Wall clock time and date at job start Sat Apr 11 2020 07:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 S 1.65604 * 120.00299 * 2 1 4 4 O 1.42101 * 106.39751 * 311.45793 * 3 2 1 5 5 O 1.42095 * 106.40239 * 178.53960 * 3 2 1 6 6 C 1.76201 * 107.21639 * 64.99491 * 3 2 1 7 7 C 1.33814 * 122.45185 * 269.97898 * 6 3 2 8 8 S 1.70613 * 110.95401 * 180.02562 * 7 6 3 9 9 C 1.75831 * 91.56640 * 0.02562 * 8 7 6 10 10 C 1.46584 * 125.46082 * 180.02562 * 9 8 7 11 11 O 1.21702 * 119.99955 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99934 * 359.97438 * 10 9 8 13 13 C 1.47067 * 136.05570 * 359.62250 * 12 10 9 14 14 C 1.53750 * 87.88503 * 152.96916 * 13 12 10 15 15 O 1.42901 * 114.39757 * 272.67843 * 14 13 12 16 16 C 1.50703 * 114.26792 * 139.79493 * 14 13 12 17 17 H 1.08002 * 119.99903 * 266.47830 * 16 14 13 18 18 C 1.37872 * 120.00337 * 86.47528 * 16 14 13 19 19 N 1.31520 * 119.99823 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00205 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47054 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47296 * 119.99725 * 20 18 16 23 23 H 1.48500 * 109.47077 * 239.99701 * 20 18 16 24 24 C 1.47065 * 136.05717 * 180.02562 * 12 10 9 25 25 C 1.36652 * 109.08102 * 359.97438 * 9 8 7 26 26 H 1.08998 * 109.47412 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47808 * 300.00272 * 1 2 3 28 28 H 1.08997 * 109.47432 * 59.99968 * 1 2 3 29 29 H 0.97005 * 120.00122 * 179.97438 * 2 1 3 30 30 H 1.07999 * 124.52176 * 0.04082 * 7 6 3 31 31 H 1.08995 * 113.47174 * 267.69836 * 13 12 10 32 32 H 1.09004 * 113.46911 * 38.14647 * 13 12 10 33 33 H 0.96705 * 113.99874 * 273.58939 * 15 14 13 34 34 H 0.97006 * 119.99965 * 180.02562 * 19 18 16 35 35 H 1.08997 * 113.46707 * 321.86292 * 24 12 10 36 36 H 1.09002 * 113.46466 * 92.24401 * 24 12 10 37 37 H 1.07998 * 123.35183 * 180.27463 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2328 -1.0216 5 8 3.6737 1.1002 0.0347 6 6 1.9377 2.2415 1.5253 7 6 0.9069 3.0826 1.6695 8 16 0.8370 3.6950 3.2604 9 6 2.2578 2.7715 3.7298 10 6 2.8693 2.7703 5.0620 11 8 3.8552 2.0904 5.2784 12 7 2.3396 3.5222 6.0473 13 6 1.2043 4.4476 6.1793 14 6 1.1568 4.0862 7.6729 15 8 0.3629 2.9376 7.9773 16 6 0.8872 5.2553 8.5849 17 1 1.7107 5.7981 9.0248 18 6 -0.4108 5.6319 8.8575 19 7 -1.4136 4.9712 8.3214 20 14 -0.7449 7.0815 9.9873 21 1 0.5438 7.6508 10.4564 22 1 -1.5056 8.1205 9.2478 23 1 -1.5387 6.6251 11.1565 24 6 2.6469 3.7836 7.4615 25 6 2.6998 2.0541 2.6540 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3635 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.9500 -0.8401 0.0004 30 1 0.2119 3.3392 0.8837 31 1 1.4687 5.4885 5.9929 32 1 0.3198 4.1313 5.6263 33 1 -0.5751 3.1318 8.1099 34 1 -2.3269 5.2365 8.5129 35 1 2.9917 2.9015 8.0010 36 1 3.2922 4.6490 7.6127 37 1 3.5597 1.4016 2.6883 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331627271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:21 Heat of formation + Delta-G solvation = -78.120168 kcal Electronic energy + Delta-G solvation = -25694.481416 eV Core-core repulsion = 21692.537447 eV Total energy + Delta-G solvation = -4001.943970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.054 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -39.80593 -38.30741 -37.40804 -37.00829 -36.03124 -35.27643 -34.17242 -32.31328 -30.53812 -28.65446 -26.31697 -25.94708 -25.35157 -24.86714 -21.92123 -20.03078 -19.30870 -19.09719 -17.96745 -17.87306 -17.25708 -16.95183 -16.46438 -15.92841 -15.50813 -15.11735 -14.94948 -14.86382 -14.29491 -14.15543 -13.58548 -13.42591 -13.27652 -13.12166 -13.02987 -12.79293 -12.59444 -12.30076 -12.20292 -12.10429 -11.89959 -11.68859 -11.68273 -11.23244 -11.17417 -10.79083 -10.55281 -10.38155 -9.96868 -9.90918 -9.40727 -9.23057 -8.96927 -8.90209 -8.55664 -8.04136 -6.52358 -4.62868 0.13428 0.33599 1.37026 1.70790 1.77297 2.88268 3.06381 3.16375 3.19598 3.29601 3.44757 3.56617 4.08953 4.20659 4.61867 4.69442 4.70636 4.85496 5.09226 5.11708 5.39354 5.39879 5.40946 5.56408 5.63030 5.75632 5.99560 6.07151 6.21604 6.28898 6.44853 6.48711 6.60057 6.95192 7.51421 7.66544 8.23534 8.41608 8.50082 9.09042 9.35183 10.54557 Molecular weight = 346.05amu Principal moments of inertia in cm(-1) A = 0.022207 B = 0.002839 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.569329 B = 9861.630499 C =10394.743926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.120 6.120 3 S 2.716 3.284 4 O -0.957 6.957 5 O -0.955 6.955 6 C -0.697 4.697 7 C -0.154 4.154 8 S 0.300 5.700 9 C -0.253 4.253 10 C 0.607 3.393 11 O -0.547 6.547 12 N -0.632 5.632 13 C 0.061 3.939 14 C 0.246 3.754 15 O -0.569 6.569 16 C -0.534 4.534 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.111 3.889 25 C -0.003 4.003 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.420 0.580 30 H 0.183 0.817 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.395 0.605 34 H 0.275 0.725 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 -4.945 -14.147 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.880 5.880 3 S 2.802 3.198 4 O -0.947 6.947 5 O -0.945 6.945 6 C -0.799 4.799 7 C -0.295 4.295 8 S 0.568 5.432 9 C -0.374 4.374 10 C 0.395 3.605 11 O -0.428 6.428 12 N -0.365 5.365 13 C -0.063 4.063 14 C 0.203 3.797 15 O -0.383 6.383 16 C -0.572 4.572 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.737 3.263 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.011 4.011 25 C -0.033 4.033 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.254 0.746 30 H 0.201 0.799 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.252 0.748 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.250 -4.241 -14.136 14.812 hybrid contribution -0.136 -0.188 0.351 0.420 sum -1.386 -4.429 -13.786 14.546 Atomic orbital electron populations 1.21505 0.78420 1.04394 1.02067 1.55307 1.16253 1.24451 1.91952 1.01345 0.72729 0.72484 0.73198 1.93576 1.78940 1.68640 1.53590 1.93601 1.30623 1.83248 1.87021 1.29611 1.08096 1.19083 1.23097 1.25648 0.99919 0.98892 1.05005 1.83788 1.22098 1.38845 0.98491 1.24941 1.04146 1.08975 0.99348 1.16296 0.82687 0.80283 0.81224 1.90790 1.26310 1.43922 1.81734 1.49630 1.31979 1.42808 1.12050 1.24530 0.86449 0.92647 1.02630 1.19545 0.86464 0.85197 0.88457 1.86060 1.26488 1.33335 1.92383 1.21456 0.93150 1.13301 1.29297 0.90669 1.25086 0.95720 0.97118 0.95075 1.69262 0.99756 1.40965 1.43827 0.86230 0.78662 0.81248 0.80131 1.19350 1.20589 1.20552 1.23387 0.99507 1.00283 0.77935 1.20205 0.98179 0.96693 0.88264 0.89795 0.92068 0.91287 0.74607 0.79934 0.89344 0.91458 0.74838 0.91497 0.91070 0.89217 0.81765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 11.14 59.84 0.67 1.17 16 2 N -1.12 -8.72 6.19 -16.64 -0.10 -8.82 16 3 S 2.72 30.69 5.79 -107.50 -0.62 30.06 16 4 O -0.96 -12.59 17.34 -57.17 -0.99 -13.59 16 5 O -0.95 -13.59 17.64 -57.17 -1.01 -14.60 16 6 C -0.70 -8.79 5.84 -41.41 -0.24 -9.03 16 7 C -0.15 -1.76 10.40 29.18 0.30 -1.46 16 8 S 0.30 4.07 19.88 -107.50 -2.14 1.93 16 9 C -0.25 -4.31 6.45 -36.79 -0.24 -4.54 16 10 C 0.61 12.52 8.03 -12.89 -0.10 12.41 16 11 O -0.55 -12.68 17.62 5.19 0.09 -12.59 16 12 N -0.63 -13.01 3.69 -186.63 -0.69 -13.69 16 13 C 0.06 1.23 6.69 -8.37 -0.06 1.17 16 14 C 0.25 5.57 1.58 -91.12 -0.14 5.43 16 15 O -0.57 -13.99 13.55 -35.23 -0.48 -14.47 16 16 C -0.53 -12.61 8.70 -34.44 -0.30 -12.91 16 17 H 0.08 1.73 7.81 -52.49 -0.41 1.32 16 18 C 0.07 1.71 5.39 -17.82 -0.10 1.61 16 19 N -0.90 -21.38 11.01 55.43 0.61 -20.77 16 20 Si 0.91 18.45 29.54 -169.99 -5.02 13.43 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 C 0.11 2.31 8.02 -8.49 -0.07 2.24 16 25 C 0.00 -0.05 9.53 -40.43 -0.39 -0.43 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 29 H 0.42 2.47 8.96 -34.47 -0.31 2.16 16 30 H 0.18 1.53 7.98 -52.49 -0.42 1.11 16 31 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 32 H 0.07 1.31 6.35 -51.93 -0.33 0.98 16 33 H 0.39 9.75 6.33 45.56 0.29 10.04 16 34 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 35 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.09 1.69 8.10 -51.93 -0.42 1.27 16 37 H 0.16 2.47 7.98 -52.49 -0.42 2.05 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -31.85 347.80 -9.03 -40.88 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -3.26 Total: 11.33 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -0.66 Total: -4.34 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.18 Total: -43.29 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -2.39 Total: -55.25 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.43 kcal Atomic # 16 Polarization: 34.76 SS G_CDS: -2.76 Total: 32.00 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.85 -9.03 -40.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331627271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.239 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds