1 3 31 31 H 1.09002 * 109.47147 * 65.71610 * 3 2 1 32 32 H 1.08999 * 109.46960 * 305.71573 * 3 2 1 33 33 H 0.97001 * 119.99669 * 179.97438 * 8 7 5 34 34 H 1.07993 * 120.06731 * 359.97438 * 16 15 13 35 35 H 1.07999 * 119.93610 * 179.72259 * 17 16 15 36 36 H 0.96998 * 120.00441 * 150.00368 * 22 21 20 37 37 H 0.97008 * 119.99859 * 329.99735 * 22 21 20 38 38 H 1.07996 * 120.07184 * 180.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4987 1.4447 -0.1376 5 6 4.2897 1.2299 0.9585 6 1 5.3651 1.2414 0.8590 7 6 3.7091 0.9969 2.2002 8 7 2.4150 0.7897 2.2916 9 14 4.7688 0.9783 3.7383 10 1 5.4357 2.2957 3.8958 11 1 3.9159 0.7098 4.9239 12 1 5.7975 -0.0859 3.6179 13 6 4.0614 1.6583 -1.3434 14 8 5.2644 1.5460 -1.4815 15 6 3.2173 2.0289 -2.4970 16 6 2.0220 1.3473 -2.7391 17 6 1.2410 1.6944 -3.8207 18 6 1.6334 2.7244 -4.6602 19 17 0.6408 3.1603 -6.0160 20 6 2.8174 3.4039 -4.4255 21 16 3.3116 4.7071 -5.5035 22 7 3.6010 4.0324 -6.9878 23 8 2.1784 5.5501 -5.6599 24 8 4.5654 5.1719 -5.0226 25 6 3.6102 3.0624 -3.3502 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.7627 1.9260 0.9367 32 1 1.5956 1.9850 -0.8344 33 1 2.0099 0.6267 3.1578 34 1 1.7129 0.5472 -2.0830 35 1 0.3190 1.1653 -4.0116 36 1 3.4589 4.5535 -7.7935 37 1 3.9127 3.1160 -7.0516 38 1 4.5329 3.5933 -3.1681 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281283625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:40:41 Heat of formation + Delta-G solvation = -59.607589 kcal Electronic energy + Delta-G solvation = -26548.687302 eV Core-core repulsion = 22545.502391 eV Total energy + Delta-G solvation = -4003.184910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -39.97676 -38.09804 -37.18938 -36.52735 -35.82873 -35.66795 -33.30962 -32.72354 -31.71114 -31.25833 -30.66384 -26.17885 -25.04329 -23.42270 -23.09507 -20.89775 -20.24987 -19.41440 -18.12551 -17.44137 -17.13468 -17.00963 -16.68276 -15.83997 -15.60015 -14.94419 -14.81073 -14.32717 -14.09200 -14.02150 -13.78197 -13.50323 -13.20525 -12.45946 -12.29564 -12.18758 -12.07592 -12.01476 -11.98767 -11.80206 -11.68253 -11.54025 -11.32444 -11.11601 -10.91207 -10.76521 -10.56209 -10.48809 -10.42323 -10.27744 -10.04901 -9.38593 -8.98755 -8.86721 -8.55492 -7.97808 -6.44240 -4.00134 0.30549 0.61807 1.06614 1.78562 2.93147 3.06638 3.13490 3.17053 3.22666 3.60632 3.84764 3.97703 4.35262 4.62972 4.82517 4.91394 5.03936 5.20137 5.30721 5.48364 5.73749 5.77888 5.82255 5.86930 5.87534 5.98771 6.12123 6.27177 6.37261 6.45769 6.62627 6.71420 6.78515 6.91476 7.18531 7.40244 7.61322 7.83584 8.29092 8.94134 9.16759 9.71972 10.40459 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.003613 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.827641 B = 7747.365428 C = 8888.038942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C 0.107 3.893 4 N -0.421 5.421 5 C -0.290 4.290 6 H 0.109 0.891 7 C 0.025 3.975 8 N -0.866 5.866 9 Si 0.937 3.063 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.459 3.541 14 O -0.587 6.587 15 C -0.099 4.099 16 C -0.045 4.045 17 C -0.133 4.133 18 C 0.047 3.953 19 Cl -0.051 7.051 20 C -0.679 4.679 21 S 2.703 3.297 22 N -1.245 6.245 23 O -0.951 6.951 24 O -0.957 6.957 25 C 0.025 3.975 26 H 0.036 0.964 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.037 0.963 33 H 0.270 0.730 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.420 0.580 37 H 0.418 0.582 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 0.939 -13.019 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.016 4.016 4 N -0.136 5.136 5 C -0.417 4.417 6 H 0.127 0.873 7 C -0.177 4.177 8 N -0.507 5.507 9 Si 0.763 3.237 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.248 3.752 14 O -0.473 6.473 15 C -0.104 4.104 16 C -0.064 4.064 17 C -0.152 4.152 18 C 0.019 3.981 19 Cl -0.021 7.021 20 C -0.766 4.766 21 S 2.789 3.211 22 N -0.919 5.919 23 O -0.941 6.941 24 O -0.946 6.946 25 C 0.005 3.995 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.129 0.871 31 H 0.139 0.861 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.178 0.822 35 H 0.161 0.839 36 H 0.250 0.750 37 H 0.245 0.755 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.955 1.854 -12.556 14.020 hybrid contribution -0.061 -1.027 0.457 1.126 sum -6.017 0.827 -12.099 13.537 Atomic orbital electron populations 1.21649 0.97112 1.00233 1.00856 1.22141 0.93963 0.98075 1.02296 1.22192 0.79637 0.97323 1.02477 1.43816 1.06348 1.57226 1.06189 1.19902 0.92443 1.44618 0.84776 0.87300 1.25368 0.96508 0.96307 0.99552 1.70075 1.09782 1.45583 1.25214 0.85812 0.79186 0.79259 0.79472 1.19703 1.20728 1.19726 1.17580 0.87557 0.87490 0.82567 1.90651 1.14345 1.58707 1.83619 1.20549 0.95492 0.96659 0.97663 1.22434 0.91698 0.97858 0.94401 1.21089 1.01564 0.97531 0.95061 1.20503 0.90985 0.95758 0.90883 1.98418 1.69198 1.91901 1.42633 1.30399 1.04900 1.24119 1.17187 1.01621 0.74139 0.72734 0.72600 1.53058 1.86637 1.27247 1.24991 1.93628 1.51619 1.63551 1.85283 1.93626 1.43430 1.77512 1.80037 1.21016 0.96932 0.92578 0.88985 0.94449 0.93866 0.92392 0.95249 0.87054 0.86065 0.94463 0.91897 0.82173 0.83922 0.74994 0.75519 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.87 37.16 0.37 -1.77 16 2 C -0.13 -2.38 4.67 -26.73 -0.12 -2.51 16 3 C 0.11 2.21 4.17 -4.04 -0.02 2.19 16 4 N -0.42 -10.11 2.64 -115.95 -0.31 -10.42 16 5 C -0.29 -7.46 9.49 -15.00 -0.14 -7.60 16 6 H 0.11 2.97 7.19 -52.49 -0.38 2.59 16 7 C 0.02 0.59 5.33 -17.45 -0.09 0.50 16 8 N -0.87 -19.76 7.19 55.50 0.40 -19.36 16 9 Si 0.94 19.19 29.56 -169.99 -5.03 14.17 16 10 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 12 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 13 C 0.46 10.97 7.23 -12.41 -0.09 10.88 16 14 O -0.59 -15.98 16.58 5.28 0.09 -15.89 16 15 C -0.10 -1.91 5.13 -104.96 -0.54 -2.45 16 16 C -0.04 -0.73 7.38 -39.18 -0.29 -1.01 16 17 C -0.13 -1.80 9.81 -39.61 -0.39 -2.18 16 18 C 0.05 0.65 6.31 -39.36 -0.25 0.40 16 19 Cl -0.05 -0.60 26.44 -51.86 -1.37 -1.98 16 20 C -0.68 -10.08 5.90 -39.61 -0.23 -10.31 16 21 S 2.70 35.80 5.60 -107.50 -0.60 35.19 16 22 N -1.25 -10.47 9.30 60.35 0.56 -9.91 16 23 O -0.95 -14.40 16.48 -57.17 -0.94 -15.34 16 24 O -0.96 -15.74 16.96 -57.17 -0.97 -16.71 16 25 C 0.03 0.45 9.19 -39.17 -0.36 0.09 16 26 H 0.04 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.54 6.33 -51.93 -0.33 0.21 16 30 H 0.11 2.41 5.88 -51.93 -0.31 2.11 16 31 H 0.12 2.74 5.79 -51.93 -0.30 2.44 16 32 H 0.04 0.70 4.93 -51.93 -0.26 0.45 16 33 H 0.27 5.89 8.31 -40.82 -0.34 5.55 16 34 H 0.16 2.54 3.66 -52.49 -0.19 2.35 16 35 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.42 2.53 8.96 -34.47 -0.31 2.22 16 37 H 0.42 2.72 8.96 -34.47 -0.31 2.41 16 38 H 0.16 2.85 7.32 -52.49 -0.38 2.47 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -31.25 336.36 -8.85 -40.09 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -3.59 Total: 8.85 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.16 Total: -13.77 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.65 Total: -39.69 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -1.82 Total: -47.94 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal Atomic # 16 Polarization: 35.80 SS G_CDS: -0.60 Total: 35.19 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.37 Total: -1.98 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.25 -8.85 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281283625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.516 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds