Wall clock time and date at job start Sat Apr 11 2020 07:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46508 * 120.00305 * 2 1 4 4 S 1.65595 * 120.00104 * 180.02562 * 2 1 3 5 5 O 1.42104 * 106.40746 * 212.26533 * 4 2 1 6 6 O 1.42100 * 106.40052 * 345.18765 * 4 2 1 7 7 C 1.76205 * 107.22076 * 98.72382 * 4 2 1 8 8 C 1.37896 * 119.92913 * 112.68893 * 7 4 2 9 9 C 1.39666 * 119.85923 * 179.77388 * 8 7 4 10 10 C 1.47665 * 120.13877 * 180.27654 * 9 8 7 11 11 O 1.21599 * 119.99989 * 323.23109 * 10 9 8 12 12 N 1.34776 * 119.99771 * 143.22603 * 10 9 8 13 13 C 1.46501 * 120.00429 * 4.66681 * 12 10 9 14 14 C 1.36887 * 119.99953 * 184.66569 * 12 10 9 15 15 H 1.08007 * 119.99861 * 320.06803 * 14 12 10 16 16 C 1.39039 * 120.00437 * 140.07074 * 14 12 10 17 17 N 1.31361 * 120.00277 * 166.84849 * 16 14 12 18 18 Si 1.86808 * 119.99581 * 346.85048 * 16 14 12 19 19 H 1.48492 * 109.46930 * 92.12251 * 18 16 14 20 20 H 1.48495 * 109.46832 * 212.12435 * 18 16 14 21 21 H 1.48500 * 109.47013 * 332.12305 * 18 16 14 22 22 C 1.39707 * 119.72305 * 0.50436 * 9 8 7 23 23 C 1.37851 * 119.85837 * 359.74875 * 22 9 8 24 24 C 1.38498 * 119.93181 * 292.97140 * 7 4 2 25 25 Cl 1.73604 * 119.86257 * 359.97438 * 24 7 4 26 26 H 1.09006 * 109.46947 * 275.34825 * 1 2 3 27 27 H 1.09000 * 109.46978 * 35.34249 * 1 2 3 28 28 H 1.08997 * 109.47523 * 155.33983 * 1 2 3 29 29 H 1.08996 * 109.46909 * 240.00107 * 3 2 1 30 30 H 1.08998 * 109.46871 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47050 * 120.00251 * 3 2 1 32 32 H 1.08005 * 120.07240 * 0.02931 * 8 7 4 33 33 H 1.08997 * 109.46749 * 85.34108 * 13 12 10 34 34 H 1.08999 * 109.47071 * 205.34014 * 13 12 10 35 35 H 1.08996 * 109.46809 * 325.34577 * 13 12 10 36 36 H 0.97000 * 120.00296 * 179.97438 * 17 16 14 37 37 H 1.07995 * 120.06796 * 179.72697 * 22 9 8 38 38 H 1.08007 * 119.92843 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2929 -1.4341 -0.0006 5 8 3.4919 -1.2057 0.7272 6 8 1.3522 -2.4407 0.3474 7 6 2.7748 -1.7575 -1.6644 8 6 4.1090 -1.7306 -2.0118 9 6 4.4897 -1.9918 -3.3299 10 6 5.9172 -1.9707 -3.7074 11 8 6.6677 -1.1583 -3.2021 12 7 6.3880 -2.8518 -4.6120 13 6 5.4666 -3.7623 -5.2963 14 6 7.7274 -2.8961 -4.8915 15 1 8.2940 -1.9797 -4.9660 16 6 8.3583 -4.1208 -5.0794 17 7 9.5652 -4.1654 -5.5960 18 14 7.4895 -5.7027 -4.5973 19 1 6.7482 -6.2368 -5.7678 20 1 8.4927 -6.7014 -4.1488 21 1 6.5369 -5.4271 -3.4918 22 6 3.5141 -2.2684 -4.2908 23 6 2.1832 -2.2872 -3.9320 24 6 1.8124 -2.0323 -2.6216 25 17 0.1343 -2.0577 -2.1777 26 1 -0.3633 0.0958 1.0233 27 1 -0.3633 0.8383 -0.5945 28 1 -0.3634 -0.9339 -0.4288 29 1 2.8241 1.3264 -0.8900 30 1 1.4892 2.0972 -0.0005 31 1 2.8242 1.3264 0.8899 32 1 4.8584 -1.5121 -1.2653 33 1 5.0420 -3.2626 -6.1670 34 1 6.0069 -4.6532 -5.6163 35 1 4.6654 -4.0481 -4.6149 36 1 10.0055 -5.0198 -5.7268 37 1 3.8019 -2.4669 -5.3127 38 1 1.4280 -2.5005 -4.6740 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299607681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:53 Heat of formation + Delta-G solvation = -66.956471 kcal Electronic energy + Delta-G solvation = -26540.588204 eV Core-core repulsion = 22537.084622 eV Total energy + Delta-G solvation = -4003.503582 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.52699 -39.64893 -38.60208 -37.79002 -37.19950 -37.03670 -37.00537 -34.39437 -32.74475 -32.25876 -29.02977 -28.47334 -27.44647 -25.71245 -24.76351 -24.39038 -21.70467 -20.11607 -19.43161 -19.09368 -18.65314 -18.26725 -17.66689 -17.40729 -17.19819 -16.59598 -16.31772 -15.70578 -15.55909 -15.41004 -15.23253 -14.95756 -14.68867 -14.42680 -14.35398 -14.29430 -13.83118 -13.77451 -13.52934 -13.46689 -13.34048 -13.19023 -12.96148 -12.85403 -12.67439 -12.56117 -12.26852 -12.21536 -11.85151 -11.59356 -11.19095 -10.74379 -10.65107 -10.18626 -10.04841 -9.84317 -8.58482 -6.29985 -0.93266 -0.68664 -0.28966 0.57013 1.13603 1.27921 1.39362 1.55402 1.79083 2.09490 2.22125 2.41341 2.56102 2.84849 3.06583 3.46752 3.53377 3.74774 3.78808 3.94838 4.07523 4.12494 4.37793 4.44966 4.45664 4.52690 4.55928 4.62925 4.71998 4.72129 4.93665 4.95365 4.96137 4.97713 5.29805 5.43778 5.49095 5.92863 6.39914 6.75272 7.08605 7.62468 8.57390 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.019042 B = 0.003624 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.085928 B = 7724.282973 C = 8193.651051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.993 5.993 3 C 0.077 3.923 4 S 2.697 3.303 5 O -0.982 6.982 6 O -0.956 6.956 7 C -0.681 4.681 8 C 0.017 3.983 9 C -0.138 4.138 10 C 0.492 3.508 11 O -0.608 6.608 12 N -0.466 5.466 13 C 0.040 3.960 14 C -0.338 4.338 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.907 5.907 18 Si 0.955 3.045 19 H -0.227 1.227 20 H -0.289 1.289 21 H -0.263 1.263 22 C -0.033 4.033 23 C -0.111 4.111 24 C 0.057 3.943 25 Cl -0.021 7.021 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.136 0.864 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.284 0.716 37 H 0.180 0.820 38 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.683 4.528 4.303 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.835 5.835 3 C -0.067 4.067 4 S 2.785 3.215 5 O -0.972 6.972 6 O -0.946 6.946 7 C -0.766 4.766 8 C -0.003 4.003 9 C -0.142 4.142 10 C 0.282 3.718 11 O -0.493 6.493 12 N -0.186 5.186 13 C -0.101 4.101 14 C -0.466 4.466 15 H 0.069 0.931 16 C -0.189 4.189 17 N -0.544 5.544 18 Si 0.778 3.222 19 H -0.151 1.151 20 H -0.217 1.217 21 H -0.187 1.187 22 C -0.052 4.052 23 C -0.130 4.130 24 C 0.028 3.972 25 Cl 0.009 6.991 26 H 0.092 0.908 27 H 0.120 0.880 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.137 0.863 31 H 0.084 0.916 32 H 0.154 0.846 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.197 0.803 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -26.107 4.305 5.177 26.962 hybrid contribution 0.932 -0.345 -0.474 1.102 sum -25.175 3.960 4.702 25.915 Atomic orbital electron populations 1.22152 0.76198 1.04828 1.03974 1.57071 1.16285 1.20817 1.89297 1.21857 0.97695 0.84925 1.02262 1.01888 0.72716 0.73475 0.73458 1.93562 1.48542 1.85665 1.69397 1.93585 1.62145 1.56912 1.81938 1.30813 0.99604 1.20181 1.26020 1.20808 0.93894 0.89729 0.95892 1.20224 0.93402 1.04906 0.95669 1.18763 0.87881 0.84841 0.80313 1.90647 1.60377 1.41347 1.56942 1.43636 1.06906 1.33613 1.34427 1.22816 0.94073 0.94521 0.98712 1.18734 0.84167 0.94267 1.49402 0.93102 1.26249 0.96188 1.02115 0.94367 1.69757 1.15501 1.28702 1.40411 0.85779 0.78463 0.77546 0.80398 1.15139 1.21662 1.18687 1.22384 0.91554 0.90397 1.00856 1.21550 0.96754 1.00104 0.94600 1.20800 0.85613 0.96310 0.94465 1.98411 1.13062 1.95983 1.91662 0.90823 0.87971 0.90729 0.92259 0.86262 0.91636 0.84612 0.88192 0.92067 0.88866 0.90616 0.80339 0.78885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 9.73 127.77 1.24 2.17 16 2 N -0.99 -18.56 3.58 -562.69 -2.01 -20.57 16 3 C 0.08 1.18 10.42 127.77 1.33 2.51 16 4 S 2.70 73.31 5.10 -56.49 -0.29 73.02 16 5 O -0.98 -33.50 16.26 -128.00 -2.08 -35.58 16 6 O -0.96 -27.66 15.14 -128.00 -1.94 -29.60 16 7 C -0.68 -19.02 5.91 22.25 0.13 -18.89 16 8 C 0.02 0.60 9.12 22.53 0.21 0.81 16 9 C -0.14 -4.90 5.30 -20.09 -0.11 -5.01 16 10 C 0.49 23.51 7.33 86.73 0.64 24.15 16 11 O -0.61 -35.11 16.74 -4.03 -0.07 -35.18 16 12 N -0.47 -22.17 2.58 -662.39 -1.71 -23.88 16 13 C 0.04 1.34 7.33 127.77 0.94 2.28 16 14 C -0.34 -19.61 9.41 84.10 0.79 -18.82 16 15 H 0.05 3.46 7.92 -2.91 -0.02 3.44 16 16 C 0.01 0.77 5.41 84.96 0.46 1.23 16 17 N -0.91 -53.13 13.95 21.68 0.30 -52.83 16 18 Si 0.95 40.74 24.68 68.60 1.69 42.43 16 19 H -0.23 -8.06 6.67 99.48 0.66 -7.40 16 20 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.26 -11.06 7.03 99.48 0.70 -10.36 16 22 C -0.03 -0.81 7.55 22.53 0.17 -0.64 16 23 C -0.11 -2.08 9.81 22.25 0.22 -1.86 16 24 C 0.06 1.27 6.31 22.41 0.14 1.41 16 25 Cl -0.02 -0.37 22.96 -2.72 -0.06 -0.43 16 26 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.10 0.71 8.03 -2.39 -0.02 0.69 16 28 H 0.07 1.09 4.09 -2.39 -0.01 1.08 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.12 0.95 7.86 -2.39 -0.02 0.93 16 31 H 0.06 1.10 7.99 -2.39 -0.02 1.08 16 32 H 0.14 5.24 7.29 -2.91 -0.02 5.22 16 33 H 0.10 2.57 6.86 -2.39 -0.02 2.55 16 34 H 0.06 2.17 3.05 -2.39 -0.01 2.17 16 35 H 0.09 2.58 5.75 -2.39 -0.01 2.57 16 36 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.18 3.48 5.08 -2.91 -0.01 3.46 16 38 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -82.79 331.99 1.07 -81.72 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 1.07 Total: 11.57 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 6.16 Total: -10.67 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -3.42 Total: -97.28 kcal Atomic # 8 Polarization: -96.27 SS G_CDS: -4.09 Total: -100.36 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.69 Total: 42.43 kcal Atomic # 16 Polarization: 73.31 SS G_CDS: -0.29 Total: 73.02 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.06 Total: -0.43 kcal Total: -82.79 1.07 -81.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299607681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.766 kcal (2) G-P(sol) polarization free energy of solvation -82.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds