Wall clock time and date at job start Sat Apr 11 2020 07:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42905 * 113.99849 * 2 1 4 4 C 1.53004 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47276 * 65.69778 * 4 3 2 6 6 C 1.46500 * 120.00229 * 273.97737 * 5 4 3 7 7 C 1.50703 * 109.47007 * 269.99987 * 6 5 4 8 8 H 1.08006 * 120.00066 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00636 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00526 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99357 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47068 * 90.00796 * 11 9 7 13 13 H 1.48505 * 109.46921 * 210.00057 * 11 9 7 14 14 H 1.48493 * 109.47510 * 330.00174 * 11 9 7 15 15 C 1.34779 * 120.00289 * 93.96832 * 5 4 3 16 16 O 1.21633 * 120.00306 * 184.97456 * 15 5 4 17 17 C 1.47124 * 119.99877 * 4.98119 * 15 5 4 18 18 C 1.37129 * 127.20602 * 260.20155 * 17 15 5 19 19 Br 1.89106 * 126.82362 * 359.97438 * 18 17 15 20 20 N 1.33391 * 106.35061 * 179.97438 * 18 17 15 21 21 N 1.28507 * 109.44764 * 359.97438 * 20 18 17 22 22 N 1.28705 * 110.68117 * 359.73621 * 21 20 18 23 23 C 1.46508 * 126.03296 * 180.25609 * 22 21 20 24 24 H 1.09000 * 109.46912 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47655 * 300.00041 * 1 2 3 26 26 H 1.09001 * 109.47323 * 60.00573 * 1 2 3 27 27 H 1.09001 * 109.47259 * 60.00056 * 3 2 1 28 28 H 1.09000 * 109.46854 * 299.99983 * 3 2 1 29 29 H 1.08990 * 109.47021 * 305.69582 * 4 3 2 30 30 H 1.09003 * 109.46947 * 185.69800 * 4 3 2 31 31 H 1.08999 * 109.47357 * 29.99162 * 6 5 4 32 32 H 1.08998 * 109.47547 * 150.00049 * 6 5 4 33 33 H 0.97001 * 120.00484 * 179.97438 * 10 9 7 34 34 H 1.08996 * 109.46806 * 275.13352 * 23 22 21 35 35 H 1.08989 * 109.47283 * 35.13788 * 23 22 21 36 36 H 1.09005 * 109.46958 * 155.14060 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5793 -1.2578 6 6 4.0242 -0.8787 -1.3929 7 6 5.3803 -1.3797 -0.9674 8 1 6.1326 -0.6818 -0.6305 9 6 5.6608 -2.7290 -1.0081 10 7 6.8444 -3.1661 -0.6373 11 14 4.3595 -3.9362 -1.5901 12 1 4.4767 -4.1205 -3.0589 13 1 4.5560 -5.2418 -0.9102 14 1 3.0113 -3.4063 -1.2637 15 6 4.3422 1.3636 -2.2916 16 8 4.6226 0.8643 -3.3646 17 6 4.4008 2.8239 -2.1221 18 6 3.4581 3.7420 -2.5081 19 35 1.8136 3.3838 -3.3703 20 7 3.9317 4.9378 -2.1546 21 7 5.0777 4.7946 -1.5910 22 7 5.4063 3.5513 -1.5386 23 6 6.6391 3.0092 -0.9617 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8499 0.5585 0.8354 30 1 3.9783 2.1755 0.1027 31 1 3.2570 -1.3267 -0.7614 32 1 3.8452 -1.1533 -2.4324 33 1 7.0416 -4.1155 -0.6656 34 1 7.4345 3.0439 -1.7061 35 1 6.9266 3.6039 -0.0947 36 1 6.4732 1.9764 -0.6551 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311014762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:05 Heat of formation + Delta-G solvation = 12.965481 kcal Electronic energy + Delta-G solvation = -23477.805812 eV Core-core repulsion = 19852.880100 eV Total energy + Delta-G solvation = -3624.925711 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 346.043 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.67462 -40.90218 -38.85592 -36.80765 -36.07817 -34.80917 -33.68587 -31.74046 -31.27712 -29.56722 -29.14021 -27.13312 -25.78519 -24.21997 -23.64471 -23.29187 -20.71731 -19.17094 -18.97954 -18.40350 -17.73086 -17.49583 -17.00424 -16.88350 -16.34821 -16.04768 -15.73096 -15.34828 -14.85288 -14.61723 -14.42225 -14.03312 -13.89286 -13.66617 -13.47522 -13.20157 -13.07281 -12.88255 -12.73920 -12.58298 -12.47723 -12.07185 -12.01153 -11.72474 -11.62283 -11.43837 -11.24775 -10.79103 -10.59244 -10.44514 -9.66519 -8.31156 -6.34899 -0.21473 -0.14823 0.72687 0.82742 1.36360 1.39280 1.42091 1.49290 1.88938 2.34450 2.81912 2.95210 3.06423 3.29647 3.40310 3.91482 3.97652 4.07910 4.09158 4.22865 4.33516 4.39261 4.46109 4.54600 4.59543 4.76124 4.86431 4.89896 4.99443 5.04368 5.36073 5.48045 6.17257 6.21936 6.36490 6.64727 6.85783 6.86743 7.29203 8.84125 Molecular weight = 346.04amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.005351 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.946199 B = 5231.828113 C = 6194.759379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.044 3.956 4 C 0.106 3.894 5 N -0.564 5.564 6 C 0.231 3.769 7 C -0.534 4.534 8 H 0.046 0.954 9 C 0.023 3.977 10 N -0.938 5.938 11 Si 0.929 3.071 12 H -0.277 1.277 13 H -0.278 1.278 14 H -0.240 1.240 15 C 0.584 3.416 16 O -0.548 6.548 17 C -0.016 4.016 18 C 0.002 3.998 19 Br 0.066 6.934 20 N -0.252 5.252 21 N -0.049 5.049 22 N -0.254 5.254 23 C 0.063 3.937 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.020 0.980 33 H 0.268 0.732 34 H 0.115 0.885 35 H 0.149 0.851 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.553 13.884 2.217 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.033 4.033 4 C -0.017 4.017 5 N -0.294 5.294 6 C 0.110 3.890 7 C -0.572 4.572 8 H 0.064 0.936 9 C -0.176 4.176 10 N -0.578 5.578 11 Si 0.753 3.247 12 H -0.203 1.203 13 H -0.203 1.203 14 H -0.163 1.163 15 C 0.367 3.633 16 O -0.425 6.425 17 C -0.154 4.154 18 C -0.217 4.217 19 Br 0.148 6.852 20 N -0.118 5.118 21 N -0.030 5.030 22 N -0.051 5.051 23 C -0.076 4.076 24 H 0.108 0.892 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.167 0.833 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.311 14.563 1.774 18.525 hybrid contribution 0.006 -1.559 -0.429 1.617 sum -11.305 13.004 1.345 17.283 Atomic orbital electron populations 1.22906 0.79750 1.03522 1.00867 1.87965 1.21305 1.27736 1.95539 1.23081 0.92778 0.85513 1.01930 1.21848 0.93884 0.99314 0.86642 1.47814 1.61695 1.07575 1.12273 1.19493 0.96600 0.75541 0.97330 1.21481 0.98454 0.93023 1.44265 0.93563 1.25580 0.97264 1.00064 0.94670 1.69991 1.22908 1.15553 1.49305 0.85980 0.81261 0.78811 0.78689 1.20261 1.20296 1.16327 1.16891 0.78705 0.83098 0.84613 1.90833 1.50152 1.74266 1.27224 1.21899 0.92724 0.94708 1.06111 1.23631 0.98505 0.90965 1.08572 1.96772 1.18079 1.94187 1.76188 1.74941 1.03258 1.21042 1.12524 1.78172 1.09172 0.98404 1.17287 1.48013 1.16510 1.04509 1.36026 1.22967 0.80455 1.01665 1.02491 0.89184 0.92225 0.93760 0.89339 0.93163 0.88231 0.88919 0.92028 0.96144 0.92317 0.86667 0.83295 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -11.80 9.20 -148.98 -1.37 -13.17 16 3 C 0.04 1.12 6.28 71.98 0.45 1.58 16 4 C 0.11 3.09 5.78 86.38 0.50 3.59 16 5 N -0.56 -21.61 2.44 -830.40 -2.03 -23.63 16 6 C 0.23 10.68 4.10 85.63 0.35 11.03 16 7 C -0.53 -28.80 9.94 25.60 0.25 -28.55 16 8 H 0.05 2.67 8.06 -2.91 -0.02 2.65 16 9 C 0.02 1.30 5.47 84.66 0.46 1.76 16 10 N -0.94 -55.80 13.96 21.44 0.30 -55.50 16 11 Si 0.93 42.80 27.47 68.60 1.88 44.68 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 14 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 15 C 0.58 22.96 6.82 86.58 0.59 23.55 16 16 O -0.55 -26.25 16.66 -4.13 -0.07 -26.32 16 17 C -0.02 -0.51 4.85 40.39 0.20 -0.31 16 18 C 0.00 0.07 7.79 84.20 0.66 0.72 16 19 Br 0.07 1.79 33.35 -20.37 -0.68 1.11 16 20 N -0.25 -7.69 12.35 -53.39 -0.66 -8.35 16 21 N -0.05 -1.40 13.14 37.02 0.49 -0.91 16 22 N -0.25 -6.98 3.56 -356.70 -1.27 -8.25 16 23 C 0.06 1.29 11.30 127.77 1.44 2.73 16 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.29 7.55 -2.39 -0.02 1.27 16 29 H 0.10 2.98 8.10 -2.39 -0.02 2.96 16 30 H 0.09 2.32 6.47 -2.39 -0.02 2.31 16 31 H 0.06 2.77 5.83 -2.39 -0.01 2.75 16 32 H 0.02 1.03 6.79 -2.39 -0.02 1.01 16 33 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.15 1.88 8.14 -2.39 -0.02 1.87 16 36 H 0.10 2.38 7.76 -2.38 -0.02 2.36 16 Total: -1.00 -71.05 333.92 3.80 -67.25 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.05 Total: 5.21 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 6.15 Total: 17.88 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -3.17 Total: -96.64 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.44 Total: -39.50 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.68 kcal Atomic # 35 Polarization: 1.79 SS G_CDS: -0.68 Total: 1.11 kcal Total: -71.05 3.80 -67.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311014762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.218 kcal (2) G-P(sol) polarization free energy of solvation -71.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds