Wall clock time and date at job start Sat Apr 11 2020 07:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00001 * 2 1 4 4 C 1.50696 * 109.46951 * 179.97438 * 3 2 1 5 5 N 1.30814 * 122.99860 * 90.03010 * 4 3 2 6 6 C 1.30151 * 117.31094 * 179.73051 * 5 4 3 7 7 N 1.38369 * 124.73360 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99541 * 179.97438 * 7 6 5 9 9 O 1.21266 * 120.00437 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99918 * 179.97438 * 8 7 6 11 11 S 1.80996 * 109.47196 * 179.97438 * 10 8 7 12 12 C 1.76195 * 100.00073 * 179.97438 * 11 10 8 13 13 H 1.08006 * 120.00083 * 359.97438 * 12 11 10 14 14 C 1.38802 * 119.99946 * 179.97438 * 12 11 10 15 15 N 1.31622 * 120.00220 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99770 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47173 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46602 * 119.99892 * 16 14 12 19 19 H 1.48500 * 109.47108 * 239.99928 * 16 14 12 20 20 S 1.70919 * 110.52441 * 359.97438 * 6 5 4 21 21 C 1.36845 * 123.00145 * 269.73326 * 4 3 2 22 22 C 1.46125 * 126.12281 * 0.23605 * 21 4 3 23 23 O 1.21664 * 120.00472 * 0.02562 * 22 21 4 24 24 O 1.34936 * 119.99980 * 179.97438 * 22 21 4 25 25 C 1.42904 * 117.00165 * 180.02562 * 24 22 21 26 26 H 1.08991 * 109.47112 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47076 * 299.99646 * 1 2 3 28 28 H 1.09001 * 109.47247 * 59.99049 * 1 2 3 29 29 H 1.09003 * 109.46498 * 60.00825 * 3 2 1 30 30 H 1.09000 * 109.47468 * 300.00428 * 3 2 1 31 31 H 0.97003 * 120.00459 * 359.97438 * 7 6 5 32 32 H 1.09001 * 109.46690 * 299.99629 * 10 8 7 33 33 H 1.09001 * 109.47242 * 59.99673 * 10 8 7 34 34 H 0.97002 * 120.00079 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.46821 * 59.99950 * 25 24 22 36 36 H 1.09002 * 109.46688 * 179.97438 * 25 24 22 37 37 H 1.08998 * 109.46971 * 299.99929 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2232 1.1305 -1.0962 6 6 5.5146 1.0336 -0.9667 7 7 6.4096 0.9645 -2.0197 8 6 7.7313 0.8660 -1.7752 9 8 8.1363 0.8385 -0.6325 10 6 8.7061 0.7901 -2.9221 11 16 10.3916 0.6661 -2.2741 12 6 11.2956 0.5937 -3.7848 13 1 10.7728 0.6293 -4.7292 14 6 12.6796 0.4908 -3.7611 15 7 13.3167 0.4468 -2.6101 16 14 13.6379 0.4133 -5.3627 17 1 12.6946 0.4797 -6.5077 18 1 14.5804 1.5588 -5.4314 19 1 14.4006 -0.8595 -5.4221 20 16 5.9507 1.0051 0.6857 21 6 4.2555 1.1331 1.1486 22 6 3.7360 1.1760 2.5137 23 8 2.5381 1.2668 2.7062 24 8 4.5847 1.1138 3.5608 25 6 4.0077 1.1604 4.8674 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 1.6887 1.8463 0.8901 30 1 1.6886 1.8465 -0.8899 31 1 6.0857 0.9869 -2.9338 32 1 8.4846 -0.0874 -3.5296 33 1 8.6177 1.6876 -3.5342 34 1 14.2839 0.3745 -2.5936 35 1 3.3252 0.3198 4.9932 36 1 4.7979 1.1016 5.6158 37 1 3.4598 2.0947 4.9895 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341843561.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:39 Heat of formation + Delta-G solvation = -107.404886 kcal Electronic energy + Delta-G solvation = -24486.267290 eV Core-core repulsion = 20483.053440 eV Total energy + Delta-G solvation = -4003.213850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.054 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.90805 -40.46909 -39.49145 -37.72046 -36.66792 -35.11654 -32.56999 -31.38092 -29.66058 -29.09637 -27.36271 -26.14455 -25.66396 -24.25134 -22.80684 -21.46742 -20.08789 -18.91379 -18.07266 -17.63564 -17.25861 -16.92403 -16.69566 -16.44202 -15.98174 -15.93879 -15.52902 -15.18522 -14.92408 -14.44539 -14.41035 -13.90983 -13.76873 -13.45755 -13.12628 -12.78315 -12.64749 -12.51761 -12.29586 -11.76178 -11.52731 -11.16308 -11.16021 -11.07183 -10.96882 -10.89652 -10.85016 -10.06655 -9.99641 -9.97118 -9.76547 -9.50046 -9.20642 -8.50165 -8.48141 -6.70394 -6.35921 -4.09404 -0.01800 0.83445 1.56477 1.82806 2.22781 2.47291 2.55669 2.73872 3.10671 3.14092 3.22692 3.31247 3.74163 4.04817 4.25575 4.65323 4.66070 4.88099 4.90776 4.97380 5.00424 5.03713 5.16196 5.24996 5.31477 5.33156 5.42035 5.46819 5.50292 5.53141 5.80738 5.89022 6.13842 6.66541 6.91255 7.45155 7.47110 7.53370 7.70144 8.21444 9.10136 10.71486 Molecular weight = 346.05amu Principal moments of inertia in cm(-1) A = 0.020815 B = 0.002272 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.832712 B =12320.597171 C =13527.706618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.379 6.379 3 C 0.128 3.872 4 C 0.193 3.807 5 N -0.514 5.514 6 C 0.260 3.740 7 N -0.621 5.621 8 C 0.531 3.469 9 O -0.472 6.472 10 C -0.150 4.150 11 S -0.050 6.050 12 C -0.539 4.539 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.866 5.866 16 Si 0.921 3.079 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.279 1.279 20 S 0.356 5.644 21 C -0.360 4.360 22 C 0.555 3.445 23 O -0.500 6.500 24 O -0.350 6.350 25 C 0.037 3.963 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.427 0.573 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.270 0.730 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.765 2.225 7.431 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.297 6.297 3 C 0.049 3.951 4 C 0.049 3.951 5 N -0.237 5.237 6 C -0.104 4.104 7 N -0.271 5.271 8 C 0.318 3.682 9 O -0.343 6.343 10 C -0.300 4.300 11 S 0.176 5.824 12 C -0.687 4.687 13 H 0.095 0.905 14 C -0.135 4.135 15 N -0.500 5.500 16 Si 0.747 3.253 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.205 1.205 20 S 0.611 5.389 21 C -0.484 4.484 22 C 0.400 3.600 23 O -0.390 6.390 24 O -0.266 6.266 25 C -0.057 4.057 26 H 0.104 0.896 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.267 0.733 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.183 1.952 9.421 22.359 hybrid contribution -1.264 0.259 -2.839 3.118 sum -21.447 2.211 6.582 22.543 Atomic orbital electron populations 1.22730 0.80509 1.02812 1.00093 1.87912 1.19920 1.26408 1.95503 1.21034 0.85295 0.86184 1.02538 1.19925 0.96142 0.94528 0.84537 1.65979 1.02417 1.23491 1.31841 1.23876 0.90785 0.99711 0.96028 1.43176 1.05142 1.70239 1.08540 1.21065 0.80535 0.74478 0.92126 1.90647 1.75736 1.45408 1.22541 1.23539 1.01916 1.06295 0.98281 1.85471 0.89094 1.96246 1.11552 1.22868 0.93986 1.59275 0.92548 0.90536 1.25004 0.96647 0.94252 0.97571 1.70002 1.09179 1.46183 1.24675 0.86076 0.79485 0.78026 0.81683 1.19531 1.20476 1.20463 1.85445 0.97628 1.62397 0.93443 1.25120 1.01947 1.26214 0.95143 1.19189 0.84149 0.72744 0.83940 1.90828 1.15826 1.46606 1.85715 1.86208 1.40302 1.84271 1.15818 1.22934 1.00183 1.02446 0.80134 0.89561 0.93708 0.94024 0.89198 0.91488 0.73328 0.87781 0.87792 0.92016 0.91985 0.87769 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -4.95 10.69 -35.23 -0.38 -5.32 16 3 C 0.13 1.57 5.76 36.00 0.21 1.77 16 4 C 0.19 2.71 6.46 -83.53 -0.54 2.17 16 5 N -0.51 -7.33 10.53 -10.81 -0.11 -7.44 16 6 C 0.26 3.67 8.16 -87.54 -0.71 2.95 16 7 N -0.62 -7.98 5.38 -13.13 -0.07 -8.05 16 8 C 0.53 8.44 7.81 -10.98 -0.09 8.36 16 9 O -0.47 -8.84 13.28 5.57 0.07 -8.77 16 10 C -0.15 -2.57 6.16 36.01 0.22 -2.35 16 11 S -0.05 -1.22 20.57 -107.50 -2.21 -3.43 16 12 C -0.54 -14.23 9.50 30.94 0.29 -13.94 16 13 H 0.08 1.91 7.80 -52.48 -0.41 1.50 16 14 C 0.08 2.02 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -24.74 13.22 55.49 0.73 -24.01 16 16 Si 0.92 20.35 29.55 -169.99 -5.02 15.32 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 S 0.36 5.06 20.02 -107.50 -2.15 2.91 16 21 C -0.36 -5.05 6.50 -36.92 -0.24 -5.29 16 22 C 0.56 7.55 7.90 33.89 0.27 7.82 16 23 O -0.50 -7.17 14.08 -19.39 -0.27 -7.45 16 24 O -0.35 -4.21 10.36 -41.14 -0.43 -4.64 16 25 C 0.04 0.31 10.45 101.05 1.06 1.36 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 1.07 6.04 -51.93 -0.31 0.76 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.43 4.17 8.82 -40.82 -0.36 3.81 16 32 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 33 H 0.10 1.59 8.14 -51.91 -0.42 1.16 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 35 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -33.24 358.42 -6.98 -40.21 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.02 Total: -0.95 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 1.48 Total: 6.20 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.55 Total: -39.50 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.00 Total: -26.17 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -4.36 Total: -0.53 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.24 -6.98 -40.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341843561.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.191 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds