Wall clock time and date at job start Sat Apr 11 2020 07:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46735 * 2 1 4 4 C 1.46499 * 120.00114 * 85.39367 * 3 2 1 5 5 C 1.50708 * 109.47071 * 82.68433 * 4 3 2 6 6 H 1.07995 * 119.99980 * 0.02562 * 5 4 3 7 7 C 1.37869 * 119.99651 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00506 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99803 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47257 * 59.99861 * 9 7 5 11 11 H 1.48495 * 109.47465 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47059 * 299.99807 * 9 7 5 13 13 C 1.34775 * 119.99673 * 265.39167 * 3 2 1 14 14 O 1.21556 * 120.00203 * 4.33256 * 13 3 2 15 15 C 1.47782 * 119.99680 * 184.33764 * 13 3 2 16 16 C 1.39634 * 120.13476 * 48.23424 * 15 13 3 17 17 C 1.37874 * 119.86843 * 180.02562 * 16 15 13 18 18 C 1.38529 * 120.13130 * 359.97438 * 17 16 15 19 19 Cl 1.73602 * 119.86796 * 180.02562 * 18 17 16 20 20 C 1.38497 * 120.26599 * 0.03907 * 18 17 16 21 21 S 1.76201 * 119.93105 * 180.02562 * 20 18 17 22 22 N 1.65597 * 107.21649 * 294.99938 * 21 20 18 23 23 O 1.42091 * 106.40515 * 48.54063 * 21 20 18 24 24 O 1.42103 * 106.39886 * 181.46244 * 21 20 18 25 25 C 1.37912 * 120.12875 * 359.67981 * 20 18 17 26 26 H 1.09001 * 109.46824 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47243 * 299.99661 * 1 2 3 28 28 H 1.09000 * 109.47407 * 60.00625 * 1 2 3 29 29 H 1.08994 * 109.47197 * 239.99605 * 2 1 3 30 30 H 1.09004 * 109.47061 * 119.99760 * 2 1 3 31 31 H 1.08999 * 109.47042 * 202.68756 * 4 3 2 32 32 H 1.09002 * 109.46945 * 322.68433 * 4 3 2 33 33 H 0.97001 * 120.00420 * 179.97438 * 8 7 5 34 34 H 1.08004 * 120.06669 * 0.02562 * 16 15 13 35 35 H 1.08004 * 119.93224 * 180.02562 * 17 16 15 36 36 H 0.97000 * 120.00308 * 0.02562 * 22 21 20 37 37 H 0.97008 * 119.99770 * 180.02562 * 22 21 20 38 38 H 1.08004 * 120.06742 * 180.29353 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1663 2.1059 1.2646 5 6 3.4825 1.7409 1.9016 6 1 4.1428 1.0397 1.4131 7 6 3.8440 2.3030 3.1075 8 7 3.0402 3.1573 3.7022 9 14 5.4757 1.8511 3.8967 10 1 6.5865 2.2185 2.9822 11 1 5.6258 2.5855 5.1786 12 1 5.5117 0.3895 4.1570 13 6 2.3312 1.9853 -1.1635 14 8 2.1344 1.4130 -2.2176 15 6 2.9138 3.3435 -1.1575 16 6 3.9845 3.6433 -0.3128 17 6 4.5235 4.9123 -0.3114 18 6 4.0052 5.8889 -1.1460 19 17 4.6895 7.4843 -1.1391 20 6 2.9431 5.5976 -1.9859 21 16 2.2912 6.8463 -3.0444 22 7 1.6392 8.0196 -2.0747 23 8 3.4046 7.4393 -3.6985 24 8 1.2049 6.2533 -3.7427 25 6 2.3994 4.3303 -2.0004 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.1401 3.1787 1.0738 32 1 1.3507 1.8361 1.9355 33 1 3.2944 3.5524 4.5508 34 1 4.3897 2.8826 0.3381 35 1 5.3519 5.1452 0.3413 36 1 1.6714 7.9247 -1.1099 37 1 1.2250 8.8019 -2.4715 38 1 1.5743 4.1029 -2.6591 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281390610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:40:44 Heat of formation + Delta-G solvation = -88.879221 kcal Electronic energy + Delta-G solvation = -26497.232687 eV Core-core repulsion = 22492.778464 eV Total energy + Delta-G solvation = -4004.454223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06732 -38.34344 -37.17023 -36.52612 -35.80800 -35.47753 -33.26183 -33.05967 -31.72175 -31.19404 -29.86778 -27.36846 -24.26298 -23.40576 -23.30442 -22.09651 -19.93485 -19.16242 -17.93317 -17.42183 -16.98936 -16.63778 -16.45604 -16.20060 -15.64865 -15.31024 -15.02219 -14.63905 -14.19307 -14.06040 -13.66574 -13.56184 -13.02015 -12.65435 -12.48799 -12.17537 -12.10876 -12.05944 -11.99198 -11.87304 -11.76558 -11.61325 -11.44731 -11.39477 -11.13565 -10.95023 -10.67564 -10.55230 -10.49873 -10.31615 -9.99297 -9.46041 -9.28839 -8.85042 -8.69808 -7.94696 -6.42020 -4.51525 0.32995 0.67441 1.08558 1.80733 2.90646 3.07252 3.11639 3.15091 3.17496 3.42538 3.66174 3.79342 4.11841 4.45892 4.85254 4.88875 4.99720 5.26379 5.34301 5.46833 5.54816 5.69710 5.75203 5.81387 5.83609 5.91444 6.17404 6.23895 6.33279 6.45195 6.55468 6.58375 6.76373 6.93729 6.99250 7.31132 7.50308 7.78780 8.09178 8.51894 8.72244 9.15876 10.63365 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.004633 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.675856 B = 6041.553090 C = 7810.387552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.585 5.585 4 C 0.230 3.770 5 C -0.551 4.551 6 H 0.066 0.934 7 C 0.072 3.928 8 N -0.879 5.879 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.555 3.445 14 O -0.559 6.559 15 C -0.133 4.133 16 C 0.007 3.993 17 C -0.132 4.132 18 C 0.060 3.940 19 Cl -0.048 7.048 20 C -0.688 4.688 21 S 2.704 3.296 22 N -1.248 6.248 23 O -0.952 6.952 24 O -0.963 6.963 25 C 0.033 3.967 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.269 0.731 34 H 0.183 0.817 35 H 0.147 0.853 36 H 0.418 0.582 37 H 0.419 0.581 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.243 6.920 -4.858 8.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.315 5.315 4 C 0.110 3.890 5 C -0.589 4.589 6 H 0.084 0.916 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.342 3.658 14 O -0.440 6.440 15 C -0.137 4.137 16 C -0.011 4.011 17 C -0.151 4.151 18 C 0.032 3.968 19 Cl -0.018 7.018 20 C -0.775 4.775 21 S 2.792 3.208 22 N -0.923 5.923 23 O -0.941 6.941 24 O -0.952 6.952 25 C 0.013 3.987 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.200 0.800 35 H 0.164 0.836 36 H 0.245 0.755 37 H 0.250 0.750 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.222 6.722 -6.236 9.250 hybrid contribution 0.943 -0.045 1.814 2.045 sum -0.279 6.677 -4.422 8.013 Atomic orbital electron populations 1.22104 0.96585 1.01448 1.02101 1.21303 0.93718 0.83002 1.02788 1.48202 1.61748 1.13824 1.07721 1.19591 0.97670 0.92495 0.79248 1.21414 1.03762 1.27685 1.06062 0.91613 1.24955 0.97456 0.94497 0.96480 1.69903 1.36446 1.27984 1.17181 0.86626 0.83381 0.79079 0.78946 1.19775 1.20932 1.19881 1.18108 0.78331 0.85241 0.84087 1.90727 1.55885 1.66199 1.31200 1.20162 0.99361 0.95103 0.99048 1.22755 0.90638 0.97200 0.90524 1.21202 1.02000 0.92382 0.99524 1.20696 0.93083 0.87490 0.95544 1.98430 1.84103 1.21880 1.97430 1.30171 1.11300 1.14974 1.21054 1.01517 0.73965 0.72944 0.72409 1.52980 1.79167 1.39194 1.20928 1.93632 1.52949 1.75916 1.71582 1.93600 1.54274 1.77330 1.70042 1.20886 0.95700 0.89059 0.93032 0.92229 0.92417 0.92748 0.90754 0.90084 0.94043 0.94280 0.92084 0.80001 0.83563 0.75494 0.75024 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.11 1.97 6.16 -4.04 -0.02 1.95 16 3 N -0.59 -11.47 2.46 -176.19 -0.43 -11.90 16 4 C 0.23 4.92 4.68 -5.19 -0.02 4.89 16 5 C -0.55 -12.43 6.55 -34.44 -0.23 -12.66 16 6 H 0.07 1.49 7.76 -52.49 -0.41 1.08 16 7 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.88 -21.68 13.29 55.43 0.74 -20.95 16 9 Si 0.89 18.32 29.54 -169.99 -5.02 13.30 16 10 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 13 C 0.56 11.19 7.21 -12.36 -0.09 11.10 16 14 O -0.56 -12.30 16.57 5.32 0.09 -12.21 16 15 C -0.13 -2.45 4.72 -104.97 -0.50 -2.95 16 16 C 0.01 0.12 7.72 -39.19 -0.30 -0.18 16 17 C -0.13 -2.07 9.81 -39.61 -0.39 -2.45 16 18 C 0.06 0.90 6.31 -39.38 -0.25 0.65 16 19 Cl -0.05 -0.63 26.44 -51.86 -1.37 -2.00 16 20 C -0.69 -10.37 5.87 -39.61 -0.23 -10.60 16 21 S 2.70 36.33 5.60 -107.50 -0.60 35.72 16 22 N -1.25 -11.40 9.32 60.35 0.56 -10.84 16 23 O -0.95 -14.76 16.48 -57.17 -0.94 -15.70 16 24 O -0.96 -15.41 16.96 -57.17 -0.97 -16.38 16 25 C 0.03 0.56 9.21 -39.19 -0.36 0.20 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.28 7.35 -51.93 -0.38 0.90 16 30 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 31 H 0.04 0.92 5.96 -51.93 -0.31 0.61 16 32 H 0.04 0.89 8.12 -51.93 -0.42 0.47 16 33 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 34 H 0.18 3.48 4.95 -52.48 -0.26 3.22 16 35 H 0.15 2.02 8.06 -52.48 -0.42 1.60 16 36 H 0.42 3.24 8.92 -34.47 -0.31 2.94 16 37 H 0.42 2.75 8.96 -34.47 -0.31 2.44 16 38 H 0.16 2.52 7.33 -52.48 -0.38 2.14 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -29.66 350.17 -8.81 -38.47 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.03 Total: 7.77 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -2.11 Total: -10.57 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.87 Total: -43.68 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.82 Total: -44.29 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.30 kcal Atomic # 16 Polarization: 36.33 SS G_CDS: -0.60 Total: 35.72 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.37 Total: -2.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.66 -8.81 -38.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281390610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.406 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds