Wall clock time and date at job start Sat Apr 11 2020 07:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47049 * 2 1 4 4 C 1.50698 * 109.47169 * 240.00079 * 2 1 3 5 5 H 1.07994 * 120.00393 * 268.17484 * 4 2 1 6 6 C 1.37882 * 119.99878 * 88.17364 * 4 2 1 7 7 N 1.31508 * 120.00095 * 169.32585 * 6 4 2 8 8 Si 1.86804 * 120.00044 * 349.32460 * 6 4 2 9 9 H 1.48497 * 109.46805 * 89.92825 * 8 6 4 10 10 H 1.48497 * 109.47260 * 209.93269 * 8 6 4 11 11 H 1.48501 * 109.46833 * 329.93353 * 8 6 4 12 12 N 1.46498 * 109.47359 * 119.99860 * 2 1 3 13 13 C 1.46507 * 119.99481 * 60.00492 * 12 2 1 14 14 C 1.34777 * 120.00545 * 239.99793 * 12 2 1 15 15 O 1.21558 * 119.99500 * 7.17814 * 14 12 2 16 16 C 1.47762 * 120.00007 * 187.17255 * 14 12 2 17 17 C 1.39627 * 120.15727 * 323.07597 * 16 14 12 18 18 C 1.37899 * 119.86182 * 179.72208 * 17 16 14 19 19 C 1.38426 * 120.18534 * 0.55162 * 18 17 16 20 20 S 1.76201 * 119.84165 * 179.70034 * 19 18 17 21 21 N 1.65602 * 107.21466 * 270.02085 * 20 19 18 22 22 O 1.42099 * 106.40187 * 23.55998 * 20 19 18 23 23 O 1.42104 * 106.40067 * 156.48612 * 20 19 18 24 24 C 1.38261 * 120.31402 * 359.72552 * 19 18 17 25 25 C 1.38160 * 120.13467 * 359.97438 * 24 19 18 26 26 Cl 1.73603 * 120.09560 * 179.97438 * 25 24 19 27 27 H 1.09002 * 109.47156 * 294.47214 * 1 2 3 28 28 H 1.08998 * 109.47372 * 54.47062 * 1 2 3 29 29 H 1.09003 * 109.46999 * 174.47842 * 1 2 3 30 30 H 0.97001 * 119.99985 * 179.97438 * 7 6 4 31 31 H 1.09009 * 109.46846 * 266.06254 * 13 12 2 32 32 H 1.09004 * 109.47066 * 146.07323 * 13 12 2 33 33 H 1.08992 * 109.47344 * 26.06850 * 13 12 2 34 34 H 1.07992 * 120.07039 * 359.97438 * 17 16 14 35 35 H 1.07995 * 119.90704 * 180.27567 * 18 17 16 36 36 H 0.97001 * 120.00546 * 0.02562 * 21 20 19 37 37 H 0.97005 * 119.99658 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.93531 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2404 -1.7695 -1.1954 6 6 2.2262 -0.0081 -2.4011 7 7 2.8574 -0.5705 -3.4084 8 14 1.5924 1.7423 -2.5561 9 1 2.6415 2.6905 -2.1031 10 1 1.2515 2.0215 -3.9742 11 1 0.3802 1.9061 -1.7141 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0356 2.0833 15 8 2.9800 1.1593 1.9613 16 6 3.4157 -0.7701 3.2042 17 6 2.7225 -1.8043 3.8362 18 6 3.3114 -2.4895 4.8780 19 6 4.5827 -2.1473 5.3057 20 16 5.3235 -3.0237 6.6428 21 7 4.9067 -2.2338 8.0373 22 8 4.6850 -4.2921 6.6939 23 8 6.7282 -2.8659 6.4967 24 6 5.2737 -1.1207 4.6890 25 6 4.6986 -0.4296 3.6400 26 17 5.5669 0.8597 2.8669 27 1 -0.3633 0.4257 0.9354 28 1 -0.3634 0.5972 -0.8363 29 1 -0.3633 -1.0229 -0.0989 30 1 2.9935 -0.0765 -4.2321 31 1 0.7765 -2.1446 2.0581 32 1 2.4922 -2.5995 1.9246 33 1 1.4614 -2.5792 0.4736 34 1 1.7287 -2.0697 3.5073 35 1 2.7776 -3.2925 5.3644 36 1 4.3491 -1.4411 7.9976 37 1 5.2196 -2.5643 8.8939 38 1 6.2654 -0.8591 5.0274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343269309.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:52 Heat of formation + Delta-G solvation = -95.030763 kcal Electronic energy + Delta-G solvation = -26009.319690 eV Core-core repulsion = 22004.598716 eV Total energy + Delta-G solvation = -4004.720974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.64228 -39.69756 -38.27553 -37.68895 -37.23120 -36.95528 -34.92350 -34.03392 -33.40419 -32.14752 -31.52197 -28.00515 -27.24583 -25.82952 -24.18227 -22.87628 -20.68014 -20.62026 -19.49143 -19.20485 -18.35586 -18.21666 -17.75950 -17.27713 -17.06356 -16.41505 -16.34481 -16.13104 -15.86920 -15.22872 -15.11146 -14.76666 -14.62389 -14.28956 -14.06125 -13.90575 -13.51639 -13.26946 -13.23974 -13.21003 -13.20625 -13.07109 -12.82725 -12.58803 -12.55680 -12.38634 -12.14874 -12.01162 -11.60636 -11.33369 -11.32946 -10.90757 -10.76794 -10.57473 -10.08768 -9.44462 -8.38931 -6.41683 -0.96235 -0.63325 -0.14895 0.92571 1.28076 1.34180 1.40111 1.44679 1.90247 2.16342 2.27471 2.31343 2.67448 2.99715 3.25418 3.37620 3.54501 3.78770 3.94722 4.12424 4.28093 4.39816 4.44365 4.57686 4.59283 4.69666 4.73049 4.78467 4.82657 4.93815 5.13474 5.30124 5.31661 5.34772 5.54318 5.70356 6.10117 6.36907 6.57319 6.62847 7.09172 7.26397 8.76109 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.003152 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.097889 B = 8879.746105 C = 9414.189655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.035 0.965 4 C -0.527 4.527 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.933 5.933 8 Si 0.915 3.085 9 H -0.289 1.289 10 H -0.280 1.280 11 H -0.222 1.222 12 N -0.582 5.582 13 C 0.062 3.938 14 C 0.531 3.469 15 O -0.566 6.566 16 C -0.074 4.074 17 C -0.100 4.100 18 C -0.010 4.010 19 C -0.647 4.647 20 S 2.738 3.262 21 N -1.231 6.231 22 O -0.979 6.979 23 O -0.991 6.991 24 C -0.018 4.018 25 C -0.036 4.036 26 Cl -0.055 7.055 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.267 0.733 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.184 0.816 35 H 0.192 0.808 36 H 0.430 0.570 37 H 0.432 0.568 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 -4.828 25.576 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.129 3.871 3 H 0.053 0.947 4 C -0.565 4.565 5 H 0.071 0.929 6 C -0.173 4.173 7 N -0.572 5.572 8 Si 0.740 3.260 9 H -0.216 1.216 10 H -0.206 1.206 11 H -0.145 1.145 12 N -0.312 5.312 13 C -0.080 4.080 14 C 0.319 3.681 15 O -0.446 6.446 16 C -0.078 4.078 17 C -0.119 4.119 18 C -0.029 4.029 19 C -0.733 4.733 20 S 2.824 3.176 21 N -0.913 5.913 22 O -0.968 6.968 23 O -0.980 6.980 24 C -0.038 4.038 25 C -0.065 4.065 26 Cl -0.026 7.026 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.201 0.799 35 H 0.209 0.791 36 H 0.261 0.739 37 H 0.266 0.734 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.532 -4.935 24.963 25.452 hybrid contribution -0.102 1.834 -1.259 2.227 sum -0.634 -3.102 23.704 23.915 Atomic orbital electron populations 1.22280 0.95418 1.02376 1.00593 1.18983 0.92757 0.93111 0.82243 0.94659 1.21332 1.44397 0.96398 0.94389 0.92938 1.25642 0.94068 1.01746 0.95813 1.70038 1.41146 1.40162 1.05886 0.86320 0.80977 0.80545 0.78163 1.21588 1.20556 1.14538 1.48067 1.48124 1.13439 1.21575 1.22441 1.01510 0.80529 1.03508 1.18630 0.79523 0.87038 0.82926 1.90763 1.62391 1.15889 1.75576 1.20311 0.94034 0.97225 0.96275 1.22256 1.02340 0.92297 0.95014 1.21463 0.91686 0.96685 0.93049 1.30940 1.07425 1.12508 1.22401 1.00505 0.72429 0.72231 0.72435 1.52612 1.70078 1.45293 1.23332 1.93599 1.76857 1.39933 1.86403 1.93595 1.32107 1.86076 1.86205 1.20924 1.00028 0.91333 0.91493 1.21215 0.93334 0.94325 0.97582 1.98426 1.75353 1.48477 1.80368 0.93114 0.92502 0.91440 0.92363 0.88583 0.89831 0.91109 0.79919 0.79068 0.73932 0.73422 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 8.85 71.98 0.64 -4.96 16 2 C 0.23 10.56 2.20 44.24 0.10 10.66 16 3 H 0.04 1.82 5.11 -2.39 -0.01 1.81 16 4 C -0.53 -28.50 8.67 25.60 0.22 -28.28 16 5 H 0.05 3.05 6.92 -2.91 -0.02 3.03 16 6 C 0.03 1.55 5.47 84.66 0.46 2.01 16 7 N -0.93 -57.03 13.96 21.45 0.30 -56.73 16 8 Si 0.92 43.89 26.41 68.60 1.81 45.70 16 9 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.22 -9.49 5.15 99.48 0.51 -8.98 16 12 N -0.58 -22.42 2.75 -830.29 -2.29 -24.70 16 13 C 0.06 1.71 7.94 127.77 1.01 2.73 16 14 C 0.53 20.73 7.10 86.76 0.62 21.35 16 15 O -0.57 -26.36 14.48 -3.90 -0.06 -26.42 16 16 C -0.07 -2.20 5.36 -20.07 -0.11 -2.30 16 17 C -0.10 -1.94 7.50 22.52 0.17 -1.77 16 18 C -0.01 -0.15 9.50 22.23 0.21 0.07 16 19 C -0.65 -10.51 5.95 22.32 0.13 -10.38 16 20 S 2.74 37.30 6.28 -56.49 -0.35 36.95 16 21 N -1.23 -6.06 9.55 37.02 0.35 -5.71 16 22 O -0.98 -18.13 17.27 -128.00 -2.21 -20.34 16 23 O -0.99 -20.96 17.27 -128.00 -2.21 -23.17 16 24 C -0.02 -0.39 9.29 22.26 0.21 -0.18 16 25 C -0.04 -1.05 6.34 22.60 0.14 -0.90 16 26 Cl -0.06 -1.90 26.71 -2.72 -0.07 -1.97 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 2.21 5.40 -2.39 -0.01 2.20 16 29 H 0.07 2.31 7.85 -2.39 -0.02 2.29 16 30 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.10 1.81 7.04 -2.38 -0.02 1.79 16 32 H 0.08 1.99 5.48 -2.38 -0.01 1.98 16 33 H 0.07 2.25 6.65 -2.39 -0.02 2.23 16 34 H 0.18 2.60 5.02 -2.91 -0.01 2.58 16 35 H 0.19 1.41 7.60 -2.91 -0.02 1.39 16 36 H 0.43 0.30 8.92 -96.74 -0.86 -0.57 16 37 H 0.43 0.68 8.96 -96.74 -0.87 -0.19 16 38 H 0.17 3.10 7.60 -2.91 -0.02 3.08 16 Total: -1.00 -83.94 337.22 -1.68 -85.62 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -0.76 Total: 2.76 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 3.81 Total: -11.98 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -1.63 Total: -87.14 kcal Atomic # 8 Polarization: -65.46 SS G_CDS: -4.48 Total: -69.93 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.81 Total: 45.70 kcal Atomic # 16 Polarization: 37.30 SS G_CDS: -0.35 Total: 36.95 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.07 Total: -1.97 kcal Total: -83.94 -1.68 -85.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343269309.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.410 kcal (2) G-P(sol) polarization free energy of solvation -83.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds