Wall clock time and date at job start Sat Apr 11 2020 07:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 C 1.76206 * 107.21926 * 89.99713 * 14 12 2 18 18 C 1.38359 * 119.92229 * 269.72627 * 17 14 12 19 19 C 1.38444 * 120.27901 * 179.76704 * 18 17 14 20 20 Cl 1.73602 * 119.93986 * 180.28047 * 19 18 17 21 21 C 1.38101 * 120.11727 * 0.50661 * 19 18 17 22 22 C 1.39533 * 119.83953 * 359.74839 * 21 19 18 23 23 C 1.47850 * 120.13493 * 180.02562 * 22 21 19 24 24 N 1.34777 * 120.00313 * 359.97438 * 23 22 21 25 25 O 1.21554 * 119.99601 * 179.97438 * 23 22 21 26 26 C 1.37937 * 119.91794 * 89.99853 * 17 14 12 27 27 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 31 31 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 32 32 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 33 33 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 34 34 H 1.08009 * 119.85347 * 0.02562 * 18 17 14 35 35 H 1.08001 * 120.07672 * 179.77362 * 21 19 18 36 36 H 0.97003 * 119.99918 * 359.97438 * 24 23 22 37 37 H 0.97001 * 119.99775 * 179.97438 * 24 23 22 38 38 H 1.07999 * 120.06614 * 359.96028 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 6 1.8962 0.8535 3.4711 18 6 1.4164 2.1344 3.2631 19 6 0.5681 2.7207 4.1869 20 17 -0.0345 4.3256 3.9135 21 6 0.2041 2.0327 5.3277 22 6 0.6893 0.7426 5.5450 23 6 0.3033 0.0000 6.7638 24 7 -0.5183 0.5691 7.6680 25 8 0.7271 -1.1239 6.9503 26 6 1.5400 0.1559 4.6065 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7093 1.1618 -3.4844 31 1 2.4157 -2.7377 0.9716 32 1 1.6239 -2.2853 2.5002 33 1 0.6905 -2.3003 0.9847 34 1 1.7017 2.6777 2.3742 35 1 -0.4548 2.4921 6.0497 36 1 -0.8561 1.4662 7.5193 37 1 -0.7717 0.0816 8.4674 38 1 1.9184 -0.8425 4.7692 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281894989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:40:54 Heat of formation + Delta-G solvation = -85.307160 kcal Electronic energy + Delta-G solvation = -26361.365707 eV Core-core repulsion = 22357.066379 eV Total energy + Delta-G solvation = -4004.299327 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.47712 -38.62834 -36.85821 -36.69638 -36.26451 -35.38548 -34.28962 -32.63897 -31.56565 -31.18278 -29.15924 -25.67791 -25.19291 -24.76956 -23.47519 -21.35325 -20.73175 -19.18561 -18.13936 -17.45610 -16.98568 -16.71316 -16.46589 -16.20456 -15.68821 -15.16575 -15.12982 -15.03306 -14.46607 -14.27592 -13.76284 -13.56049 -13.26640 -12.88611 -12.67494 -12.21187 -12.08750 -11.88258 -11.81663 -11.62504 -11.43624 -11.42668 -11.28229 -11.02431 -10.96876 -10.82764 -10.51880 -10.37577 -10.30546 -10.12490 -10.05812 -9.74653 -9.30715 -9.16382 -8.49645 -8.06250 -6.11070 -4.17626 0.20697 0.55593 0.82496 1.74519 2.30594 3.03623 3.19476 3.26864 3.35362 3.39508 3.57357 4.13840 4.21113 4.37167 4.38008 4.58971 4.71282 4.87839 4.99042 5.20755 5.25288 5.52263 5.56728 5.62044 5.75413 6.10497 6.16073 6.30989 6.37082 6.56710 6.70030 6.74176 6.86934 6.93868 7.34139 7.56858 7.72962 7.83386 7.98502 8.21455 8.84894 9.48501 10.94696 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.013768 B = 0.003851 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.153664 B = 7268.917801 C = 8250.715434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.265 3.735 3 H 0.062 0.938 4 C -0.519 4.519 5 H 0.065 0.935 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.975 5.975 13 C 0.105 3.895 14 S 2.680 3.320 15 O -0.963 6.963 16 O -0.944 6.944 17 C -0.668 4.668 18 C 0.022 3.978 19 C -0.063 4.063 20 Cl -0.053 7.053 21 C -0.033 4.033 22 C -0.153 4.153 23 C 0.569 3.431 24 N -0.851 5.851 25 O -0.529 6.529 26 C 0.042 3.958 27 H 0.010 0.990 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.263 0.737 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.401 0.599 37 H 0.408 0.592 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 4.195 17.285 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.162 3.838 3 H 0.080 0.920 4 C -0.559 4.559 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.816 5.816 13 C -0.041 4.041 14 S 2.766 3.234 15 O -0.953 6.953 16 O -0.934 6.934 17 C -0.749 4.749 18 C 0.002 3.998 19 C -0.091 4.091 20 Cl -0.024 7.024 21 C -0.053 4.053 22 C -0.157 4.157 23 C 0.355 3.645 24 N -0.415 5.415 25 O -0.405 6.405 26 C 0.022 3.978 27 H 0.029 0.971 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.178 0.822 35 H 0.160 0.840 36 H 0.230 0.770 37 H 0.239 0.761 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.852 3.814 17.119 18.198 hybrid contribution -0.938 0.321 -0.272 1.028 sum -5.790 4.135 16.848 18.288 Atomic orbital electron populations 1.22153 0.98156 0.99992 1.00718 1.18864 0.91407 0.93204 0.80306 0.92048 1.21339 1.31685 1.13094 0.89741 0.91665 1.24899 0.94906 0.94994 0.99005 1.69857 1.36519 1.22669 1.23778 0.86429 0.78621 0.79700 0.82613 1.19654 1.21008 1.20867 1.57448 1.70377 1.19631 1.34178 1.21264 1.02162 0.81453 0.99255 1.02575 0.74228 0.73743 0.72808 1.93549 1.67969 1.58811 1.74979 1.93597 1.72946 1.55985 1.70837 1.31836 1.21430 1.05566 1.16115 1.21168 0.88969 0.92251 0.97363 1.20832 1.01720 0.89022 0.97496 1.98399 1.86707 1.20990 1.96265 1.21348 0.95991 0.92757 0.95203 1.19877 1.03363 0.95106 0.97385 1.18029 0.78186 0.85608 0.82708 1.43715 1.51498 1.21060 1.25241 1.90867 1.54107 1.18520 1.77027 1.21145 0.88630 0.99264 0.88762 0.97132 0.88637 0.94524 0.92690 0.92597 0.92935 0.90606 0.82229 0.84045 0.76977 0.76082 0.82335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.95 37.16 0.33 -2.94 16 2 C 0.26 6.16 2.62 -69.08 -0.18 5.98 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.52 -13.46 8.37 -34.44 -0.29 -13.75 16 5 H 0.07 1.69 7.65 -52.48 -0.40 1.29 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.93 11.32 55.43 0.63 -23.30 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.98 -19.39 3.06 -115.85 -0.35 -19.74 16 13 C 0.10 1.80 9.53 59.85 0.57 2.37 16 14 S 2.68 50.54 5.64 -107.50 -0.61 49.93 16 15 O -0.96 -19.06 16.35 -57.17 -0.93 -20.00 16 16 O -0.94 -20.44 15.83 -57.17 -0.91 -21.35 16 17 C -0.67 -10.33 5.97 -39.65 -0.24 -10.57 16 18 C 0.02 0.32 9.30 -39.46 -0.37 -0.05 16 19 C -0.06 -0.75 6.31 -39.56 -0.25 -1.00 16 20 Cl -0.05 -0.57 28.95 -51.86 -1.50 -2.07 16 21 C -0.03 -0.33 9.32 -39.15 -0.36 -0.69 16 22 C -0.15 -1.81 5.87 -104.97 -0.62 -2.43 16 23 C 0.57 6.42 8.05 -12.33 -0.10 6.32 16 24 N -0.85 -5.39 8.82 30.53 0.27 -5.12 16 25 O -0.53 -8.04 17.18 5.32 0.09 -7.95 16 26 C 0.04 0.60 9.06 -39.18 -0.36 0.24 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.10 2.31 6.07 -51.93 -0.32 1.99 16 29 H 0.04 0.75 6.66 -51.93 -0.35 0.40 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.76 7.79 -51.93 -0.40 0.35 16 33 H 0.08 1.25 6.43 -51.93 -0.33 0.92 16 34 H 0.16 2.33 7.60 -52.48 -0.40 1.94 16 35 H 0.14 0.80 6.40 -52.49 -0.34 0.47 16 36 H 0.40 1.38 6.86 -40.82 -0.28 1.10 16 37 H 0.41 1.97 8.93 -40.82 -0.36 1.61 16 38 H 0.16 2.28 7.20 -52.49 -0.38 1.90 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -32.80 349.77 -8.91 -41.71 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -3.90 Total: 1.93 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -1.95 Total: -14.91 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.54 Total: -48.17 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -1.75 Total: -49.30 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 50.54 SS G_CDS: -0.61 Total: 49.93 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.80 -8.91 -41.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281894989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.598 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds