Wall clock time and date at job start Sat Apr 11 2020 07:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99900 * 2 1 4 4 H 1.48499 * 109.46927 * 270.00088 * 3 2 1 5 5 H 1.48501 * 109.46999 * 30.00305 * 3 2 1 6 6 H 1.48498 * 109.47098 * 150.00010 * 3 2 1 7 7 C 1.38808 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00270 * 190.92244 * 7 2 1 9 9 N 1.36938 * 120.00033 * 10.64914 * 7 2 1 10 10 C 1.46966 * 120.59198 * 32.02181 * 9 7 2 11 11 C 1.53813 * 108.39919 * 124.76038 * 10 9 7 12 12 N 1.46970 * 108.57692 * 49.63566 * 11 10 9 13 13 C 1.34774 * 120.59184 * 124.66800 * 12 11 10 14 14 O 1.21577 * 119.99796 * 184.89845 * 13 12 11 15 15 C 1.47646 * 120.00032 * 4.90364 * 13 12 11 16 16 C 1.39705 * 120.12931 * 42.62034 * 15 13 12 17 17 C 1.37878 * 119.88015 * 180.02562 * 16 15 13 18 18 Cl 1.73603 * 119.93264 * 179.97438 * 17 16 15 19 19 C 1.38816 * 120.13142 * 359.97438 * 17 16 15 20 20 F 1.35102 * 119.87173 * 180.02562 * 19 17 16 21 21 C 1.38534 * 120.25606 * 359.97438 * 19 17 16 22 22 C 1.38045 * 120.11585 * 359.77203 * 21 19 17 23 23 Cl 1.73599 * 120.06387 * 180.27155 * 22 21 19 24 24 C 1.46965 * 118.81360 * 304.64792 * 12 11 10 25 25 C 1.46960 * 120.59615 * 212.30778 * 9 7 2 26 26 H 0.97005 * 119.99798 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.61099 * 244.54568 * 10 9 7 28 28 H 1.09005 * 109.61050 * 5.05043 * 10 9 7 29 29 H 1.09000 * 109.74004 * 289.84726 * 11 10 9 30 30 H 1.08994 * 109.53213 * 169.29996 * 11 10 9 31 31 H 1.07999 * 120.05612 * 359.97438 * 16 15 13 32 32 H 1.07993 * 119.93980 * 180.02562 * 21 19 17 33 33 H 1.09001 * 109.60839 * 295.48572 * 24 12 11 34 34 H 1.08990 * 109.60858 * 174.97002 * 24 12 11 35 35 H 1.09004 * 109.60779 * 354.93936 * 25 9 7 36 36 H 1.09000 * 109.61506 * 115.45563 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0756 -1.2107 0.1767 9 7 1.3433 -2.3777 -0.2202 10 6 0.1655 -2.4166 -1.0983 11 6 0.4084 -3.4726 -2.1900 12 7 0.8540 -4.7168 -1.5470 13 6 0.1975 -5.8738 -1.7631 14 8 0.5196 -6.8777 -1.1577 15 6 -0.9128 -5.9222 -2.7352 16 6 -0.7970 -5.2696 -3.9650 17 6 -1.8372 -5.3177 -4.8687 18 17 -1.6950 -4.5067 -6.3971 19 6 -2.9979 -6.0133 -4.5589 20 9 -4.0137 -6.0574 -5.4485 21 6 -3.1182 -6.6632 -3.3414 22 6 -2.0812 -6.6263 -2.4310 23 17 -2.2307 -7.4471 -0.9087 24 6 2.0285 -4.6768 -0.6644 25 6 1.7888 -3.6219 0.4228 26 1 -0.4850 0.8401 0.0004 27 1 -0.7162 -2.6846 -0.5161 28 1 0.0197 -1.4393 -1.5585 29 1 1.1771 -3.1207 -2.8780 30 1 -0.5183 -3.6537 -2.7344 31 1 0.1054 -4.7278 -4.2070 32 1 -4.0233 -7.2032 -3.1059 33 1 2.9125 -4.4106 -1.2439 34 1 2.1716 -5.6531 -0.2016 35 1 2.7155 -3.4407 0.9673 36 1 1.0201 -3.9737 1.1108 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293046462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:39 Heat of formation + Delta-G solvation = -23.363054 kcal Electronic energy + Delta-G solvation = -25848.356167 eV Core-core repulsion = 21721.238926 eV Total energy + Delta-G solvation = -4127.117241 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.039 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.40603 -40.54808 -38.66303 -37.15779 -36.75431 -36.47098 -34.02901 -32.14724 -31.10742 -30.73664 -30.07197 -27.09608 -24.59624 -23.78608 -23.31662 -22.65300 -20.85750 -19.29345 -18.18692 -17.81267 -17.23362 -16.41934 -16.25096 -15.78725 -15.55973 -14.99595 -14.77740 -14.50528 -14.47313 -13.95473 -13.76366 -13.54573 -13.36219 -13.34476 -13.09027 -12.71663 -12.49586 -12.09938 -11.75083 -11.40962 -11.37992 -11.18908 -11.04737 -10.90488 -10.81711 -10.56012 -10.29808 -10.14997 -9.93028 -9.72450 -9.30692 -8.96345 -8.65087 -8.38036 -6.73116 -5.90861 -3.41621 0.20964 0.46322 1.53558 1.79343 2.49084 2.99938 3.30165 3.31078 3.37954 3.38803 3.57623 4.10146 4.31612 4.39686 4.56200 4.83074 5.02249 5.16788 5.25587 5.29538 5.34669 5.48547 5.67968 5.75846 5.85863 5.96639 5.99101 6.10302 6.25779 6.33719 6.71865 6.82894 7.12037 7.40671 7.65148 7.71195 8.29362 8.32979 9.07192 9.67368 10.25839 11.16520 Molecular weight = 346.04amu Principal moments of inertia in cm(-1) A = 0.011827 B = 0.003805 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.850138 B = 7357.121780 C = 8747.123271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.007 3.993 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.160 3.840 11 C 0.068 3.932 12 N -0.584 5.584 13 C 0.552 3.448 14 O -0.529 6.529 15 C -0.110 4.110 16 C -0.038 4.038 17 C -0.080 4.080 18 Cl -0.035 7.035 19 C 0.141 3.859 20 F -0.117 7.117 21 C -0.143 4.143 22 C 0.037 3.963 23 Cl -0.019 7.019 24 C 0.097 3.903 25 C 0.131 3.869 26 H 0.256 0.744 27 H 0.025 0.975 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.350 -12.132 -10.052 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.387 4.387 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.033 3.967 11 C -0.056 4.056 12 N -0.316 5.316 13 C 0.338 3.662 14 O -0.407 6.407 15 C -0.114 4.114 16 C -0.057 4.057 17 C -0.108 4.108 18 Cl -0.006 7.006 19 C 0.120 3.880 20 F -0.095 7.095 21 C -0.163 4.163 22 C 0.009 3.991 23 Cl 0.011 6.989 24 C -0.027 4.027 25 C 0.004 3.996 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.294 -12.475 -9.719 16.677 hybrid contribution 0.054 1.036 -0.243 1.065 sum -5.240 -11.439 -9.962 16.049 Atomic orbital electron populations 1.69941 1.05329 1.25797 1.53738 1.25206 0.95418 0.98562 0.99994 0.86231 0.79079 0.83305 0.77764 1.21281 1.21623 1.20327 1.19206 0.90984 0.83664 1.44873 0.91505 1.43964 1.32562 1.03957 1.50849 1.21283 0.88945 0.96995 0.89451 1.23139 0.98992 0.85325 0.98174 1.47984 1.29577 1.07646 1.46383 1.17820 0.82032 0.84031 0.82269 1.90798 1.66634 1.34115 1.49151 1.19902 0.95434 1.00102 0.95994 1.21232 0.98425 0.95544 0.90512 1.20860 0.95757 1.02571 0.91571 1.98414 1.97884 1.77283 1.26997 1.17261 0.84614 0.98187 0.87960 1.91582 1.57181 1.94414 1.66299 1.20879 1.00652 1.02999 0.91747 1.20676 0.93407 0.95365 0.89694 1.98443 1.97577 1.75985 1.26911 1.22294 0.86121 1.01239 0.93032 1.21321 0.98728 0.87081 0.92500 0.93365 0.95715 0.87896 0.91245 0.90831 0.82073 0.82112 0.91524 0.89666 0.91342 0.95699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.81 11.06 55.49 0.61 -24.19 16 2 C 0.01 0.19 5.05 -17.43 -0.09 0.10 16 3 Si 0.91 20.62 29.57 -169.99 -5.03 15.59 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.26 -6.62 9.57 -15.06 -0.14 -6.77 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.27 16 9 N -0.59 -13.83 2.95 -171.76 -0.51 -14.33 16 10 C 0.16 3.49 5.48 -3.36 -0.02 3.48 16 11 C 0.07 1.14 5.19 -3.36 -0.02 1.12 16 12 N -0.58 -9.93 2.95 -173.40 -0.51 -10.45 16 13 C 0.55 9.16 6.93 -12.42 -0.09 9.08 16 14 O -0.53 -9.88 14.85 5.30 0.08 -9.80 16 15 C -0.11 -1.53 5.08 -104.94 -0.53 -2.06 16 16 C -0.04 -0.45 7.14 -39.17 -0.28 -0.73 16 17 C -0.08 -0.89 6.32 -39.50 -0.25 -1.14 16 18 Cl -0.03 -0.37 28.60 -51.86 -1.48 -1.85 16 19 C 0.14 1.52 7.28 -39.26 -0.29 1.24 16 20 F -0.12 -1.25 16.82 2.25 0.04 -1.21 16 21 C -0.14 -1.50 9.79 -39.54 -0.39 -1.88 16 22 C 0.04 0.47 6.33 -39.08 -0.25 0.23 16 23 Cl -0.02 -0.25 26.91 -51.86 -1.40 -1.65 16 24 C 0.10 1.66 6.60 -3.59 -0.02 1.64 16 25 C 0.13 2.62 6.67 -3.60 -0.02 2.59 16 26 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.10 2.49 6.06 -51.93 -0.31 2.18 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.09 4.69 -51.93 -0.24 0.84 16 31 H 0.16 1.76 6.77 -52.49 -0.36 1.41 16 32 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.42 6.99 -51.93 -0.36 1.06 16 35 H 0.07 1.31 7.93 -51.93 -0.41 0.89 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -28.65 331.70 -8.93 -37.57 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -3.35 Total: -1.57 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -2.38 Total: 6.89 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.40 Total: -48.97 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -2.88 Total: -3.50 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.65 -8.93 -37.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293046462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.211 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds