Wall clock time and date at job start Sat Apr 11 2020 07:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99957 * 2 1 4 4 S 1.65599 * 120.00475 * 180.02562 * 2 1 3 5 5 O 1.42095 * 106.40393 * 203.53695 * 4 2 1 6 6 O 1.42104 * 106.39917 * 336.46240 * 4 2 1 7 7 C 1.76205 * 107.21530 * 89.99782 * 4 2 1 8 8 C 1.38438 * 119.90494 * 269.72832 * 7 4 2 9 9 C 1.38290 * 120.33122 * 179.72462 * 8 7 4 10 10 C 1.38137 * 120.13127 * 0.55010 * 9 8 7 11 11 Cl 1.73595 * 120.09313 * 179.70298 * 10 9 8 12 12 C 1.39766 * 119.80890 * 359.72910 * 10 9 8 13 13 C 1.47649 * 120.15990 * 179.97438 * 12 10 9 14 14 O 1.21603 * 120.00339 * 315.59716 * 13 12 10 15 15 N 1.34775 * 120.00206 * 135.58986 * 13 12 10 16 16 C 1.46496 * 120.00599 * 185.17945 * 15 13 12 17 17 C 1.36885 * 120.00000 * 5.17700 * 15 13 12 18 18 H 1.07999 * 119.99825 * 319.19603 * 17 15 13 19 19 C 1.39034 * 120.00158 * 139.18485 * 17 15 13 20 20 N 1.31374 * 120.00028 * 158.77366 * 19 17 15 21 21 Si 1.86802 * 120.00159 * 338.78157 * 19 17 15 22 22 H 1.48502 * 109.46855 * 92.90114 * 21 19 17 23 23 H 1.48502 * 109.46988 * 212.89884 * 21 19 17 24 24 H 1.48492 * 109.47094 * 332.90073 * 21 19 17 25 25 C 1.37876 * 119.90826 * 90.00540 * 7 4 2 26 26 H 1.08996 * 109.47283 * 90.00011 * 1 2 3 27 27 H 1.09004 * 109.47146 * 329.99378 * 1 2 3 28 28 H 1.09000 * 109.46491 * 210.00308 * 1 2 3 29 29 H 1.09004 * 109.46902 * 0.02562 * 3 2 1 30 30 H 1.08996 * 109.47307 * 120.00351 * 3 2 1 31 31 H 1.09003 * 109.47578 * 240.00262 * 3 2 1 32 32 H 1.08005 * 119.83904 * 359.97438 * 8 7 4 33 33 H 1.07995 * 119.93383 * 180.25916 * 9 8 7 34 34 H 1.09002 * 109.47119 * 85.38436 * 16 15 13 35 35 H 1.08996 * 109.47498 * 205.39100 * 16 15 13 36 36 H 1.09002 * 109.46782 * 325.39112 * 16 15 13 37 37 H 0.96993 * 120.00135 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.06685 * 359.97438 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4341 -0.0006 5 8 3.5760 -1.1569 0.5438 6 8 1.4114 -2.4067 0.5433 7 6 2.5538 -1.8850 -1.6839 8 6 1.6195 -2.6664 -2.3418 9 6 1.8124 -3.0207 -3.6646 10 6 2.9465 -2.6056 -4.3353 11 17 3.1914 -3.0574 -5.9934 12 6 3.8963 -1.8213 -3.6749 13 6 5.1115 -1.3739 -4.3841 14 8 5.7322 -2.1550 -5.0794 15 7 5.5329 -0.0996 -4.2612 16 6 6.6709 0.3753 -5.0521 17 6 4.8974 0.7511 -3.3973 18 1 3.8203 0.7368 -3.3200 19 6 5.6386 1.6332 -2.6192 20 7 5.0688 2.7061 -2.1191 21 14 7.4448 1.2931 -2.2851 22 1 8.2752 1.9821 -3.3054 23 1 7.8016 1.7964 -0.9343 24 1 7.6933 -0.1695 -2.3500 25 6 3.6906 -1.4633 -2.3404 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 0.8900 0.5139 28 1 -0.3632 -0.8900 0.5139 29 1 1.4891 2.0972 0.0005 30 1 2.8242 1.3265 0.8899 31 1 2.8242 1.3266 -0.8900 32 1 0.7334 -2.9977 -1.8207 33 1 1.0773 -3.6270 -4.1728 34 1 6.3216 0.7017 -6.0317 35 1 7.1466 1.2109 -4.5390 36 1 7.3912 -0.4337 -5.1743 37 1 5.5860 3.3218 -1.5766 38 1 4.4202 -0.8572 -1.8241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299496983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:48 Heat of formation + Delta-G solvation = -59.497526 kcal Electronic energy + Delta-G solvation = -27279.177280 eV Core-core repulsion = 23275.997143 eV Total energy + Delta-G solvation = -4003.180138 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.74764 -37.92481 -37.09220 -36.24457 -35.97049 -35.64004 -35.02801 -32.13113 -31.23764 -30.84623 -27.89223 -26.78558 -25.22263 -24.51904 -23.07949 -22.89212 -19.94281 -18.73857 -18.16844 -17.31759 -16.70121 -16.38024 -16.23089 -16.02494 -15.53443 -14.90842 -14.64744 -14.29514 -14.13750 -13.83935 -13.60384 -13.30083 -12.94766 -12.79498 -12.76330 -12.60077 -12.46388 -12.21173 -12.06643 -11.90017 -11.63367 -11.56267 -11.50285 -11.46991 -11.32711 -10.98901 -10.77692 -10.62578 -10.48812 -10.13180 -9.38857 -8.99090 -8.92630 -8.79978 -8.69266 -7.93617 -6.69164 -4.30250 0.50058 0.84043 1.32067 2.28791 2.94129 3.01412 3.15336 3.23624 3.32664 3.81180 3.92416 3.99372 4.17259 4.44748 4.73007 4.89548 4.91697 5.07066 5.40994 5.45195 5.47396 5.57183 5.68964 5.75523 5.93306 5.96506 6.01073 6.07213 6.13535 6.17846 6.23154 6.34989 6.39098 6.44711 6.64452 6.84724 7.14873 7.83712 8.01230 8.70998 9.09332 9.44066 10.38901 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.009270 B = 0.006897 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.728443 B = 4058.980069 C = 6276.025427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.003 6.003 3 C 0.086 3.914 4 S 2.697 3.303 5 O -0.947 6.947 6 O -0.964 6.964 7 C -0.695 4.695 8 C -0.006 4.006 9 C -0.149 4.149 10 C 0.047 3.953 11 Cl -0.045 7.045 12 C -0.103 4.103 13 C 0.514 3.486 14 O -0.573 6.573 15 N -0.455 5.455 16 C 0.075 3.925 17 C -0.363 4.363 18 H 0.105 0.895 19 C 0.075 3.925 20 N -0.844 5.844 21 Si 0.872 3.128 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.258 1.258 25 C 0.054 3.946 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.280 0.720 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.268 -3.062 2.196 10.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.843 5.843 3 C -0.059 4.059 4 S 2.787 3.213 5 O -0.937 6.937 6 O -0.955 6.955 7 C -0.782 4.782 8 C -0.026 4.026 9 C -0.168 4.168 10 C 0.018 3.982 11 Cl -0.016 7.016 12 C -0.108 4.108 13 C 0.302 3.698 14 O -0.457 6.457 15 N -0.174 5.174 16 C -0.068 4.068 17 C -0.489 4.489 18 H 0.122 0.878 19 C -0.135 4.135 20 N -0.477 5.477 21 Si 0.698 3.302 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.182 1.182 25 C 0.034 3.966 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.640 -3.674 2.535 9.725 hybrid contribution 0.758 0.285 -0.805 1.142 sum -7.882 -3.389 1.730 8.752 Atomic orbital electron populations 1.21623 0.78562 1.03903 1.02057 1.57251 1.15045 1.22087 1.89890 1.21716 0.96613 0.83599 1.03928 1.01836 0.73201 0.72346 0.73895 1.93603 1.39722 1.84176 1.76190 1.93534 1.66451 1.58800 1.76674 1.31005 1.05048 1.14935 1.27171 1.20823 0.96715 0.91762 0.93316 1.20963 0.97305 1.03555 0.94991 1.21292 0.94587 0.95602 0.86708 1.98387 1.96612 1.90607 1.15972 1.19952 0.96280 0.99586 0.94943 1.17944 0.85586 0.82283 0.83954 1.90694 1.57924 1.53403 1.43721 1.43466 1.29201 1.08173 1.36597 1.21831 0.89980 0.99359 0.95609 1.19079 0.93582 1.16916 1.19324 0.87783 1.25331 0.99011 0.94221 0.94980 1.69695 1.38389 1.08398 1.31192 0.86995 0.84666 0.80588 0.77928 1.19855 1.20761 1.18206 1.21512 0.93659 0.88916 0.92477 0.92735 0.90558 0.90199 0.90436 0.91760 0.89544 0.83804 0.84140 0.93053 0.91619 0.91831 0.90996 0.81317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.63 59.85 0.64 1.50 16 2 N -1.00 -13.83 3.58 -129.20 -0.46 -14.29 16 3 C 0.09 1.24 10.30 59.85 0.62 1.86 16 4 S 2.70 43.76 5.70 -107.50 -0.61 43.15 16 5 O -0.95 -18.37 16.43 -57.17 -0.94 -19.30 16 6 O -0.96 -15.88 15.87 -57.17 -0.91 -16.79 16 7 C -0.69 -11.74 5.97 -39.64 -0.24 -11.98 16 8 C -0.01 -0.09 9.51 -39.49 -0.38 -0.47 16 9 C -0.15 -2.20 9.82 -39.60 -0.39 -2.59 16 10 C 0.05 0.85 6.34 -39.05 -0.25 0.60 16 11 Cl -0.05 -0.79 27.00 -51.86 -1.40 -2.19 16 12 C -0.10 -2.15 5.21 -104.94 -0.55 -2.70 16 13 C 0.51 12.00 6.86 -12.42 -0.09 11.92 16 14 O -0.57 -14.18 15.20 5.28 0.08 -14.10 16 15 N -0.45 -10.63 2.51 -123.35 -0.31 -10.94 16 16 C 0.07 1.58 9.06 59.84 0.54 2.12 16 17 C -0.36 -8.68 6.96 -15.00 -0.10 -8.78 16 18 H 0.10 2.57 6.83 -52.49 -0.36 2.22 16 19 C 0.07 1.79 5.27 -17.45 -0.09 1.70 16 20 N -0.84 -20.38 13.95 55.50 0.77 -19.60 16 21 Si 0.87 19.37 25.23 -169.99 -4.29 15.08 16 22 H -0.27 -5.77 6.61 56.52 0.37 -5.39 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 25 C 0.05 1.08 7.33 -39.17 -0.29 0.79 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 28 H 0.08 0.78 7.02 -51.93 -0.36 0.41 16 29 H 0.08 0.91 7.79 -51.93 -0.40 0.51 16 30 H 0.06 0.93 8.01 -51.93 -0.42 0.51 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.14 1.63 7.60 -52.48 -0.40 1.23 16 33 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.37 3.81 -51.93 -0.20 1.18 16 36 H 0.06 1.31 7.50 -51.93 -0.39 0.92 16 37 H 0.28 6.38 8.31 -40.82 -0.34 6.04 16 38 H 0.17 3.63 6.05 -52.49 -0.32 3.31 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -29.62 342.85 -7.58 -37.20 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.11 Total: 2.64 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.57 Total: -6.02 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.00 Total: -44.84 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -1.77 Total: -50.19 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.29 Total: 15.08 kcal Atomic # 16 Polarization: 43.76 SS G_CDS: -0.61 Total: 43.15 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.40 Total: -2.19 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.62 -7.58 -37.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299496983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.295 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds