Wall clock time and date at job start Sat Apr 11 2020 07:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99957 * 2 1 4 4 S 1.65599 * 120.00475 * 180.02562 * 2 1 3 5 5 O 1.42095 * 106.40393 * 203.53695 * 4 2 1 6 6 O 1.42104 * 106.39917 * 336.46240 * 4 2 1 7 7 C 1.76205 * 107.21530 * 89.99782 * 4 2 1 8 8 C 1.38438 * 119.90494 * 269.72832 * 7 4 2 9 9 C 1.38290 * 120.33122 * 179.72462 * 8 7 4 10 10 C 1.38137 * 120.13127 * 0.55010 * 9 8 7 11 11 Cl 1.73595 * 120.09313 * 179.70298 * 10 9 8 12 12 C 1.39766 * 119.80890 * 359.72910 * 10 9 8 13 13 C 1.47649 * 120.15990 * 179.97438 * 12 10 9 14 14 O 1.21603 * 120.00339 * 315.59716 * 13 12 10 15 15 N 1.34775 * 120.00206 * 135.58986 * 13 12 10 16 16 C 1.46496 * 120.00599 * 185.17945 * 15 13 12 17 17 C 1.36885 * 120.00000 * 5.17700 * 15 13 12 18 18 H 1.07999 * 119.99825 * 319.19603 * 17 15 13 19 19 C 1.39034 * 120.00158 * 139.18485 * 17 15 13 20 20 N 1.31374 * 120.00028 * 158.77366 * 19 17 15 21 21 Si 1.86802 * 120.00159 * 338.78157 * 19 17 15 22 22 H 1.48502 * 109.46855 * 92.90114 * 21 19 17 23 23 H 1.48502 * 109.46988 * 212.89884 * 21 19 17 24 24 H 1.48492 * 109.47094 * 332.90073 * 21 19 17 25 25 C 1.37876 * 119.90826 * 90.00540 * 7 4 2 26 26 H 1.08996 * 109.47283 * 90.00011 * 1 2 3 27 27 H 1.09004 * 109.47146 * 329.99378 * 1 2 3 28 28 H 1.09000 * 109.46491 * 210.00308 * 1 2 3 29 29 H 1.09004 * 109.46902 * 0.02562 * 3 2 1 30 30 H 1.08996 * 109.47307 * 120.00351 * 3 2 1 31 31 H 1.09003 * 109.47578 * 240.00262 * 3 2 1 32 32 H 1.08005 * 119.83904 * 359.97438 * 8 7 4 33 33 H 1.07995 * 119.93383 * 180.25916 * 9 8 7 34 34 H 1.09002 * 109.47119 * 85.38436 * 16 15 13 35 35 H 1.08996 * 109.47498 * 205.39100 * 16 15 13 36 36 H 1.09002 * 109.46782 * 325.39112 * 16 15 13 37 37 H 0.96993 * 120.00135 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.06685 * 359.97438 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4341 -0.0006 5 8 3.5760 -1.1569 0.5438 6 8 1.4114 -2.4067 0.5433 7 6 2.5538 -1.8850 -1.6839 8 6 1.6195 -2.6664 -2.3418 9 6 1.8124 -3.0207 -3.6646 10 6 2.9465 -2.6056 -4.3353 11 17 3.1914 -3.0574 -5.9934 12 6 3.8963 -1.8213 -3.6749 13 6 5.1115 -1.3739 -4.3841 14 8 5.7322 -2.1550 -5.0794 15 7 5.5329 -0.0996 -4.2612 16 6 6.6709 0.3753 -5.0521 17 6 4.8974 0.7511 -3.3973 18 1 3.8203 0.7368 -3.3200 19 6 5.6386 1.6332 -2.6192 20 7 5.0688 2.7061 -2.1191 21 14 7.4448 1.2931 -2.2851 22 1 8.2752 1.9821 -3.3054 23 1 7.8016 1.7964 -0.9343 24 1 7.6933 -0.1695 -2.3500 25 6 3.6906 -1.4633 -2.3404 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 0.8900 0.5139 28 1 -0.3632 -0.8900 0.5139 29 1 1.4891 2.0972 0.0005 30 1 2.8242 1.3265 0.8899 31 1 2.8242 1.3266 -0.8900 32 1 0.7334 -2.9977 -1.8207 33 1 1.0773 -3.6270 -4.1728 34 1 6.3216 0.7017 -6.0317 35 1 7.1466 1.2109 -4.5390 36 1 7.3912 -0.4337 -5.1743 37 1 5.5860 3.3218 -1.5766 38 1 4.4202 -0.8572 -1.8241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299496983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:47 Heat of formation + Delta-G solvation = -79.871984 kcal Electronic energy + Delta-G solvation = -27280.060783 eV Core-core repulsion = 23275.997143 eV Total energy + Delta-G solvation = -4004.063640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.33090 -39.48343 -38.44415 -37.63257 -37.10635 -36.94108 -36.84155 -33.97895 -32.66154 -32.20402 -28.87608 -28.46761 -27.02366 -25.58427 -24.54959 -24.25383 -21.52977 -20.25754 -19.61419 -18.62080 -18.29212 -17.85033 -17.57763 -17.53780 -16.99622 -16.51180 -16.23399 -15.61511 -15.35652 -15.26872 -15.00362 -14.69820 -14.57253 -14.45589 -14.10318 -13.96114 -13.91279 -13.58007 -13.34664 -13.29223 -13.20236 -13.01522 -12.90954 -12.76022 -12.53830 -12.50100 -12.26983 -12.17127 -11.97528 -11.94911 -11.18127 -10.64472 -10.26785 -10.15236 -9.98893 -9.76272 -8.54682 -6.17011 -0.78165 -0.51662 -0.06253 0.90712 1.16632 1.32879 1.41485 1.63893 1.89694 2.15151 2.29583 2.51088 2.63668 2.90140 3.18262 3.61690 3.74252 3.91427 4.03329 4.14891 4.25070 4.36617 4.53169 4.59508 4.63497 4.64842 4.73862 4.79827 4.82572 4.83599 4.95805 5.02045 5.06655 5.18304 5.35031 5.50444 5.59838 5.98486 6.16532 6.86370 7.26059 7.62699 8.56088 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.009270 B = 0.006897 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.728443 B = 4058.980069 C = 6276.025427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.998 5.998 3 C 0.088 3.912 4 S 2.710 3.290 5 O -0.986 6.986 6 O -0.963 6.963 7 C -0.696 4.696 8 C 0.010 3.990 9 C -0.133 4.133 10 C 0.037 3.963 11 Cl -0.044 7.044 12 C -0.137 4.137 13 C 0.508 3.492 14 O -0.595 6.595 15 N -0.467 5.467 16 C 0.071 3.929 17 C -0.358 4.358 18 H 0.090 0.910 19 C 0.052 3.948 20 N -0.861 5.861 21 Si 0.902 3.098 22 H -0.252 1.252 23 H -0.280 1.280 24 H -0.278 1.278 25 C 0.038 3.962 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.188 0.812 33 H 0.185 0.815 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.284 0.716 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.698 -3.640 2.363 12.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.839 5.839 3 C -0.057 4.057 4 S 2.799 3.201 5 O -0.976 6.976 6 O -0.953 6.953 7 C -0.782 4.782 8 C -0.009 4.009 9 C -0.152 4.152 10 C 0.009 3.991 11 Cl -0.015 7.015 12 C -0.142 4.142 13 C 0.297 3.703 14 O -0.481 6.481 15 N -0.187 5.187 16 C -0.071 4.071 17 C -0.485 4.485 18 H 0.108 0.892 19 C -0.157 4.157 20 N -0.496 5.496 21 Si 0.728 3.272 22 H -0.178 1.178 23 H -0.206 1.206 24 H -0.203 1.203 25 C 0.017 3.983 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.205 0.795 33 H 0.202 0.798 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.073 -4.243 2.691 12.159 hybrid contribution 1.378 0.399 -0.838 1.662 sum -9.695 -3.844 1.853 10.592 Atomic orbital electron populations 1.21993 0.75966 1.05624 1.03673 1.57096 1.16595 1.20668 1.89500 1.21657 0.97157 0.84833 1.02033 1.01375 0.72499 0.72770 0.73456 1.93553 1.42136 1.84879 1.77048 1.93525 1.66032 1.59237 1.76549 1.31145 1.04463 1.15093 1.27495 1.21390 0.96901 0.89465 0.93191 1.21463 0.96445 1.02352 0.94896 1.21533 0.95205 0.95359 0.87000 1.98383 1.96729 1.90479 1.15872 1.19874 0.96686 1.02075 0.95557 1.18411 0.86249 0.82023 0.83570 1.90651 1.58859 1.53828 1.44755 1.43640 1.29754 1.08373 1.36889 1.21916 0.89608 0.99411 0.96147 1.18901 0.93030 1.16752 1.19791 0.89220 1.25614 1.00758 0.94258 0.95023 1.69706 1.39118 1.08850 1.31896 0.86532 0.83028 0.79281 0.78401 1.17760 1.20599 1.20301 1.21201 0.94587 0.90044 0.92419 0.91184 0.88100 0.89334 0.87411 0.92312 0.92883 0.79536 0.79785 0.91531 0.91489 0.91712 0.90568 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 10.63 127.77 1.36 2.58 16 2 N -1.00 -25.86 3.58 -562.68 -2.02 -27.87 16 3 C 0.09 2.50 10.30 127.77 1.32 3.82 16 4 S 2.71 85.24 5.70 -56.49 -0.32 84.92 16 5 O -0.99 -39.12 16.43 -128.00 -2.10 -41.23 16 6 O -0.96 -29.32 15.87 -128.00 -2.03 -31.35 16 7 C -0.70 -22.75 5.97 22.23 0.13 -22.62 16 8 C 0.01 0.25 9.51 22.33 0.21 0.46 16 9 C -0.13 -3.46 9.82 22.26 0.22 -3.24 16 10 C 0.04 1.31 6.34 22.62 0.14 1.45 16 11 Cl -0.04 -1.50 27.00 -2.72 -0.07 -1.57 16 12 C -0.14 -5.81 5.21 -20.07 -0.10 -5.91 16 13 C 0.51 24.30 6.86 86.73 0.59 24.89 16 14 O -0.60 -30.00 15.20 -4.04 -0.06 -30.06 16 15 N -0.47 -22.36 2.51 -662.42 -1.66 -24.02 16 16 C 0.07 3.04 9.06 127.77 1.16 4.20 16 17 C -0.36 -17.64 6.96 84.10 0.58 -17.06 16 18 H 0.09 4.63 6.83 -2.91 -0.02 4.61 16 19 C 0.05 2.53 5.27 84.95 0.45 2.98 16 20 N -0.86 -42.30 13.95 21.68 0.30 -42.00 16 21 Si 0.90 40.18 25.23 68.60 1.73 41.91 16 22 H -0.25 -10.35 6.61 99.48 0.66 -9.69 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 25 C 0.04 1.53 7.33 22.53 0.17 1.70 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 1.27 7.92 -2.38 -0.02 1.25 16 28 H 0.09 1.39 7.02 -2.39 -0.02 1.38 16 29 H 0.11 2.34 7.79 -2.39 -0.02 2.33 16 30 H 0.06 1.71 8.01 -2.39 -0.02 1.69 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.19 3.20 7.60 -2.91 -0.02 3.17 16 33 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.07 2.80 3.81 -2.39 -0.01 2.79 16 36 H 0.06 2.70 7.50 -2.39 -0.02 2.68 16 37 H 0.28 13.09 8.31 -92.71 -0.77 12.32 16 38 H 0.14 6.45 6.05 -2.91 -0.02 6.43 16 Total: -1.00 -65.61 342.85 1.05 -64.56 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.06 Total: 13.45 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 6.23 Total: -6.74 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -3.38 Total: -93.89 kcal Atomic # 8 Polarization: -98.44 SS G_CDS: -4.20 Total: -102.64 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.73 Total: 41.91 kcal Atomic # 16 Polarization: 85.24 SS G_CDS: -0.32 Total: 84.92 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.07 Total: -1.57 kcal Total: -65.61 1.05 -64.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299496983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.308 kcal (2) G-P(sol) polarization free energy of solvation -65.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds