Wall clock time and date at job start Sat Apr 11 2020 07:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38280 * 127.15620 * 2 1 4 4 C 1.39785 * 126.57136 * 0.02562 * 3 2 1 5 5 H 1.08005 * 119.99495 * 354.60836 * 4 3 2 6 6 C 1.40007 * 120.00091 * 174.60992 * 4 3 2 7 7 N 1.30842 * 120.00591 * 6.04719 * 6 4 3 8 8 Si 1.86804 * 119.99959 * 186.05085 * 6 4 3 9 9 H 1.48502 * 109.47192 * 94.97867 * 8 6 4 10 10 H 1.48499 * 109.47189 * 214.97964 * 8 6 4 11 11 H 1.48510 * 109.46995 * 334.97921 * 8 6 4 12 12 N 1.33124 * 106.86568 * 180.23517 * 3 2 1 13 13 N 1.28513 * 109.75381 * 359.76407 * 12 3 2 14 14 C 1.32302 * 110.21250 * 359.97438 * 13 12 3 15 15 S 1.76202 * 126.26269 * 179.97438 * 14 13 12 16 16 C 1.76197 * 99.99786 * 0.02562 * 15 14 13 17 17 N 1.30589 * 126.08876 * 359.97438 * 16 15 14 18 18 N 1.26099 * 117.64257 * 180.02562 * 17 16 15 19 19 C 1.30441 * 117.69809 * 0.02562 * 18 17 16 20 20 C 1.47719 * 126.07024 * 179.97438 * 19 18 17 21 21 C 1.39603 * 119.75081 * 0.02562 * 20 19 18 22 22 C 1.38321 * 119.04562 * 180.02562 * 21 20 19 23 23 C 1.38844 * 118.53815 * 0.02562 * 22 21 20 24 24 C 1.38277 * 119.41046 * 0.24556 * 23 22 21 25 25 N 1.31726 * 120.91948 * 359.47901 * 24 23 22 26 26 S 1.76470 * 107.86136 * 0.25816 * 19 18 17 27 27 H 1.09001 * 109.47298 * 270.18814 * 1 2 3 28 28 H 1.09007 * 109.47093 * 30.18635 * 1 2 3 29 29 H 1.08999 * 109.47604 * 150.18312 * 1 2 3 30 30 H 0.96998 * 120.00598 * 180.02562 * 7 6 4 31 31 H 1.07994 * 120.48088 * 0.02562 * 21 20 19 32 32 H 1.07997 * 120.73000 * 180.02562 * 22 21 20 33 33 H 1.08001 * 120.29370 * 179.97438 * 23 22 21 34 34 H 1.08004 * 119.53715 * 179.74718 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3002 1.1021 0.0000 4 6 1.9085 2.4439 0.0005 5 1 0.8632 2.7013 -0.0869 6 6 2.8711 3.4542 0.1143 7 7 4.1436 3.1499 0.1011 8 14 2.3388 5.2366 0.2852 9 1 2.2956 5.6046 1.7232 10 1 3.3080 6.1125 -0.4210 11 1 0.9897 5.4096 -0.3108 12 7 3.5488 0.6404 -0.0052 13 7 3.5368 -0.6446 -0.0034 14 6 2.2910 -1.0901 0.0036 15 16 1.7880 -2.7788 0.0079 16 6 3.3637 -3.5673 0.0011 17 7 4.5239 -2.9678 -0.0057 18 7 5.5564 -3.6916 -0.0103 19 6 5.3899 -4.9854 -0.0086 20 6 6.4631 -6.0004 -0.0137 21 6 7.7992 -5.5958 -0.0208 22 6 8.7924 -6.5586 -0.0261 23 6 8.4197 -7.8960 -0.0248 24 6 7.0771 -8.2268 -0.0234 25 7 6.1496 -7.2915 -0.0131 26 16 3.6549 -5.3079 -0.0072 27 1 -0.3634 0.0034 1.0277 28 1 -0.3634 0.8884 -0.5168 29 1 -0.3634 -0.8916 -0.5110 30 1 4.8106 3.8498 0.1803 31 1 8.0538 -4.5463 -0.0220 32 1 9.8348 -6.2761 -0.0312 33 1 9.1718 -8.6711 -0.0293 34 1 6.7849 -9.2666 -0.0265 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340861309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:36 Heat of formation + Delta-G solvation = 162.584136 kcal Electronic energy + Delta-G solvation = -23254.658079 eV Core-core repulsion = 19635.046253 eV Total energy + Delta-G solvation = -3619.611826 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 346.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.48096 -42.04636 -40.95470 -35.65642 -35.18659 -34.17311 -33.51711 -31.55002 -31.06469 -28.31370 -27.92772 -27.36077 -24.85577 -24.31630 -22.89216 -22.56355 -21.91732 -20.20312 -19.30350 -18.96616 -17.87195 -17.29293 -17.15287 -16.93012 -16.73221 -16.49949 -16.16102 -15.79585 -15.08807 -15.01537 -14.74945 -14.50193 -14.05123 -13.95429 -13.85385 -13.29178 -13.02674 -12.86205 -12.82069 -12.75185 -12.34686 -11.98309 -11.76139 -11.61355 -11.43314 -11.11029 -11.04947 -10.89867 -10.64775 -10.53655 -10.35950 -10.32435 -9.83918 -8.65990 -8.56399 -6.63380 -1.25645 -0.68716 0.01678 0.14933 0.27460 0.32049 0.57578 1.15691 1.41173 1.49431 1.59023 1.61213 2.16880 2.46086 2.48708 2.50644 2.78380 3.33674 3.58832 3.84886 3.87759 4.01511 4.05162 4.05994 4.21650 4.46287 4.51315 4.62706 4.78733 4.89139 4.94386 5.09819 5.18996 5.29863 5.51955 5.63999 6.01597 6.21212 6.73185 6.74913 6.90605 7.44053 8.39065 8.66016 Molecular weight = 346.04amu Principal moments of inertia in cm(-1) A = 0.020384 B = 0.002554 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.266284 B =10960.028756 C =12314.678851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.520 5.520 3 C 0.322 3.678 4 C -0.465 4.465 5 H 0.109 0.891 6 C 0.027 3.973 7 N -0.786 5.786 8 Si 1.009 2.991 9 H -0.263 1.263 10 H -0.272 1.272 11 H -0.243 1.243 12 N -0.391 5.391 13 N -0.263 5.263 14 C -0.010 4.010 15 S 0.298 5.702 16 C -0.064 4.064 17 N -0.236 5.236 18 N -0.270 5.270 19 C 0.048 3.952 20 C 0.157 3.843 21 C -0.133 4.133 22 C -0.072 4.072 23 C -0.137 4.137 24 C 0.100 3.900 25 N -0.493 5.493 26 S 0.219 5.781 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.285 0.715 31 H 0.134 0.866 32 H 0.174 0.826 33 H 0.186 0.814 34 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.179 -21.159 0.004 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.223 5.223 3 C 0.077 3.923 4 C -0.505 4.505 5 H 0.126 0.874 6 C -0.195 4.195 7 N -0.410 5.410 8 Si 0.828 3.172 9 H -0.188 1.188 10 H -0.197 1.197 11 H -0.166 1.166 12 N -0.240 5.240 13 N -0.108 5.108 14 C -0.383 4.383 15 S 0.527 5.473 16 C -0.450 4.450 17 N -0.077 5.077 18 N -0.111 5.111 19 C -0.233 4.233 20 C 0.020 3.980 21 C -0.157 4.157 22 C -0.097 4.097 23 C -0.158 4.158 24 C -0.059 4.059 25 N -0.204 5.204 26 S 0.460 5.540 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.152 0.848 32 H 0.191 0.809 33 H 0.203 0.797 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.073 -21.536 -0.008 21.536 hybrid contribution 0.804 2.054 0.070 2.207 sum 0.731 -19.482 0.062 19.496 Atomic orbital electron populations 1.21966 0.74908 1.04862 1.03758 1.46355 1.08049 1.03742 1.64140 1.22128 0.85184 0.89981 0.94977 1.18673 0.96588 0.86249 1.48959 0.87352 1.27068 0.93879 1.06605 0.91904 1.70201 1.02653 1.37064 1.31099 0.84809 0.79703 0.73445 0.79292 1.18825 1.19658 1.16551 1.75472 1.17525 0.99573 1.31418 1.74875 1.16278 1.06102 1.13543 1.26396 0.92053 0.95513 1.24312 1.82397 0.92754 0.85382 1.86800 1.32101 1.04958 0.99158 1.08827 1.72435 0.93159 1.27279 1.14861 1.71459 1.23614 1.01406 1.14609 1.28008 0.96194 0.93921 1.05165 1.18143 0.89121 0.88828 1.01952 1.22255 0.92034 1.02574 0.98818 1.22037 1.00890 0.92549 0.94253 1.22829 0.98260 0.97632 0.97040 1.23441 0.89169 0.99368 0.93949 1.67507 1.40472 0.99638 1.12798 1.85001 1.01375 0.99270 1.68309 0.90311 0.88978 0.88748 0.90499 0.84816 0.80858 0.79717 0.78384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.89 10.89 127.77 1.39 4.28 16 2 N -0.52 -25.12 3.26 -543.63 -1.77 -26.89 16 3 C 0.32 18.71 7.53 133.25 1.00 19.72 16 4 C -0.46 -24.90 9.05 23.07 0.21 -24.70 16 5 H 0.11 5.05 7.27 -2.91 -0.02 5.03 16 6 C 0.03 1.39 5.49 85.27 0.47 1.85 16 7 N -0.79 -45.76 11.96 21.84 0.26 -45.50 16 8 Si 1.01 38.06 29.56 68.60 2.03 40.09 16 9 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 10 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 11 H -0.24 -8.30 7.11 99.48 0.71 -7.59 16 12 N -0.39 -25.54 10.50 -55.04 -0.58 -26.12 16 13 N -0.26 -15.94 9.84 -56.16 -0.55 -16.49 16 14 C -0.01 -0.49 8.07 179.17 1.45 0.96 16 15 S 0.30 10.65 22.25 -56.49 -1.26 9.39 16 16 C -0.06 -2.51 7.83 130.43 1.02 -1.49 16 17 N -0.24 -11.25 9.19 -54.71 -0.50 -11.76 16 18 N -0.27 -11.64 11.21 -49.50 -0.55 -12.20 16 19 C 0.05 1.64 7.50 87.41 0.66 2.30 16 20 C 0.16 4.38 6.75 41.82 0.28 4.67 16 21 C -0.13 -3.13 9.73 22.62 0.22 -2.91 16 22 C -0.07 -1.00 10.16 22.43 0.23 -0.78 16 23 C -0.14 -1.33 10.11 22.42 0.23 -1.11 16 24 C 0.10 1.37 11.17 84.72 0.95 2.32 16 25 N -0.49 -11.40 10.15 -185.09 -1.88 -13.28 16 26 S 0.22 6.56 23.34 -56.49 -1.32 5.24 16 27 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.09 2.84 7.49 -2.38 -0.02 2.82 16 29 H 0.09 2.50 7.85 -2.39 -0.02 2.48 16 30 H 0.28 15.00 8.30 -92.71 -0.77 14.23 16 31 H 0.13 3.53 7.84 -2.91 -0.02 3.50 16 32 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 33 H 0.19 0.19 8.06 -2.91 -0.02 0.16 16 34 H 0.20 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -88.49 337.90 3.15 -85.33 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.18 Total: 7.07 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 8.10 Total: 5.11 kcal Atomic # 7 Polarization: -146.66 SS G_CDS: -5.58 Total: -152.24 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 16 Polarization: 17.21 SS G_CDS: -2.58 Total: 14.63 kcal Total: -88.49 3.15 -85.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340861309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.917 kcal (2) G-P(sol) polarization free energy of solvation -88.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds