Wall clock time and date at job start Sat Apr 11 2020 07:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47049 * 2 1 4 4 C 1.50698 * 109.47169 * 240.00079 * 2 1 3 5 5 H 1.07994 * 120.00393 * 268.17484 * 4 2 1 6 6 C 1.37882 * 119.99878 * 88.17364 * 4 2 1 7 7 N 1.31508 * 120.00095 * 169.32585 * 6 4 2 8 8 Si 1.86804 * 120.00044 * 349.32460 * 6 4 2 9 9 H 1.48497 * 109.46805 * 89.92825 * 8 6 4 10 10 H 1.48497 * 109.47260 * 209.93269 * 8 6 4 11 11 H 1.48501 * 109.46833 * 329.93353 * 8 6 4 12 12 N 1.46498 * 109.47359 * 119.99860 * 2 1 3 13 13 C 1.46507 * 119.99481 * 60.00492 * 12 2 1 14 14 C 1.34777 * 120.00545 * 239.99793 * 12 2 1 15 15 O 1.21558 * 119.99500 * 7.17814 * 14 12 2 16 16 C 1.47762 * 120.00007 * 187.17255 * 14 12 2 17 17 C 1.39627 * 120.15727 * 323.07597 * 16 14 12 18 18 C 1.37899 * 119.86182 * 179.72208 * 17 16 14 19 19 C 1.38426 * 120.18534 * 0.55162 * 18 17 16 20 20 S 1.76201 * 119.84165 * 179.70034 * 19 18 17 21 21 N 1.65602 * 107.21466 * 270.02085 * 20 19 18 22 22 O 1.42099 * 106.40187 * 23.55998 * 20 19 18 23 23 O 1.42104 * 106.40067 * 156.48612 * 20 19 18 24 24 C 1.38261 * 120.31402 * 359.72552 * 19 18 17 25 25 C 1.38160 * 120.13467 * 359.97438 * 24 19 18 26 26 Cl 1.73603 * 120.09560 * 179.97438 * 25 24 19 27 27 H 1.09002 * 109.47156 * 294.47214 * 1 2 3 28 28 H 1.08998 * 109.47372 * 54.47062 * 1 2 3 29 29 H 1.09003 * 109.46999 * 174.47842 * 1 2 3 30 30 H 0.97001 * 119.99985 * 179.97438 * 7 6 4 31 31 H 1.09009 * 109.46846 * 266.06254 * 13 12 2 32 32 H 1.09004 * 109.47066 * 146.07323 * 13 12 2 33 33 H 1.08992 * 109.47344 * 26.06850 * 13 12 2 34 34 H 1.07992 * 120.07039 * 359.97438 * 17 16 14 35 35 H 1.07995 * 119.90704 * 180.27567 * 18 17 16 36 36 H 0.97001 * 120.00546 * 0.02562 * 21 20 19 37 37 H 0.97005 * 119.99658 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.93531 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2404 -1.7695 -1.1954 6 6 2.2262 -0.0081 -2.4011 7 7 2.8574 -0.5705 -3.4084 8 14 1.5924 1.7423 -2.5561 9 1 2.6415 2.6905 -2.1031 10 1 1.2515 2.0215 -3.9742 11 1 0.3802 1.9061 -1.7141 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0356 2.0833 15 8 2.9800 1.1593 1.9613 16 6 3.4157 -0.7701 3.2042 17 6 2.7225 -1.8043 3.8362 18 6 3.3114 -2.4895 4.8780 19 6 4.5827 -2.1473 5.3057 20 16 5.3235 -3.0237 6.6428 21 7 4.9067 -2.2338 8.0373 22 8 4.6850 -4.2921 6.6939 23 8 6.7282 -2.8659 6.4967 24 6 5.2737 -1.1207 4.6890 25 6 4.6986 -0.4296 3.6400 26 17 5.5669 0.8597 2.8669 27 1 -0.3633 0.4257 0.9354 28 1 -0.3634 0.5972 -0.8363 29 1 -0.3633 -1.0229 -0.0989 30 1 2.9935 -0.0765 -4.2321 31 1 0.7765 -2.1446 2.0581 32 1 2.4922 -2.5995 1.9246 33 1 1.4614 -2.5792 0.4736 34 1 1.7287 -2.0697 3.5073 35 1 2.7776 -3.2925 5.3644 36 1 4.3491 -1.4411 7.9976 37 1 5.2196 -2.5643 8.8939 38 1 6.2654 -0.8591 5.0274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343269309.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:52 Heat of formation + Delta-G solvation = -64.852790 kcal Electronic energy + Delta-G solvation = -26008.011075 eV Core-core repulsion = 22004.598716 eV Total energy + Delta-G solvation = -4003.412359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.41628 -38.45112 -37.47131 -36.50751 -36.14962 -35.65005 -33.58538 -33.16643 -31.92386 -31.18726 -30.04061 -26.70353 -25.33600 -24.64383 -23.21089 -21.40991 -19.96520 -19.21398 -18.67036 -17.74677 -17.51411 -16.71887 -16.60613 -16.26760 -15.88605 -15.42247 -15.25965 -14.64784 -14.60086 -14.14261 -13.80542 -13.59926 -12.99248 -12.78806 -12.60914 -12.50009 -12.41273 -12.31559 -12.30961 -12.12464 -11.84910 -11.77446 -11.54903 -11.35271 -11.19906 -10.90303 -10.88968 -10.70688 -10.33184 -9.82254 -9.65380 -9.43569 -9.24579 -9.08505 -8.68849 -7.87236 -6.25097 -4.25961 -0.08701 0.18586 0.77847 2.02582 2.53237 2.82940 3.18700 3.26340 3.30335 3.34216 3.36543 3.62798 4.11992 4.30610 4.42296 4.50261 4.61801 4.89252 5.01685 5.13241 5.28280 5.42348 5.53122 5.57690 5.58787 5.69330 5.73320 6.12609 6.19472 6.21729 6.29485 6.46535 6.60345 6.81470 6.94292 7.30694 7.51050 7.90610 8.34104 8.60041 8.77198 9.37147 10.86665 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.003152 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.097889 B = 8879.746105 C = 9414.189655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.230 3.770 3 H 0.063 0.937 4 C -0.534 4.534 5 H 0.079 0.921 6 C 0.083 3.917 7 N -0.885 5.885 8 Si 0.864 3.136 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.252 1.252 12 N -0.573 5.573 13 C 0.068 3.932 14 C 0.537 3.463 15 O -0.523 6.523 16 C -0.048 4.048 17 C -0.110 4.110 18 C -0.025 4.025 19 C -0.659 4.659 20 S 2.707 3.293 21 N -1.250 6.250 22 O -0.959 6.959 23 O -0.959 6.959 24 C -0.019 4.019 25 C -0.017 4.017 26 Cl -0.025 7.025 27 H 0.027 0.973 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.267 0.733 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.418 0.582 37 H 0.421 0.579 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 -3.607 22.296 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.130 3.870 3 H 0.081 0.919 4 C -0.572 4.572 5 H 0.097 0.903 6 C -0.122 4.122 7 N -0.521 5.521 8 Si 0.690 3.310 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.177 1.177 12 N -0.303 5.303 13 C -0.076 4.076 14 C 0.323 3.677 15 O -0.400 6.400 16 C -0.052 4.052 17 C -0.129 4.129 18 C -0.044 4.044 19 C -0.746 4.746 20 S 2.795 3.205 21 N -0.925 5.925 22 O -0.948 6.948 23 O -0.948 6.948 24 C -0.039 4.039 25 C -0.045 4.045 26 Cl 0.005 6.995 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.178 0.822 35 H 0.171 0.829 36 H 0.245 0.755 37 H 0.251 0.749 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.221 -3.690 21.653 21.999 hybrid contribution -0.687 1.604 -0.427 1.796 sum 0.535 -2.086 21.226 21.335 Atomic orbital electron populations 1.22451 0.98265 1.01230 0.99701 1.19236 0.90712 0.94781 0.82308 0.91894 1.21060 1.45764 0.97386 0.92998 0.90323 1.24882 0.93507 0.97980 0.95834 1.69920 1.38717 1.38394 1.05084 0.87132 0.80833 0.85388 0.77615 1.19837 1.21141 1.17672 1.48122 1.47836 1.11747 1.22578 1.22141 0.98896 0.83178 1.03342 1.18042 0.80319 0.87226 0.82160 1.90801 1.61244 1.13843 1.74127 1.20558 0.93280 0.95195 0.96196 1.22013 1.01727 0.93899 0.95291 1.20998 0.92098 0.96954 0.94395 1.30660 1.07470 1.13906 1.22562 1.01492 0.73579 0.72948 0.72518 1.53041 1.70115 1.45106 1.24255 1.93617 1.76664 1.38467 1.86033 1.93624 1.29876 1.85684 1.85609 1.20784 0.99350 0.91326 0.92442 1.21049 0.93124 0.94073 0.96289 1.98443 1.74712 1.46790 1.79570 0.95429 0.91752 0.93027 0.92299 0.93060 0.91680 0.89257 0.82247 0.82864 0.75491 0.74891 0.82576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 8.85 37.16 0.33 -2.82 16 2 C 0.23 5.27 2.20 -69.08 -0.15 5.12 16 3 H 0.06 1.60 5.11 -51.93 -0.27 1.33 16 4 C -0.53 -14.14 8.67 -34.44 -0.30 -14.44 16 5 H 0.08 2.21 6.92 -52.49 -0.36 1.85 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 7 N -0.89 -26.10 13.96 55.43 0.77 -25.32 16 8 Si 0.86 20.88 26.41 -169.99 -4.49 16.39 16 9 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.25 -5.66 5.15 56.52 0.29 -5.36 16 12 N -0.57 -11.25 2.75 -176.40 -0.49 -11.73 16 13 C 0.07 1.02 7.94 59.85 0.48 1.49 16 14 C 0.54 10.52 7.10 -12.37 -0.09 10.43 16 15 O -0.52 -11.87 14.48 5.31 0.08 -11.79 16 16 C -0.05 -0.74 5.36 -104.94 -0.56 -1.30 16 17 C -0.11 -1.26 7.50 -39.19 -0.29 -1.56 16 18 C -0.03 -0.24 9.50 -39.64 -0.38 -0.61 16 19 C -0.66 -6.44 5.95 -39.50 -0.23 -6.68 16 20 S 2.71 22.87 6.28 -107.50 -0.67 22.19 16 21 N -1.25 -5.42 9.55 60.35 0.58 -4.84 16 22 O -0.96 -10.66 17.27 -57.17 -0.99 -11.65 16 23 O -0.96 -11.25 17.27 -57.17 -0.99 -12.23 16 24 C -0.02 -0.22 9.29 -39.60 -0.37 -0.59 16 25 C -0.02 -0.24 6.34 -39.06 -0.25 -0.49 16 26 Cl -0.02 -0.41 26.71 -51.86 -1.39 -1.79 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 1.32 5.40 -51.93 -0.28 1.04 16 29 H 0.05 0.94 7.85 -51.93 -0.41 0.54 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.05 0.60 7.04 -51.92 -0.37 0.23 16 32 H 0.06 0.86 5.48 -51.93 -0.28 0.58 16 33 H 0.09 1.47 6.65 -51.93 -0.35 1.12 16 34 H 0.16 1.52 5.02 -52.49 -0.26 1.26 16 35 H 0.15 1.04 7.60 -52.49 -0.40 0.64 16 36 H 0.42 0.99 8.92 -34.48 -0.31 0.68 16 37 H 0.42 1.11 8.96 -34.47 -0.31 0.80 16 38 H 0.16 1.54 7.60 -52.49 -0.40 1.14 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -36.70 337.22 -8.08 -44.77 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -3.66 Total: 0.16 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.92 Total: -9.25 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.86 Total: -41.90 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.90 Total: -35.67 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.49 Total: 16.39 kcal Atomic # 16 Polarization: 22.87 SS G_CDS: -0.67 Total: 22.19 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.39 Total: -1.79 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.70 -8.08 -44.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343269309.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.080 kcal (2) G-P(sol) polarization free energy of solvation -36.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds