Wall clock time and date at job start Sat Apr 11 2020 07:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50693 * 119.99498 * 2 1 4 4 N 1.46901 * 109.46826 * 121.06916 * 3 2 1 5 5 C 1.46894 * 111.00448 * 67.21533 * 4 3 2 6 6 C 1.50702 * 109.47082 * 285.25955 * 5 4 3 7 7 H 1.08005 * 119.99547 * 354.49362 * 6 5 4 8 8 C 1.37876 * 120.00339 * 174.50049 * 6 5 4 9 9 N 1.31510 * 120.00120 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00039 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47047 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.46845 * 119.99708 * 10 8 6 13 13 H 1.48501 * 109.46680 * 239.99572 * 10 8 6 14 14 C 1.39617 * 110.99979 * 191.16572 * 4 3 2 15 15 S 1.75876 * 125.24209 * 255.94797 * 14 4 3 16 16 C 1.75859 * 91.02888 * 179.97438 * 15 14 4 17 17 S 1.76204 * 125.12460 * 179.97438 * 16 15 14 18 18 C 1.81402 * 104.44683 * 270.02259 * 17 16 15 19 19 O 1.42101 * 104.27185 * 153.95609 * 17 16 15 20 20 O 1.42095 * 104.27822 * 26.09668 * 17 16 15 21 21 C 1.33221 * 109.74475 * 0.22913 * 16 15 14 22 22 C 1.34107 * 125.23759 * 75.90987 * 14 4 3 23 23 N 1.48119 * 122.63741 * 0.02961 * 22 14 4 24 24 O 1.21800 * 119.99934 * 185.04478 * 23 22 14 25 25 O 1.21802 * 119.99917 * 5.03864 * 23 22 14 26 26 H 1.08005 * 119.99698 * 179.97438 * 1 2 3 27 27 H 1.07990 * 120.00466 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.00055 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47776 * 1.06734 * 3 2 1 30 30 H 1.08998 * 109.47387 * 241.06427 * 3 2 1 31 31 H 1.09004 * 109.47343 * 45.25444 * 5 4 3 32 32 H 1.08996 * 109.48058 * 165.25504 * 5 4 3 33 33 H 0.96996 * 120.00776 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47425 * 299.99855 * 18 17 16 35 35 H 1.09000 * 109.47119 * 60.00413 * 18 17 16 36 36 H 1.09004 * 109.46524 * 179.97438 * 18 17 16 37 37 H 1.08005 * 122.50818 * 179.74534 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9272 1.3718 1.1863 5 6 4.0035 0.3750 1.1107 6 6 3.4401 -0.9948 1.3886 7 1 2.4079 -1.1036 1.6874 8 6 4.2422 -2.1090 1.2617 9 7 5.4989 -1.9766 0.8976 10 14 3.5438 -3.8069 1.6070 11 1 2.1162 -3.6849 1.9973 12 1 3.6538 -4.6449 0.3861 13 1 4.3065 -4.4403 2.7126 14 6 3.4464 2.6567 1.3556 15 16 5.0948 3.1426 0.9816 16 6 4.7605 4.7897 1.4993 17 16 5.9238 6.1130 1.4842 18 6 6.7152 6.0385 3.1148 19 8 5.1235 7.2818 1.3714 20 8 6.8473 5.7562 0.4649 21 6 3.4967 4.8847 1.9098 22 6 2.7648 3.7107 1.8278 23 7 1.3431 3.6254 2.2347 24 8 0.7443 4.6316 2.5701 25 8 0.7730 2.5491 2.2338 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3553 2.1335 0.0191 30 1 2.6757 1.3713 -0.8993 31 1 4.4443 0.3911 0.1138 32 1 4.7691 0.6098 1.8501 33 1 6.0631 -2.7604 0.8080 34 1 5.9611 6.1685 3.8910 35 1 7.2013 5.0708 3.2389 36 1 7.4592 6.8313 3.1941 37 1 3.0733 5.8081 2.2766 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292007290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:30 Heat of formation + Delta-G solvation = 3.128499 kcal Electronic energy + Delta-G solvation = -26304.869491 eV Core-core repulsion = 22306.448728 eV Total energy + Delta-G solvation = -3998.420763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.054 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.80947 -38.98810 -37.39833 -37.00772 -36.18573 -36.01959 -33.12279 -32.96171 -30.17790 -29.66470 -27.81888 -26.76309 -24.90679 -23.84562 -22.09957 -20.84432 -19.35130 -19.07764 -18.60998 -18.23670 -17.46584 -17.16778 -16.58361 -16.45429 -16.17379 -16.01192 -15.43025 -14.99814 -14.61310 -14.16384 -13.72599 -13.69673 -13.50303 -13.16058 -12.83349 -12.53833 -12.33867 -12.25044 -12.22982 -11.82192 -11.61590 -11.52075 -11.27091 -11.12440 -11.09387 -10.93428 -10.82341 -10.71117 -10.65288 -10.05561 -9.93124 -9.71482 -9.07840 -8.82048 -8.72565 -8.09552 -6.41389 -4.43816 -0.24981 0.05558 0.71336 0.78211 1.27516 2.07392 2.21670 2.59130 2.80592 3.11546 3.20998 3.25282 3.59311 3.78804 3.95990 4.19864 4.46717 4.67148 4.69739 4.92742 4.94992 5.17919 5.19175 5.33716 5.46935 5.49727 5.64531 6.05190 6.20364 6.42695 6.52796 6.67936 7.05147 7.06419 7.30831 7.38635 7.61661 7.82357 8.06951 8.61164 9.19540 10.69006 Molecular weight = 346.05amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.004149 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.483848 B = 6746.216383 C = 8272.450109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C 0.105 3.895 4 N -0.422 5.422 5 C 0.169 3.831 6 C -0.519 4.519 7 H 0.085 0.915 8 C 0.063 3.937 9 N -0.890 5.890 10 Si 0.902 3.098 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.143 3.857 15 S 0.272 5.728 16 C -0.810 4.810 17 S 2.532 3.468 18 C -0.648 4.648 19 O -0.930 6.930 20 O -0.929 6.929 21 C 0.063 3.937 22 C -0.137 4.137 23 N 0.055 4.945 24 O -0.197 6.197 25 O -0.126 6.126 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.151 0.849 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.268 0.732 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.567 12.033 1.527 12.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.149 4.149 3 C -0.019 4.019 4 N -0.135 5.135 5 C 0.045 3.955 6 C -0.557 4.557 7 H 0.103 0.897 8 C -0.141 4.141 9 N -0.527 5.527 10 Si 0.729 3.271 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.085 4.085 15 S 0.532 5.468 16 C -1.011 5.011 17 S 2.707 3.293 18 C -0.799 4.799 19 O -0.927 6.927 20 O -0.927 6.927 21 C 0.030 3.970 22 C -0.236 4.236 23 N 0.571 4.429 24 O -0.402 6.402 25 O -0.348 6.348 26 H 0.113 0.887 27 H 0.105 0.895 28 H 0.169 0.831 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.477 11.668 0.449 12.184 hybrid contribution -1.574 -0.759 1.160 2.097 sum 1.903 10.909 1.609 11.190 Atomic orbital electron populations 1.23679 0.95799 1.01039 1.03073 1.23385 0.95566 0.98868 0.97104 1.21306 0.94706 0.98350 0.87529 1.58970 1.21239 0.97706 1.35605 1.20488 0.86690 0.90038 0.98259 1.21106 0.98728 0.88515 1.47346 0.89745 1.24978 0.94737 0.99786 0.94614 1.69923 1.05871 1.30831 1.46106 0.86349 0.79629 0.82958 0.78185 1.19101 1.20667 1.20683 1.24950 0.98060 0.92868 0.92614 1.85256 1.09100 0.95101 1.57339 1.35244 1.16163 1.21102 1.28590 1.04508 0.74225 0.73156 0.77371 1.30218 1.14324 1.12386 1.22971 1.93594 1.68365 1.44740 1.86037 1.93611 1.63006 1.83292 1.52766 1.19143 0.90178 0.97440 0.90235 1.20138 0.85617 0.96785 1.21047 1.42857 1.01582 1.00412 0.98028 1.94491 1.66291 1.26925 1.52459 1.94639 1.68048 1.16068 1.56083 0.88653 0.89484 0.83143 0.91249 0.92285 0.95274 0.94037 0.92266 0.84698 0.84565 0.84727 0.80940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.18 14.32 29.01 0.42 -2.76 16 2 C -0.13 -2.37 7.87 -36.03 -0.28 -2.66 16 3 C 0.11 1.88 4.59 -4.98 -0.02 1.86 16 4 N -0.42 -8.25 3.55 -175.01 -0.62 -8.87 16 5 C 0.17 3.72 3.87 -4.98 -0.02 3.70 16 6 C -0.52 -12.50 6.71 -34.44 -0.23 -12.73 16 7 H 0.08 2.05 6.05 -52.48 -0.32 1.73 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.89 -23.19 13.29 55.43 0.74 -22.45 16 10 Si 0.90 19.42 29.54 -169.99 -5.02 14.40 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 C 0.14 2.51 5.48 -15.45 -0.08 2.43 16 15 S 0.27 4.09 21.50 -107.50 -2.31 1.78 16 16 C -0.81 -10.33 6.21 28.98 0.18 -10.15 16 17 S 2.53 25.89 5.94 -107.50 -0.64 25.25 16 18 C -0.65 -3.78 10.80 101.05 1.09 -2.69 16 19 O -0.93 -11.79 17.63 -57.54 -1.01 -12.80 16 20 O -0.93 -12.32 17.77 -57.54 -1.02 -13.34 16 21 C 0.06 0.86 9.31 -41.20 -0.38 0.48 16 22 C -0.14 -2.30 6.60 -81.22 -0.54 -2.84 16 23 N 0.05 1.00 4.38 33.34 0.15 1.15 16 24 O -0.20 -3.54 18.81 -29.46 -0.55 -4.10 16 25 O -0.13 -2.48 16.01 -29.46 -0.47 -2.95 16 26 H 0.10 1.39 8.06 -52.48 -0.42 0.97 16 27 H 0.09 1.33 7.83 -52.49 -0.41 0.92 16 28 H 0.15 3.02 5.35 -52.49 -0.28 2.74 16 29 H 0.07 1.20 6.26 -51.93 -0.33 0.87 16 30 H 0.06 1.00 7.94 -51.93 -0.41 0.58 16 31 H 0.03 0.67 7.87 -51.93 -0.41 0.26 16 32 H 0.04 0.96 7.39 -51.93 -0.38 0.57 16 33 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.14 0.69 8.14 -51.92 -0.42 0.26 16 36 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.17 2.01 7.90 -52.48 -0.41 1.59 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -30.86 348.35 -9.28 -40.13 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -3.78 Total: 0.46 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 0.03 Total: -23.91 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.26 Total: -30.17 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -3.06 Total: -33.19 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: 29.98 SS G_CDS: -2.95 Total: 27.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.86 -9.28 -40.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292007290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.261 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds